Rh5BG123100

Ferredoxin-NADP reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0006772
Physical Location & Seq
Forward (+)
11593689 .. 11596914
3226 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG123100.1

Sequence Viewer

Length: 954 bp
ATGTCAGTGCAACAAGCAAGTGCACCAAAAGTTGCTGTGTCTCCTTTAGAACTTGACAATGCTACAGAACCCCCATTGAATATATACAAGCCGAAGGAACCTTATACCGCAACCATTTTATCTGTTGAGAGGATTGTCGGCCCAAGGGCTCCTGGAGAAACTTGCCATATAGTGATTGATCATGGTGGTAATGTTCCCTACTGGGAAGGACAAAGTTATGGTGTGATCCCTCCTGGTGAAAACCCAAAGAAACCTGGGGCTCCACACAATGTCCGTCTTTACTCAATTGCATCGACAAGGTATGGAGACTATTTTGATGGCAAGACAACTAGTTTGTGTGTCCGTCGTGCTGTCTATTATGACCCAGAGACAGGGAAGGAGGATCCCTCCAAAAATGGTGTATGCAGCAACTATTTATGTAACTCTAAACCCGGAGATAAAATTAAGATCACAGGTCCTGCTGGCAAGATCATGCTCCTGCCTGAAGACAACCCCAATGCCACCCACATCATGATTGCCACCGGCACTGGTGTTGCTCCATACAGAGGTTACCTTCGTCGTATGTTCATGGAAGCTGTTCCTACATTCAAGTTTGGTGGCCTTGCATGGCTGTTCCTTGGTGTGGCCAATACCGACAGCCTCCTCTATGATGAAGAATTCCGCAAGTATCTCAAGGACTACCCCGATAATTTCCGATACGACATAGCACTTAGTAGAGAACAAAAGAACAAGAGAGGAGGAAAGATGTATGTTCAGGATAAAATTGAAGAATACAGTGATGAGATCTTTAAACTCTTGGATGGTGGGGCCCATATCTACTTCTGTGGGCTCAAGGGTATGATGCCTGGAATTCAAGAAACCTTGAAGAGGGTTGCAGAAGAAAGAGGGGAAAGTTGGGAGGAGAAGCTTTCACAACTGAAGAAGAATAAGCAATGGCATGTTGAAGTTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00195 ko01100 map00195 map01100
Pfam Domains
Protein Families
NAD_binding_1

Protein Analysis

317

Amino Acids

35.63

Weight (kDa)

7.59

Isoelectric Point (pI)

