Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0006772

Physical Location & Seq

Genomic Coordinates Forward (+)

4502585 .. 4506228

Gene Structure 3644 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G090300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGTCTCATTTGGCTATCTCTCAGGGTTCACTTACTGCTCCTGTTGGAAGCGATTTTTCTATCAGAAGATCAGTGTTCAAGGCACAAAGCATAAACTTTAATGATAAATCATGGGCACCTCTTTTATCTTTGGACTTGAAAACAAAGAATGGGGGGCTGAGAAATCAGCGGATAGTATGCATGTCAGTGCAACAAGCAAGTGTTCCTAAAGTTGCTGTATCTCCTCTACAACTTGAAGATGCTAATGAGCCCCCATTGAATACATACAAGCCTAAGGAACCTTATACTGCAACCATTCGTTCTGTTGAGAGGATTGTAGGCCCAAAGGCTCCTGGAGAGACCTGCCATATTGTAATCGATCATGGTGGTAATGTTCCCTACTGGGAAGGGCAAAGTTATGGTGTAATTCCTCCTGGTGAAAACCCAAAGAAACCTGGGGCTCCACAAAATGTTCGTCTTTACTCAATTGCATCCTCAAGGTATGGAGACTATTTTGATGGCAAGACGACCAGTTTGTGTGTCCGCCGTGCTGTCTATTACGACCCTGAGACAGGAAAGGAGGATCCTTCCAAGAATGGTGTGTGCAGCAATTTTTTGTGCAACTCCAAACCAGGAGATAAAATTAAGATCACAGGGCCTGCTGGCAAGATCATGCTTTTGCCTGAAGACAACCCAAATGCCACCCACATTATGATTGCCACCGGCACTGGTGTCGCACCATACAGAGGTTACCTTCGACGCATGTTCATGGAATCTGTTCCCAAATTCAAGTTTGGCGGCCTTGCATGGCTATTCCTTGGTGTGGCCAATACTGATAGTCTCCTCTATGATGAAGAGTTCACCAAGTATCTCAAGGACTACCCTGATAATTTCCGGTACGACATAGCGCTAAGTAGAGAACATAAGAACAATAGAGGAGGGAAGATGTATGTTCAGGATAAAATTGAAGAGTACAGTGATGAGATCTTCAAGCTCTTGGATAATGGAGCCCACATATATTTCTGTGGGCTCAGGGGAATGATGCCTGGGATTCAAGAAACCTTGAAGAGGGTTGCGGATGGAAGAGGGGAGAACTGGGAGGAGAAGCTTTCACAACTGAAAAAGAACAAGCAATGGCATGTGGAAGTCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

NAD_binding_1

Protein Analysis

378

Amino Acids

42.22

Weight (kDa)

8.88

Isoelectric Point (pI)

