FvH4_3g10090

Ferredoxin-NADP reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0006772
Physical Location & Seq
Forward (+)
5870477 .. 5874020
3544 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g10090.t1

Sequence Viewer

Length: 1143 bp
ATGTCTCACTTGATGGCTCTCTCTCAGGTTTCACTTGGTGCTACTGTTTCTGTTGGAAGTGATGCATCTCTTAGAAGATCTGTGTTCAAGGCACAAAACGTAAACTTTAGTGACAAATCATGGGCACCTGTTTTACCATTGGACTTGAAAACAAAGAGCGGGAGGCTAAGAAACAAGAGTGTTGTATGCATGTCAGTGCAACAAGCAAGTGCACCAAAAGTTGCTGTGTCTCCCTTAGAACTTGACAATGCTACAGAACCCCCGTTGAACATATACAAGCCTAAGGAACCTTATACCGCAACCATTGTTTCTGTTGAGAGGATTGTAGGCCCGAAGGCTCCTGGAGAAACTTGCCATATAGTGATTGATCATGGTGGTAATGTTCCCTATTGGGAGGGACAAAGTTATGGTGTAATTCCTCCTGGTGAAAACCCAAAGAAACCTGGGGCTCCAAACAATGTTCGTCTTTACTCCATTGCATCAACAAGGTATGGGGACTATTTTGATGGCAAGACAACTAGTTTGTGTGTCCGTCGTGCTGTTTATTATGACCCAGAGACCGGGAAGGAGGATCCCTCCAAAAATGGAGTATGCAGCAACTATTTATGCAACTCTAAACCCGGAGACAAAATTAAGATCACAGGTCCTGCTGGCAAGATCATGCTCCTGCCTGAAGACAACCCAAATGCCACCCACATTATGATTGCCACCGGCACTGGTGTTGCTCCATACAGAGGCTACCTTCGTCGTATGTTCATGGAAGCTGTTCCTACATTCAAATTTGGTGGCCTTGCATGGCTGTTTCTTGGAGTGGCCAATACCGACAGCCTCCTCTATGATGAAGAATTCAGCAAGTATCTTAAGGACTACCCTGATAATTTCCGATACGATATAGCACTTAGTAGAGAACATAAGAACAAGAGAGGAGGAAAGATGTATGTTCAAGATAAAATTGAAGAATACAGTGATGAGATCTTTAAACTCTTGGATGGTGGGGCACATATCTACTTTTGTGGGCTCAAGGGTATGATGCCTGGAATTCAAGAAACCTTGAAGAGGGTTGCAGAAGAAAGAGGGGAAAGTTGGGAGGAGAAGCTTTCACAACTGAAAAAGAACAAGCAGTGGCATGTTGAAGTTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00195 ko01100 map00195 map01100
Pfam Domains
Protein Families
NAD_binding_1

Protein Analysis

381

Amino Acids

42.28

Weight (kDa)

8.76

Isoelectric Point (pI)