44.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAD_binding_1 PF00175 171 - 285 4.5e-25 Oxidoreductase NAD-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 108, 661
AclWI GGATC 3 cut(s) 220, 377, 390
AcoI YGGCCR 1 cut(s) 624
AcsI RAATTY 2 cut(s) 656, 849
AcuI CTGAAG 2 cut(s) 504, 938
AfiI CCNNNNNNNGG 4 cut(s) 371, 545, 622, 867
AgsI TTSAA 6 cut(s) 79, 589, 767, 854, 865, 944
AhlI ACTAGT 1 cut(s) 329
AjnI CCWGG 4 cut(s) 151, 232, 253, 844
AluBI AGCT 2 cut(s) 575, 907
AluI AGCT 2 cut(s) 575, 907
Alw21I GWGCWC 1 cut(s) 25
Alw26I GTCTC 3 cut(s) 45, 300, 362
Alw44I GTGCAC 1 cut(s) 21
AlwI GGATC 3 cut(s) 220, 377, 390
AlwNI CAGNNNCTG 1 cut(s) 458
AoxI GGCC 4 cut(s) 139, 598, 624, 807
ApaI GGGCCC 1 cut(s) 811
ApaLI GTGCAC 1 cut(s) 21
ApeKI GCWGC 1 cut(s) 405
ApoI RAATTY 2 cut(s) 656, 849
ArsI GACNNNNNNTTYG 2 cut(s) 316, 348
Asp700I GAANNNNTTC 1 cut(s) 576
AspS9I GGNCC 4 cut(s) 140, 455, 807, 808
AsuC2I CCSGG 1 cut(s) 432
AsuHPI GGTGA 1 cut(s) 248
AvaII GGWCC 1 cut(s) 455
BaeGI GKGCMC 2 cut(s) 25, 811
BalI TGGCCA 1 cut(s) 626
BamHI GGATCC 1 cut(s) 382
BanII GRGCYC 4 cut(s) 151, 262, 811, 831
BbsI GAAGAC 1 cut(s) 492
Bbv12I GWGCWC 1 cut(s) 25
BbvI GCAGC 1 cut(s) 417
BccI CCATC 2 cut(s) 311, 794
BciT130I CCWGG 4 cut(s) 153, 234, 255, 846
BclI TGATCA 1 cut(s) 178
BcnI CCSGG 1 cut(s) 432
BcoDI GTCTC 3 cut(s) 45, 300, 362
BcuI ACTAGT 1 cut(s) 329
BfaI CTAG 1 cut(s) 330
BfmI CTRYAG 1 cut(s) 63
BglII AGATCT 1 cut(s) 783
BisI GCNGC 1 cut(s) 406
BlsI GCNGC 1 cut(s) 407
Bme1390I CCNGG 5 cut(s) 153, 234, 255, 432, 846
Bme18I GGWCC 1 cut(s) 455
BmgT120I GGNCC 4 cut(s) 140, 455, 807, 808
BmiI GGNNCC 6 cut(s) 99, 150, 261, 384, 808, 809
BmrFI CCNGG 5 cut(s) 153, 234, 255, 432, 846
BmrI ACTGGG 1 cut(s) 211
BmsI GCATC 2 cut(s) 299, 831
BmuI ACTGGG 1 cut(s) 211
BpiI GAAGAC 1 cut(s) 492
BplI GAGNNNNNCTC 2 cut(s) 371, 403
BpmI CTGGAG 1 cut(s) 174
BpuEI CTTGAG 2 cut(s) 656, 815
BpuMI CCSGG 1 cut(s) 432
BsaJI CCNNGG 3 cut(s) 143, 254, 616
Bsc4I CCNNNNNNNGG 4 cut(s) 371, 545, 622, 867
Bse118I RCCGGY 1 cut(s) 521
Bse1I ACTGG 2 cut(s) 206, 532
Bse3DI GCAATG 1 cut(s) 938
BseBI CCWGG 4 cut(s) 153, 234, 255, 846
BseDI CCNNGG 3 cut(s) 143, 254, 616
BseGI GGATG 1 cut(s) 805
BseLI CCNNNNNNNGG 4 cut(s) 371, 545, 622, 867
BseMI GCAATG 1 cut(s) 938
BseNI ACTGG 2 cut(s) 206, 532
BseRI GAGGAG 3 cut(s) 632, 750, 914
BseSI GKGCMC 2 cut(s) 25, 811
BseXI GCAGC 1 cut(s) 417
BshFI GGCC 4 cut(s) 141, 600, 626, 809
BsiHKAI GWGCWC 1 cut(s) 25
BsiSI CCGG 2 cut(s) 432, 522
BslI CCNNNNNNNGG 4 cut(s) 371, 545, 622, 867
BsmAI GTCTC 3 cut(s) 45, 300, 362
BsnI GGCC 4 cut(s) 141, 600, 626, 809
Bsp120I GGGCCC 1 cut(s) 807
Bsp1286I GDGCHC 5 cut(s) 25, 151, 262, 811, 831
Bsp143I GATC 6 cut(s) 178, 225, 382, 447, 468, 783
BspACI CCGC 2 cut(s) 108, 661
BspANI GGCC 4 cut(s) 141, 600, 626, 809