43.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30510 AT1G30510 AT1G30510 AT4G05390 AT4G05390
fragaria_vesca	FvH4_3g10090 FvH4_3g10090
malus_domestica	MD05G1273100.v1.1 MD10G1253200.v1.1
prunus_persica	Prupe.4G090300_v2.0.a1
pyrus_communis	pycom05g25490 pycom10g20890
rosa_chinensis	RchiOBHm_Chr5g0016001
rosa_laevigata	RLG00000032234
rosa_multiflora	Rmu_co8509133.1_g000001 Rmu_sc0000299.1_g000024 Rmu_sc0001878.1_g000003 Rmu_sc0021845.1_g000003
rosa_roxburghii	Rroxscaffold_1G00060640
rosa_rugosa	Rorug05G0030700 Rorug05G0030700
rosa_samantha	Rh5AG124100 Rh5BG123100 Rh5CG134500 Rh5DG122500
rosa_wichuraiana	Rw5G010720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	350
AccB1I	GGYRCC	1 cut(s)	115
AciI	CCGC	4 cut(s)	169, 523, 777, 1055
AclWI	GGATC	2 cut(s)	557, 570
AcoI	YGGCCR	1 cut(s)	804
AcsI	RAATTY	1 cut(s)	764
AcuI	CTGAAG	1 cut(s)	684
AfaI	GTAC	2 cut(s)	878, 953
AfeI	AGCGCT	1 cut(s)	888
AfiI	CCNNNNNNNGG	4 cut(s)	551, 725, 802, 1047
AgsI	TTSAA	9 cut(s)	79, 139, 236, 259, 769, 947, 970, 1034, 1045
AjnI	CCWGG	5 cut(s)	331, 412, 433, 610, 1024
AluBI	AGCT	2 cut(s)	973, 1087
AluI	AGCT	2 cut(s)	973, 1087
Alw26I	GTCTC	5 cut(s)	9, 332, 480, 542, 824
AlwI	GGATC	2 cut(s)	557, 570
AlwNI	CAGNNNCTG	1 cut(s)	638
Aor51HI	AGCGCT	1 cut(s)	888
AoxI	GGCC	4 cut(s)	319, 635, 778, 804
ApeKI	GCWGC	1 cut(s)	585
ApoI	RAATTY	1 cut(s)	764
ArsI	GACNNNNNNTTYG	4 cut(s)	439, 471, 496, 528
Asp700I	GAANNNNTTC	1 cut(s)	756
AspLEI	GCGC	1 cut(s)	889
AspS9I	GGNCC	2 cut(s)	320, 635
AsuHPI	GGTGA	2 cut(s)	428, 832
AxyI	CCTNAGG	1 cut(s)	273
BaeGI	GKGCMC	1 cut(s)	118
BalI	TGGCCA	1 cut(s)	806
BamHI	GGATCC	1 cut(s)	562
BanI	GGYRCC	1 cut(s)	115
BanII	GRGCYC	4 cut(s)	252, 442, 991, 1011
BbsI	GAAGAC	1 cut(s)	672
BbvI	GCAGC	1 cut(s)	597
BccI	CCATC	2 cut(s)	491, 1052
BceAI	ACGGC	1 cut(s)	510
BcgI	CGANNNNNNTGC	2 cut(s)	694, 728
BciT130I	CCWGG	5 cut(s)	333, 414, 435, 612, 1026
BcoDI	GTCTC	5 cut(s)	9, 332, 480, 542, 824
BfoI	RGCGCY	1 cut(s)	890
BfuAI	ACCTGC	1 cut(s)	350
BglII	AGATCT	1 cut(s)	963
BisI	GCNGC	2 cut(s)	586, 778
BlsI	GCNGC	2 cut(s)	587, 779
Bme1390I	CCNGG	5 cut(s)	333, 414, 435, 612, 1026
BmgT120I	GGNCC	2 cut(s)	320, 635
BmiI	GGNNCC	6 cut(s)	117, 279, 330, 441, 564, 988
BmrFI	CCNGG	5 cut(s)	333, 414, 435, 612, 1026
BmrI	ACTGGG	2 cut(s)	391, 1084
BmsI	GCATC	3 cut(s)	229, 479, 1011
BmuI	ACTGGG	2 cut(s)	391, 1084
BpiI	GAAGAC	1 cut(s)	672
BpmI	CTGGAG	1 cut(s)	354
Bpu10I	CCTNAGC	1 cut(s)	1010
BpuEI	CTTGAG	2 cut(s)	460, 836
Bsa29I	ATCGAT	1 cut(s)	357
BsaI	GGTCTC	1 cut(s)	332