44.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAD_binding_1 PF00175 234 - 348 2.3e-24 Oxidoreductase NAD-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 124
AccBSI CCGCTC 1 cut(s) 159
AciI CCGC 2 cut(s) 159, 297
AclWI GGATC 2 cut(s) 566, 579
AcoI YGGCCR 1 cut(s) 813
AcsI RAATTY 3 cut(s) 779, 845, 1038
AcuI CTGAAG 1 cut(s) 693
AdeI CACNNNGTG 1 cut(s) 38
AfiI CCNNNNNNNGG 3 cut(s) 560, 734, 1056
AflII CTTAAG 1 cut(s) 860
AgsI TTSAA 9 cut(s) 88, 148, 268, 778, 944, 956, 1043, 1054, 1133
AhlI ACTAGT 1 cut(s) 518
AjnI CCWGG 4 cut(s) 340, 421, 442, 1033
AluBI AGCT 2 cut(s) 764, 1096
AluI AGCT 2 cut(s) 764, 1096
Alw21I GWGCWC 1 cut(s) 214
Alw26I GTCTC 4 cut(s) 9, 234, 551, 618
Alw44I GTGCAC 1 cut(s) 210
AlwI GGATC 2 cut(s) 566, 579
AlwNI CAGNNNCTG 1 cut(s) 647
AoxI GGCC 3 cut(s) 328, 787, 813
ApaLI GTGCAC 1 cut(s) 210
ApeKI GCWGC 1 cut(s) 594
ApoI RAATTY 3 cut(s) 779, 845, 1038
ArsI GACNNNNNNTTYG 2 cut(s) 505, 537
Asp700I GAANNNNTTC 1 cut(s) 765
AspS9I GGNCC 2 cut(s) 329, 644
AsuC2I CCSGG 2 cut(s) 562, 621
AsuHPI GGTGA 1 cut(s) 437
AvaII GGWCC 1 cut(s) 644
AxyI CCTNAGG 1 cut(s) 282
BaeGI GKGCMC 3 cut(s) 127, 214, 1000
BalI TGGCCA 1 cut(s) 815
BamHI GGATCC 1 cut(s) 571
BanI GGYRCC 1 cut(s) 124
BanII GRGCYC 2 cut(s) 451, 1020
BbsI GAAGAC 1 cut(s) 681
Bbv12I GWGCWC 1 cut(s) 214
BbvI GCAGC 1 cut(s) 606
BccI CCATC 3 cut(s) 7, 500, 983
BciT130I CCWGG 4 cut(s) 342, 423, 444, 1035
BclI TGATCA 1 cut(s) 367
BcnI CCSGG 2 cut(s) 562, 621
BcoDI GTCTC 4 cut(s) 9, 234, 551, 618
BcuI ACTAGT 1 cut(s) 518
BfaI CTAG 1 cut(s) 519
BfmI CTRYAG 1 cut(s) 252
BfrI CTTAAG 1 cut(s) 860
BglII AGATCT 2 cut(s) 77, 972
BisI GCNGC 1 cut(s) 595
BlsI GCNGC 1 cut(s) 596
Bme1390I CCNGG 6 cut(s) 342, 423, 444, 562, 621, 1035
Bme18I GGWCC 1 cut(s) 644
BmgT120I GGNCC 2 cut(s) 329, 644
BmiI GGNNCC 5 cut(s) 126, 288, 339, 450, 573
BmrFI CCNGG 6 cut(s) 342, 423, 444, 562, 621, 1035
BmsI GCATC 4 cut(s) 52, 74, 488, 1020
BpiI GAAGAC 1 cut(s) 681
BplI GAGNNNNNCTC 2 cut(s) 560, 592
BpmI CTGGAG 1 cut(s) 363
BpuEI CTTGAG 1 cut(s) 1004
BpuMI CCSGG 2 cut(s) 562, 621
BsaI GGTCTC 1 cut(s) 551
BsaJI CCNNGG 1 cut(s) 443
Bsc4I CCNNNNNNNGG 3 cut(s) 560, 734, 1056
Bse118I RCCGGY 1 cut(s) 710
Bse1I ACTGG 1 cut(s) 721
Bse21I CCTNAGG 1 cut(s) 282
Bse3DI GCAATG 1 cut(s) 474
BseBI CCWGG 4 cut(s) 342, 423, 444, 1035