BspHI TCATGA 1 cut(s) 510
BspLI GGNNCC 6 cut(s) 99, 150, 261, 384, 808, 809
BspPI GGATC 3 cut(s) 220, 377, 390
BsrDI GCAATG 1 cut(s) 938
BsrFI RCCGGY 1 cut(s) 521
BsrI ACTGG 2 cut(s) 206, 532
BssAI RCCGGY 1 cut(s) 521
BssECI CCNNGG 3 cut(s) 143, 254, 616
BssMI GATC 6 cut(s) 178, 225, 382, 447, 468, 783
BssT1I CCWWGG 2 cut(s) 143, 616
Bst2UI CCWGG 4 cut(s) 153, 234, 255, 846
Bst4CI ACNGT 1 cut(s) 776
Bst6I CTCTTC 1 cut(s) 860
BstC8I GCNNGC 1 cut(s) 463
BstDEI CTNAG 1 cut(s) 710
BstEII GGTNACC 1 cut(s) 548
BstENI CCTNNNNNAGG 1 cut(s) 865
BstF5I GGATG 1 cut(s) 805
BstKTI GATC 6 cut(s) 181, 228, 385, 450, 471, 786
BstMAI GTCTC 3 cut(s) 45, 300, 362
BstMBI GATC 6 cut(s) 178, 225, 382, 447, 468, 783
BstNI CCWGG 4 cut(s) 153, 234, 255, 846
BstNSI RCATGY 1 cut(s) 941
BstPI GGTNACC 1 cut(s) 548
BstSCI CCNGG 5 cut(s) 151, 232, 253, 430, 844
BstSFI CTRYAG 1 cut(s) 63
BstSLI GKGCMC 2 cut(s) 25, 811
BstV1I GCAGC 1 cut(s) 417
BstV2I GAAGAC 1 cut(s) 492
BstX2I RGATCY 2 cut(s) 382, 783
BstYI RGATCY 2 cut(s) 382, 783
BsuRI GGCC 4 cut(s) 141, 600, 626, 809
BtsCI GGATG 1 cut(s) 805
BtsIMutI CAGTG 3 cut(s) 12, 525, 781
Cac8I GCNNGC 1 cut(s) 463
CaiI CAGNNNCTG 1 cut(s) 458
CciI TCATGA 1 cut(s) 510
Cfr10I RCCGGY 1 cut(s) 521
Cfr13I GGNCC 4 cut(s) 140, 455, 807, 808
CspCI CAANNNNNGTGG 2 cut(s) 577, 612
CviAII CATG 6 cut(s) 182, 472, 511, 568, 606, 938
DdeI CTNAG 1 cut(s) 710
DpnI GATC 6 cut(s) 180, 227, 384, 449, 470, 785
DpnII GATC 6 cut(s) 178, 225, 382, 447, 468, 783
DraI TTTAAA 1 cut(s) 790
EaeI YGGCCR 1 cut(s) 624
Eam1104I CTCTTC 1 cut(s) 860
EarI CTCTTC 1 cut(s) 860
Eco130I CCWWGG 2 cut(s) 143, 616
Eco24I GRGCYC 4 cut(s) 151, 262, 811, 831
Eco47I GGWCC 1 cut(s) 455
Eco57I CTGAAG 2 cut(s) 504, 938
Eco91I GGTNACC 1 cut(s) 548
EcoNI CCTNNNNNAGG 1 cut(s) 865
EcoO109I RGGNCCY 2 cut(s) 455, 807
EcoO65I GGTNACC 1 cut(s) 548
EcoRI GAATTC 2 cut(s) 656, 849
EcoRII CCWGG 4 cut(s) 151, 232, 253, 844
EcoT14I CCWWGG 2 cut(s) 143, 616
EcoT38I GRGCYC 4 cut(s) 151, 262, 811, 831
ErhI CCWWGG 2 cut(s) 143, 616
FaeI CATG 6 cut(s) 185, 475, 514, 571, 609, 941
FatI CATG 6 cut(s) 181, 471, 510, 567, 605, 937
FbaI TGATCA 1 cut(s) 178
Fnu4HI GCNGC 1 cut(s) 406
FokI GGATG 1 cut(s) 812
FriOI GRGCYC 4 cut(s) 151, 262, 811, 831
Fsp4HI GCNGC 1 cut(s) 406
FspBI CTAG 1 cut(s) 330
GluI GCNGC 1 cut(s) 406
GsuI CTGGAG 1 cut(s) 174
HaeIII GGCC 4 cut(s) 141, 600, 626, 809
HapII CCGG 2 cut(s) 432, 522
Hin1II CATG 6 cut(s) 185, 475, 514, 571, 609, 941
HindIII AAGCTT 1 cut(s) 905
HpaII CCGG 2 cut(s) 432, 522
HphI GGTGA 1 cut(s) 248
Hpy166II GTNNAC 2 cut(s) 23, 949
Hpy188I TCNGA 1 cut(s) 695
Hpy188III TCNNGA 3 cut(s) 511, 755, 854
Hpy8I GTNNAC 2 cut(s) 23, 949
Hpy99I CGWCG 2 cut(s) 348, 561
HpyAV CCTTC 4 cut(s) 88, 200, 370, 563
HpyCH4III ACNGT 1 cut(s) 776
HpyCH4V TGCA 6 cut(s) 10, 23, 290, 405, 605, 875