BsaJI	CCNNGG	3 cut(s)	434, 796, 1025
BsaWI	WCCGGW	1 cut(s)	873
Bsc4I	CCNNNNNNNGG	4 cut(s)	551, 725, 802, 1047
Bse118I	RCCGGY	1 cut(s)	701
Bse1I	ACTGG	4 cut(s)	386, 510, 712, 1079
Bse21I	CCTNAGG	1 cut(s)	273
Bse3DI	GCAATG	1 cut(s)	1118
BseBI	CCWGG	5 cut(s)	333, 414, 435, 612, 1026
BseCI	ATCGAT	1 cut(s)	357
BseDI	CCNNGG	3 cut(s)	434, 796, 1025
BseGI	GGATG	2 cut(s)	470, 1063
BseLI	CCNNNNNNNGG	4 cut(s)	551, 725, 802, 1047
BseMI	GCAATG	1 cut(s)	1118
BseMII	CTCAG	4 cut(s)	35, 149, 537, 1024
BseNI	ACTGG	4 cut(s)	386, 510, 712, 1079
BseRI	GAGGAG	4 cut(s)	213, 812, 930, 1094
BseSI	GKGCMC	1 cut(s)	118
BseXI	GCAGC	1 cut(s)	597
BsgI	GTGCAG	1 cut(s)	604
BshFI	GGCC	4 cut(s)	321, 637, 780, 806
BshNI	GGYRCC	1 cut(s)	115
BshVI	ATCGAT	1 cut(s)	357
BsiSI	CCGG	2 cut(s)	702, 874
BslI	CCNNNNNNNGG	4 cut(s)	551, 725, 802, 1047
BsmAI	GTCTC	5 cut(s)	9, 332, 480, 542, 824
BsnI	GGCC	4 cut(s)	321, 637, 780, 806
Bso31I	GGTCTC	1 cut(s)	332
Bsp1286I	GDGCHC	5 cut(s)	118, 252, 442, 991, 1011
Bsp143I	GATC	6 cut(s)	68, 358, 562, 627, 648, 963
BspACI	CCGC	4 cut(s)	169, 523, 777, 1055
BspANI	GGCC	4 cut(s)	321, 637, 780, 806
BspCNI	CTCAG	4 cut(s)	34, 150, 538, 1023
BspDI	ATCGAT	1 cut(s)	357
BspLI	GGNNCC	6 cut(s)	117, 279, 330, 441, 564, 988
BspMI	ACCTGC	1 cut(s)	350
BspPI	GGATC	2 cut(s)	557, 570
BspT107I	GGYRCC	1 cut(s)	115
BspTNI	GGTCTC	1 cut(s)	332
BsrDI	GCAATG	1 cut(s)	1118
BsrFI	RCCGGY	1 cut(s)	701
BsrI	ACTGG	4 cut(s)	386, 510, 712, 1079
BssAI	RCCGGY	1 cut(s)	701
BssECI	CCNNGG	3 cut(s)	434, 796, 1025
BssMI	GATC	6 cut(s)	68, 358, 562, 627, 648, 963
BssT1I	CCWWGG	1 cut(s)	796
Bst2UI	CCWGG	5 cut(s)	333, 414, 435, 612, 1026
Bst4CI	ACNGT	1 cut(s)	956
Bst6I	CTCTTC	4 cut(s)	828, 942, 1040, 1057
BstC8I	GCNNGC	2 cut(s)	639, 643
BstDEI	CTNAG	6 cut(s)	21, 158, 273, 546, 890, 1010
BstEII	GGTNACC	1 cut(s)	728
BstENI	CCTNNNNNAGG	2 cut(s)	549, 1045
BstF5I	GGATG	2 cut(s)	470, 1063
BstH2I	RGCGCY	1 cut(s)	890
BstHHI	GCGC	1 cut(s)	889
BstKTI	GATC	6 cut(s)	71, 361, 565, 630, 651, 966
BstMAI	GTCTC	5 cut(s)	9, 332, 480, 542, 824
BstMBI	GATC	6 cut(s)	68, 358, 562, 627, 648, 963
BstNI	CCWGG	5 cut(s)	333, 414, 435, 612, 1026
BstNSI	RCATGY	3 cut(s)	184, 745, 1121
BstPI	GGTNACC	1 cut(s)	728
BstSCI	CCNGG	5 cut(s)	331, 412, 433, 610, 1024
BstSLI	GKGCMC	1 cut(s)	118
BstV1I	GCAGC	1 cut(s)	597
BstV2I	GAAGAC	1 cut(s)	672
BstX2I	RGATCY	2 cut(s)	562, 963
BstYI	RGATCY	2 cut(s)	562, 963
Bsu15I	ATCGAT	1 cut(s)	357
Bsu36I	CCTNAGG	1 cut(s)	273
BsuRI	GGCC	4 cut(s)	321, 637, 780, 806
BsuTUI	ATCGAT	1 cut(s)	357