BseDI CCNNGG 1 cut(s) 443
BseGI GGATG 1 cut(s) 994
BseLI CCNNNNNNNGG 3 cut(s) 560, 734, 1056
BseMI GCAATG 1 cut(s) 474
BseMII CTCAG 1 cut(s) 38
BseNI ACTGG 1 cut(s) 721
BseRI GAGGAG 3 cut(s) 821, 939, 1103
BseSI GKGCMC 3 cut(s) 127, 214, 1000
BseXI GCAGC 1 cut(s) 606
BshFI GGCC 3 cut(s) 330, 789, 815
BshNI GGYRCC 1 cut(s) 124
BsiHKAI GWGCWC 1 cut(s) 214
BsiSI CCGG 3 cut(s) 561, 621, 711
BslFI GGGAC 2 cut(s) 411, 509
BslI CCNNNNNNNGG 3 cut(s) 560, 734, 1056
BsmAI GTCTC 4 cut(s) 9, 234, 551, 618
BsmFI GGGAC 2 cut(s) 411, 509
BsnI GGCC 3 cut(s) 330, 789, 815
Bso31I GGTCTC 1 cut(s) 551
Bsp1286I GDGCHC 5 cut(s) 127, 214, 451, 1000, 1020
Bsp143I GATC 6 cut(s) 77, 367, 571, 636, 657, 972
BspACI CCGC 2 cut(s) 159, 297
BspANI GGCC 3 cut(s) 330, 789, 815
BspCNI CTCAG 1 cut(s) 37
BspLI GGNNCC 5 cut(s) 126, 288, 339, 450, 573
BspPI GGATC 2 cut(s) 566, 579
BspT107I GGYRCC 1 cut(s) 124
BspTI CTTAAG 1 cut(s) 860
BspTNI GGTCTC 1 cut(s) 551
BsrBI CCGCTC 1 cut(s) 159
BsrDI GCAATG 1 cut(s) 474
BsrFI RCCGGY 1 cut(s) 710
BsrI ACTGG 1 cut(s) 721
BssAI RCCGGY 1 cut(s) 710
BssECI CCNNGG 1 cut(s) 443
BssMI GATC 6 cut(s) 77, 367, 571, 636, 657, 972
Bst2UI CCWGG 4 cut(s) 342, 423, 444, 1035
Bst4CI ACNGT 2 cut(s) 46, 965
Bst6I CTCTTC 1 cut(s) 1049
BstAFI CTTAAG 1 cut(s) 860
BstC8I GCNNGC 1 cut(s) 652
BstDEI CTNAG 6 cut(s) 24, 71, 167, 235, 282, 899
BstENI CCTNNNNNAGG 1 cut(s) 1054
BstF5I GGATG 1 cut(s) 994
BstKTI GATC 6 cut(s) 80, 370, 574, 639, 660, 975
BstMAI GTCTC 4 cut(s) 9, 234, 551, 618
BstMBI GATC 6 cut(s) 77, 367, 571, 636, 657, 972
BstNI CCWGG 4 cut(s) 342, 423, 444, 1035
BstNSI RCATGY 2 cut(s) 193, 1130
BstSCI CCNGG 6 cut(s) 340, 421, 442, 560, 619, 1033
BstSFI CTRYAG 1 cut(s) 252
BstSLI GKGCMC 3 cut(s) 127, 214, 1000
BstV1I GCAGC 1 cut(s) 606
BstV2I GAAGAC 1 cut(s) 681
BstX2I RGATCY 3 cut(s) 77, 571, 972
BstYI RGATCY 3 cut(s) 77, 571, 972
Bsu36I CCTNAGG 1 cut(s) 282
BsuRI GGCC 3 cut(s) 330, 789, 815
BtsCI GGATG 1 cut(s) 994
BtsI GCAGTG 1 cut(s) 1127
BtsIMutI CAGTG 4 cut(s) 201, 714, 970, 1127
Cac8I GCNNGC 1 cut(s) 652
CaiI CAGNNNCTG 1 cut(s) 647
Cfr10I RCCGGY 1 cut(s) 710
Cfr13I GGNCC 2 cut(s) 329, 644
CspCI CAANNNNNGTGG 2 cut(s) 766, 801
CviAII CATG 7 cut(s) 120, 190, 371, 661, 757, 795, 1127
DdeI CTNAG 6 cut(s) 24, 71, 167, 235, 282, 899