HpyF3I CTNAG 1 cut(s) 710
Hsp92II CATG 6 cut(s) 185, 475, 514, 571, 609, 941
Ksp22I TGATCA 1 cut(s) 178
Kzo9I GATC 6 cut(s) 178, 225, 382, 447, 468, 783
LmnI GCTCC 4 cut(s) 154, 265, 480, 541
Lsp1109I GCAGC 1 cut(s) 417
LweI GCATC 2 cut(s) 299, 831
MaeI CTAG 1 cut(s) 330
MaeIII GTNAC 2 cut(s) 419, 548
MalI GATC 6 cut(s) 180, 227, 384, 449, 470, 785
MboI GATC 6 cut(s) 178, 225, 382, 447, 468, 783
MboII GAAGA 7 cut(s) 497, 665, 779, 877, 890, 931, 934
MfeI CAATTG 1 cut(s) 285
MflI RGATCY 2 cut(s) 382, 783
MhlI GDGCHC 5 cut(s) 25, 151, 262, 811, 831
MlsI TGGCCA 1 cut(s) 626
MluCI AATT 6 cut(s) 285, 441, 656, 688, 762, 849
MluNI TGGCCA 1 cut(s) 626
Mox20I TGGCCA 1 cut(s) 626
MroXI GAANNNNTTC 1 cut(s) 576
MscI TGGCCA 1 cut(s) 626
MseI TTAA 2 cut(s) 444, 789
Msp20I TGGCCA 1 cut(s) 626
MspI CCGG 2 cut(s) 432, 522
MspR9I CCNGG 5 cut(s) 153, 234, 255, 432, 846
MunI CAATTG 1 cut(s) 285
MvaI CCWGG 4 cut(s) 153, 234, 255, 846
NciI CCSGG 1 cut(s) 432
NdeII GATC 6 cut(s) 178, 225, 382, 447, 468, 783
NlaIII CATG 6 cut(s) 185, 475, 514, 571, 609, 941
NlaIV GGNNCC 6 cut(s) 99, 150, 261, 384, 808, 809
NspI RCATGY 1 cut(s) 941
PagI TCATGA 1 cut(s) 510
PdmI GAANNNNTTC 1 cut(s) 576
PfoI TCCNGGA 1 cut(s) 151
PkrI GCNGC 1 cut(s) 407
PpuMI RGGWCCY 1 cut(s) 455
Psp5II RGGWCCY 1 cut(s) 455
Psp6I CCWGG 4 cut(s) 151, 232, 253, 844
PspEI GGTNACC 1 cut(s) 548
PspGI CCWGG 4 cut(s) 151, 232, 253, 844
PspN4I GGNNCC 6 cut(s) 99, 150, 261, 384, 808, 809
PspOMI GGGCCC 1 cut(s) 807
PspPI GGNCC 4 cut(s) 140, 455, 807, 808
PspPPI RGGWCCY 1 cut(s) 455
PstNI CAGNNNCTG 1 cut(s) 458
PsuI RGATCY 2 cut(s) 382, 783
SaqAI TTAA 2 cut(s) 444, 789
SatI GCNGC 1 cut(s) 406
Sau3AI GATC 6 cut(s) 178, 225, 382, 447, 468, 783
Sau96I GGNCC 4 cut(s) 140, 455, 807, 808
ScrFI CCNGG 5 cut(s) 153, 234, 255, 432, 846
SduI GDGCHC 5 cut(s) 25, 151, 262, 811, 831
SetI ASST 9 cut(s) 103, 256, 302, 457, 550, 555, 577, 863, 909
SfaNI GCATC 2 cut(s) 299, 831
SfcI CTRYAG 1 cut(s) 63
SinI GGWCC 1 cut(s) 455
SmlI CTYRAG 2 cut(s) 671, 830
SmoI CTYRAG 2 cut(s) 671, 830
SpeI ACTAGT 1 cut(s) 329
Sse9I AATT 6 cut(s) 285, 441, 656, 688, 762, 849
SsiI CCGC 2 cut(s) 108, 661
SspMI CTAG 1 cut(s) 330
StyD4I CCNGG 5 cut(s) 151, 232, 253, 430, 844
StyI CCWWGG 2 cut(s) 143, 616
TaaI ACNGT 1 cut(s) 776
TaqI TCGA 1 cut(s) 293
TasI AATT 6 cut(s) 285, 441, 656, 688, 762, 849
Tru1I TTAA 2 cut(s) 444, 789
Tru9I TTAA 2 cut(s) 444, 789
TscAI CASTG 3 cut(s) 12, 532, 781
TseI GCWGC 1 cut(s) 405
TspDTI ATGAA 2 cut(s) 556, 666
TspGWI ACGGA 2 cut(s) 263, 332
TspRI CASTG 3 cut(s) 12, 532, 781
VneI GTGCAC 1 cut(s) 21
VpaK11BI GGWCC 1 cut(s) 455
XagI CCTNNNNNAGG 1 cut(s) 865
XapI RAATTY 2 cut(s) 656, 849
XceI RCATGY 1 cut(s) 941
XmnI GAANNNNTTC 1 cut(s) 576
XspI CTAG 1 cut(s) 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.