BtsCI	GGATG	2 cut(s)	470, 1063
BtsIMutI	CAGTG	4 cut(s)	78, 192, 705, 961
BveI	ACCTGC	1 cut(s)	350
Cac8I	GCNNGC	2 cut(s)	639, 643
CaiI	CAGNNNCTG	1 cut(s)	638
CfoI	GCGC	1 cut(s)	889
Cfr10I	RCCGGY	1 cut(s)	701
Cfr13I	GGNCC	2 cut(s)	320, 635
ClaI	ATCGAT	1 cut(s)	357
CseI	GACGC	1 cut(s)	747
Csp6I	GTAC	2 cut(s)	877, 952
CviAII	CATG	8 cut(s)	111, 181, 362, 652, 742, 748, 786, 1118
CviQI	GTAC	2 cut(s)	877, 952
DdeI	CTNAG	6 cut(s)	21, 158, 273, 546, 890, 1010
DpnI	GATC	6 cut(s)	70, 360, 564, 629, 650, 965
DpnII	GATC	6 cut(s)	68, 358, 562, 627, 648, 963
EaeI	YGGCCR	1 cut(s)	804
Eam1104I	CTCTTC	4 cut(s)	828, 942, 1040, 1057
EarI	CTCTTC	4 cut(s)	828, 942, 1040, 1057
EciI	GGCGGA	1 cut(s)	512
Eco130I	CCWWGG	1 cut(s)	796
Eco24I	GRGCYC	4 cut(s)	252, 442, 991, 1011
Eco31I	GGTCTC	1 cut(s)	332
Eco47III	AGCGCT	1 cut(s)	888
Eco57I	CTGAAG	1 cut(s)	684
Eco81I	CCTNAGG	1 cut(s)	273
Eco91I	GGTNACC	1 cut(s)	728
EcoNI	CCTNNNNNAGG	2 cut(s)	549, 1045
EcoO109I	RGGNCCY	1 cut(s)	635
EcoO65I	GGTNACC	1 cut(s)	728
EcoRII	CCWGG	5 cut(s)	331, 412, 433, 610, 1024
EcoT14I	CCWWGG	1 cut(s)	796
EcoT22I	ATGCAT	1 cut(s)	182
EcoT38I	GRGCYC	4 cut(s)	252, 442, 991, 1011
ErhI	CCWWGG	1 cut(s)	796
FaeI	CATG	8 cut(s)	114, 184, 365, 655, 745, 751, 789, 1121
FatI	CATG	8 cut(s)	110, 180, 361, 651, 741, 747, 785, 1117
Fnu4HI	GCNGC	2 cut(s)	586, 778
FokI	GGATG	2 cut(s)	457, 1070
FriOI	GRGCYC	4 cut(s)	252, 442, 991, 1011
Fsp4HI	GCNGC	2 cut(s)	586, 778
GlaI	GCGC	1 cut(s)	888
GluI	GCNGC	2 cut(s)	586, 778
GsuI	CTGGAG	1 cut(s)	354
HaeII	RGCGCY	1 cut(s)	890
HaeIII	GGCC	4 cut(s)	321, 637, 780, 806
HapII	CCGG	2 cut(s)	702, 874
HgaI	GACGC	1 cut(s)	747
HhaI	GCGC	1 cut(s)	889
Hin1II	CATG	8 cut(s)	114, 184, 365, 655, 745, 751, 789, 1121
Hin6I	GCGC	1 cut(s)	887
HinP1I	GCGC	1 cut(s)	887
HindIII	AAGCTT	1 cut(s)	1085
HinfI	GANTC	2 cut(s)	752, 1030
HpaII	CCGG	2 cut(s)	702, 874
HphI	GGTGA	2 cut(s)	428, 832
Hpy166II	GTNNAC	2 cut(s)	29, 840
Hpy188I	TCNGA	1 cut(s)	65
Hpy188III	TCNNGA	2 cut(s)	935, 1034
Hpy8I	GTNNAC	2 cut(s)	29, 840
Hpy99I	CGWCG	1 cut(s)	741
HpyAV	CCTTC	3 cut(s)	380, 576, 743
HpyCH4III	ACNGT	1 cut(s)	956
HpyCH4V	TGCA	7 cut(s)	180, 190, 290, 470, 585, 600, 785
HpyF3I	CTNAG	6 cut(s)	21, 158, 273, 546, 890, 1010
Hsp92II	CATG	8 cut(s)	114, 184, 365, 655, 745, 751, 789, 1121
HspAI	GCGC	1 cut(s)	887
Kzo9I	GATC	6 cut(s)	68, 358, 562, 627, 648, 963
LmnI	GCTCC	4 cut(s)	43, 334, 445, 986
Lsp1109I	GCAGC	1 cut(s)	597
LweI	GCATC	3 cut(s)	229, 479, 1011
MaeIII	GTNAC	1 cut(s)	728
MalI	GATC	6 cut(s)	70, 360, 564, 629, 650, 965