DpnI GATC 6 cut(s) 79, 369, 573, 638, 659, 974
DpnII GATC 6 cut(s) 77, 367, 571, 636, 657, 972
DraI TTTAAA 1 cut(s) 979
DraIII CACNNNGTG 1 cut(s) 38
EaeI YGGCCR 1 cut(s) 813
Eam1104I CTCTTC 1 cut(s) 1049
EarI CTCTTC 1 cut(s) 1049
Eco24I GRGCYC 2 cut(s) 451, 1020
Eco31I GGTCTC 1 cut(s) 551
Eco47I GGWCC 1 cut(s) 644
Eco57I CTGAAG 1 cut(s) 693
Eco81I CCTNAGG 1 cut(s) 282
EcoNI CCTNNNNNAGG 1 cut(s) 1054
EcoO109I RGGNCCY 1 cut(s) 644
EcoRI GAATTC 2 cut(s) 845, 1038
EcoRII CCWGG 4 cut(s) 340, 421, 442, 1033
EcoT22I ATGCAT 2 cut(s) 67, 191
EcoT38I GRGCYC 2 cut(s) 451, 1020
FaeI CATG 7 cut(s) 123, 193, 374, 664, 760, 798, 1130
FaqI GGGAC 2 cut(s) 411, 509
FatI CATG 7 cut(s) 119, 189, 370, 660, 756, 794, 1126
FauI CCCGC 1 cut(s) 152
FbaI TGATCA 1 cut(s) 367
Fnu4HI GCNGC 1 cut(s) 595
FokI GGATG 1 cut(s) 1001
FriOI GRGCYC 2 cut(s) 451, 1020
Fsp4HI GCNGC 1 cut(s) 595
FspBI CTAG 1 cut(s) 519
GluI GCNGC 1 cut(s) 595
GsuI CTGGAG 1 cut(s) 363
HaeIII GGCC 3 cut(s) 330, 789, 815
HapII CCGG 3 cut(s) 561, 621, 711
Hin1II CATG 7 cut(s) 123, 193, 374, 664, 760, 798, 1130
HindIII AAGCTT 1 cut(s) 1094
HpaII CCGG 3 cut(s) 561, 621, 711
HphI GGTGA 1 cut(s) 437
Hpy166II GTNNAC 3 cut(s) 103, 212, 1138
Hpy188I TCNGA 1 cut(s) 884
Hpy188III TCNNGA 2 cut(s) 944, 1043
Hpy8I GTNNAC 3 cut(s) 103, 212, 1138
Hpy99I CGWCG 2 cut(s) 537, 750
HpyAV CCTTC 3 cut(s) 328, 559, 752
HpyCH4III ACNGT 2 cut(s) 46, 965
HpyCH4IV ACGT 1 cut(s) 99
HpyCH4V TGCA 9 cut(s) 65, 189, 199, 212, 479, 594, 609, 794, 1064
HpyF3I CTNAG 6 cut(s) 24, 71, 167, 235, 282, 899
HpySE526I ACGT 1 cut(s) 99
Hsp92II CATG 7 cut(s) 123, 193, 374, 664, 760, 798, 1130
Ksp22I TGATCA 1 cut(s) 367
Kzo9I GATC 6 cut(s) 77, 367, 571, 636, 657, 972
LmnI GCTCC 4 cut(s) 343, 454, 669, 730
Lsp1109I GCAGC 1 cut(s) 606
LweI GCATC 4 cut(s) 52, 74, 488, 1020
MaeI CTAG 1 cut(s) 519
MaeII ACGT 1 cut(s) 99
MaeIII GTNAC 1 cut(s) 110
MalI GATC 6 cut(s) 79, 369, 573, 638, 659, 974
MbiI CCGCTC 1 cut(s) 159
MboI GATC 6 cut(s) 77, 367, 571, 636, 657, 972
MboII GAAGA 6 cut(s) 87, 686, 854, 968, 1066, 1079
MflI RGATCY 3 cut(s) 77, 571, 972
MhlI GDGCHC 5 cut(s) 127, 214, 451, 1000, 1020
MlsI TGGCCA 1 cut(s) 815
MluCI AATT 7 cut(s) 414, 630, 779, 845, 877, 951, 1038
MluNI TGGCCA 1 cut(s) 815
MmeI TCCRAC 1 cut(s) 34
Mox20I TGGCCA 1 cut(s) 815
Mph1103I ATGCAT 2 cut(s) 67, 191
MroXI GAANNNNTTC 1 cut(s) 765
MscI TGGCCA 1 cut(s) 815
MseI TTAA 3 cut(s) 633, 861, 978
MslI CAYNNNNRTG 1 cut(s) 194
Msp20I TGGCCA 1 cut(s) 815
MspCI CTTAAG 1 cut(s) 860
MspI CCGG 3 cut(s) 561, 621, 711
MspR9I CCNGG 6 cut(s) 342, 423, 444, 562, 621, 1035
MvaI CCWGG 4 cut(s) 342, 423, 444, 1035
NciI CCSGG 2 cut(s) 562, 621
NdeII GATC 6 cut(s) 77, 367, 571, 636, 657, 972
NlaIII CATG 7 cut(s) 123, 193, 374, 664, 760, 798, 1130
NlaIV GGNNCC 5 cut(s) 126, 288, 339, 450, 573
NmuCI GTSAC 1 cut(s) 110
NsiI ATGCAT 2 cut(s) 67, 191
NspI RCATGY 2 cut(s) 193, 1130
PdmI GAANNNNTTC 1 cut(s) 765
PfoI TCCNGGA 1 cut(s) 340
PkrI GCNGC 1 cut(s) 596
PpuMI RGGWCCY 1 cut(s) 644
Psp5II RGGWCCY 1 cut(s) 644
Psp6I CCWGG 4 cut(s) 340, 421, 442, 1033
PspGI CCWGG 4 cut(s) 340, 421, 442, 1033
PspN4I GGNNCC 5 cut(s) 126, 288, 339, 450, 573
PspPI GGNCC 2 cut(s) 329, 644
PspPPI RGGWCCY 1 cut(s) 644
PstNI CAGNNNCTG 1 cut(s) 647
PsuI RGATCY 3 cut(s) 77, 571, 972
RseI CAYNNNNRTG 1 cut(s) 194
SaqAI TTAA 3 cut(s) 633, 861, 978
SatI GCNGC 1 cut(s) 595
Sau3AI GATC 6 cut(s) 77, 367, 571, 636, 657, 972
Sau96I GGNCC 2 cut(s) 329, 644
ScrFI CCNGG 6 cut(s) 342, 423, 444, 562, 621, 1035
SduI GDGCHC 5 cut(s) 127, 214, 451, 1000, 1020
SfaNI GCATC 4 cut(s) 52, 74, 488, 1020
SfcI CTRYAG 1 cut(s) 252
SinI GGWCC 1 cut(s) 644
SmiMI CAYNNNNRTG 1 cut(s) 194
SmlI CTYRAG 2 cut(s) 860, 1019
SmoI CTYRAG 2 cut(s) 860, 1019
SpeI ACTAGT 1 cut(s) 518
Sse9I AATT 7 cut(s) 414, 630, 779, 845, 877, 951, 1038
SsiI CCGC 2 cut(s) 159, 297
SspMI CTAG 1 cut(s) 519
StyD4I CCNGG 6 cut(s) 340, 421, 442, 560, 619, 1033
TaaI ACNGT 2 cut(s) 46, 965
TaiI ACGT 1 cut(s) 102
TasI AATT 7 cut(s) 414, 630, 779, 845, 877, 951, 1038
Tru1I TTAA 3 cut(s) 633, 861, 978
Tru9I TTAA 3 cut(s) 633, 861, 978
TscAI CASTG 4 cut(s) 201, 721, 970, 1127
TseFI GTSAC 1 cut(s) 110
TseI GCWGC 1 cut(s) 594
Tsp45I GTSAC 1 cut(s) 110
TspDTI ATGAA 2 cut(s) 745, 855
TspGWI ACGGA 1 cut(s) 521
TspRI CASTG 4 cut(s) 201, 721, 970, 1127
Vha464I CTTAAG 1 cut(s) 860
VneI GTGCAC 1 cut(s) 210
VpaK11BI GGWCC 1 cut(s) 644
XagI CCTNNNNNAGG 1 cut(s) 1054
XapI RAATTY 3 cut(s) 779, 845, 1038
XceI RCATGY 2 cut(s) 193, 1130
XmnI GAANNNNTTC 1 cut(s) 765
XspI CTAG 1 cut(s) 519
Zsp2I ATGCAT 2 cut(s) 67, 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.