MboI	GATC	6 cut(s)	68, 358, 562, 627, 648, 963
MboII	GAAGA	9 cut(s)	78, 248, 677, 845, 934, 958, 959, 1057, 1074
MfeI	CAATTG	1 cut(s)	465
MflI	RGATCY	2 cut(s)	562, 963
MhlI	GDGCHC	5 cut(s)	118, 252, 442, 991, 1011
MlsI	TGGCCA	1 cut(s)	806
MluCI	AATT	7 cut(s)	405, 465, 589, 621, 764, 868, 942
MluNI	TGGCCA	1 cut(s)	806
MmeI	TCCRAC	1 cut(s)	25
Mox20I	TGGCCA	1 cut(s)	806
Mph1103I	ATGCAT	1 cut(s)	182
MroXI	GAANNNNTTC	1 cut(s)	756
MscI	TGGCCA	1 cut(s)	806
MseI	TTAA	2 cut(s)	99, 624
MslI	CAYNNNNRTG	2 cut(s)	185, 746
Msp20I	TGGCCA	1 cut(s)	806
MspA1I	CMGCKG	1 cut(s)	169
MspI	CCGG	2 cut(s)	702, 874
MspR9I	CCNGG	5 cut(s)	333, 414, 435, 612, 1026
MunI	CAATTG	1 cut(s)	465
MvaI	CCWGG	5 cut(s)	333, 414, 435, 612, 1026
NdeII	GATC	6 cut(s)	68, 358, 562, 627, 648, 963
NlaIII	CATG	8 cut(s)	114, 184, 365, 655, 745, 751, 789, 1121
NlaIV	GGNNCC	6 cut(s)	117, 279, 330, 441, 564, 988
NsiI	ATGCAT	1 cut(s)	182
NspI	RCATGY	3 cut(s)	184, 745, 1121
PdmI	GAANNNNTTC	1 cut(s)	756
PfeI	GAWTC	2 cut(s)	752, 1030
PfoI	TCCNGGA	1 cut(s)	331
PkrI	GCNGC	2 cut(s)	587, 779
Psp6I	CCWGG	5 cut(s)	331, 412, 433, 610, 1024
PspEI	GGTNACC	1 cut(s)	728
PspGI	CCWGG	5 cut(s)	331, 412, 433, 610, 1024
PspN4I	GGNNCC	6 cut(s)	117, 279, 330, 441, 564, 988
PspPI	GGNCC	2 cut(s)	320, 635
PstNI	CAGNNNCTG	1 cut(s)	638
PsuI	RGATCY	2 cut(s)	562, 963
RsaI	GTAC	2 cut(s)	878, 953
RsaNI	GTAC	2 cut(s)	877, 952
RseI	CAYNNNNRTG	2 cut(s)	185, 746
SaqAI	TTAA	2 cut(s)	99, 624
SatI	GCNGC	2 cut(s)	586, 778
Sau3AI	GATC	6 cut(s)	68, 358, 562, 627, 648, 963
Sau96I	GGNCC	2 cut(s)	320, 635
ScrFI	CCNGG	5 cut(s)	333, 414, 435, 612, 1026
SduI	GDGCHC	5 cut(s)	118, 252, 442, 991, 1011
SfaNI	GCATC	3 cut(s)	229, 479, 1011
SmiMI	CAYNNNNRTG	2 cut(s)	185, 746
SmlI	CTYRAG	2 cut(s)	475, 851
SmoI	CTYRAG	2 cut(s)	475, 851
Sse9I	AATT	7 cut(s)	405, 465, 589, 621, 764, 868, 942
SsiI	CCGC	4 cut(s)	169, 523, 777, 1055
StyD4I	CCNGG	5 cut(s)	331, 412, 433, 610, 1024
StyI	CCWWGG	1 cut(s)	796
TaaI	ACNGT	1 cut(s)	956
TaqI	TCGA	2 cut(s)	357, 736
TasI	AATT	7 cut(s)	405, 465, 589, 621, 764, 868, 942
TatI	WGTACW	1 cut(s)	951
TauI	GCSGC	1 cut(s)	780
TfiI	GAWTC	2 cut(s)	752, 1030
Tru1I	TTAA	2 cut(s)	99, 624
Tru9I	TTAA	2 cut(s)	99, 624
TscAI	CASTG	4 cut(s)	78, 192, 712, 961
TseI	GCWGC	1 cut(s)	585
TspDTI	ATGAA	2 cut(s)	736, 846
TspRI	CASTG	4 cut(s)	78, 192, 712, 961
XagI	CCTNNNNNAGG	2 cut(s)	549, 1045
XapI	RAATTY	1 cut(s)	764
XceI	RCATGY	3 cut(s)	184, 745, 1121
XmnI	GAANNNNTTC	1 cut(s)	756
Zsp2I	ATGCAT	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.