Rroxscaffold_1G00060640

Ferredoxin-NADP reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0006772
Physical Location & Seq
Reverse (-)
82890706 .. 82894180
3475 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00060640.1

Sequence Viewer

Length: 1140 bp
ATGTCTCACTTGGCTCTTTCTCAGGTTTCACTTACTACTACTGTTCCTGCTGGAAGTGACTTATCTCTCAGAAGATCTGTCTTCAAGGCACAAAGTGTAAATTTTAGTGATAAATCATGGGCACCAGTTTCAACTTTGGACTTGAAAACAAAGAGTGGGCGGCTACGAAACAAGCGCATAGTATGCATGTCAGTGCAACAAGCAAGTGCACCAAAAGTTGCTGTGTCTCCTTTAGAACTTGACAATGCTACAGAACCCCCATTGAATATATACAAGCCTAAGGAACCTTATACCGCAACCATTTTATCCGTTGAGAGGATTGTCGGCCCAAGGGCTCCTGGAGAAACTTGCCATATAGTGATTGATCATGGTGGTAATGTTCCCTACTGGGAAGGACAAAGTTATGGTGTGATCCCTCCTGGTGAAAACCCAAAGAAACCTGGGGCTCCACACAATGTCCGTCTTTACTCAATTGCATCGACAAGGTATGGAGACTATTTCGATGGCAAGACAACTAGTTTGTGTGTCCGTCGTGCTGTCTATTATGACCCAGAGACAGGGAAGGAGGATCCCTCCAAAAATGGTGTATGCAGCAACTATTTATGCAACTCTAAACCCGGAGATAAAATTAAGATCACAGGTCCTGCTGGCAAGATCATGCTCCTGCCTGAAGACAACCCCAATGCCACCCACATTATGATTGCCACTGGCACTGGTGTTGCTCCATACAGAGGTTACCTTCGTCGTATGTTCATGGAAGCTGTTCCTACATTCAAGTTTGGTGGCCTTGCATGGTTGTTCCTTGGAGTGGCCAATACCGACAGCCTCCTCTATGATGAAGAATTCCGCAAGTATCTCAAGGACTACCCCGATAATTTCCGATACGACATAGCACTTAGTAGAGAACAAAAGAACAAGAGAGGAGGAAAGATGTATGTTCAGGATAAAATTGAAGAATACAGTGATGAGATCTTTAAACTATTGGATGGTGGGGCCCATATCTACTTCTGTGGGCTCAAGGGTATGATGCCTGGAATTCAAGAAACCTTGAAGAGGGTTGCAGAAGAAAGAGGGGAAAGTTGGGAGGAGAAGCTTTCACAACTGAAGAAGAATAAGCAATGGCATGTTGAAGTTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00195 ko01100 map00195 map01100
Pfam Domains
Protein Families
NAD_binding_1

Protein Analysis

379

Amino Acids

42.4

Weight (kDa)

8.95

Isoelectric Point (pI)

48.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAD_binding_1 PF00175 233 - 347 6.5e-25 Oxidoreductase NAD-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 121
AciI CCGC 3 cut(s) 160, 294, 847
AclWI GGATC 3 cut(s) 406, 563, 576
AcoI YGGCCR 1 cut(s) 810
AcsI RAATTY 3 cut(s) 100, 842, 1035
AcuI CTGAAG 2 cut(s) 690, 1124
AdeI CACNNNGTG 1 cut(s) 95
AfiI CCNNNNNNNGG 5 cut(s) 315, 557, 731, 808, 1053
AgsI TTSAA 9 cut(s) 85, 132, 145, 265, 775, 953, 1040, 1051, 1130
AhlI ACTAGT 1 cut(s) 515
AjnI CCWGG 4 cut(s) 337, 418, 439, 1030
AluBI AGCT 2 cut(s) 761, 1093
AluI AGCT 2 cut(s) 761, 1093
Alw21I GWGCWC 1 cut(s) 211
Alw26I GTCTC 4 cut(s) 9, 231, 486, 548
Alw44I GTGCAC 1 cut(s) 207
AlwI GGATC 3 cut(s) 406, 563, 576
AlwNI CAGNNNCTG 1 cut(s) 644
AoxI GGCC 4 cut(s) 325, 784, 810, 993
ApaI GGGCCC 1 cut(s) 997
ApaLI GTGCAC 1 cut(s) 207
ApeKI GCWGC 1 cut(s) 591
ApoI RAATTY 3 cut(s) 100, 842, 1035
ArsI GACNNNNNNTTYG 2 cut(s) 502, 534
Asp700I GAANNNNTTC 1 cut(s) 762
AspLEI GCGC 1 cut(s) 177
AspS9I GGNCC 4 cut(s) 326, 641, 993, 994
AsuC2I CCSGG 1 cut(s) 618
AsuHPI GGTGA 1 cut(s) 434
AvaII GGWCC 1 cut(s) 641
AxyI CCTNAGG 1 cut(s) 279
BaeGI GKGCMC 3 cut(s) 124, 211, 997
BalI TGGCCA 1 cut(s) 812
BamHI GGATCC 1 cut(s) 568
BanI GGYRCC 1 cut(s) 121
BanII GRGCYC 4 cut(s) 337, 448, 997, 1017
BbsI GAAGAC 2 cut(s) 73, 678
Bbv12I GWGCWC 1 cut(s) 211
BbvI GCAGC 1 cut(s) 603
BccI CCATC 2 cut(s) 497, 980
BciT130I CCWGG 4 cut(s) 339, 420, 441, 1032
BclI TGATCA 1 cut(s) 364
BcnI CCSGG 1 cut(s) 618
BcoDI GTCTC 4 cut(s) 9, 231, 486, 548
BcuI ACTAGT 1 cut(s) 515
BfaI CTAG 1 cut(s) 516
BfmI CTRYAG 1 cut(s) 249
BglII AGATCT 2 cut(s) 74, 969
BisI GCNGC 2 cut(s) 161, 592
BlsI GCNGC 2 cut(s) 162, 593
Bme1390I CCNGG 5 cut(s) 339, 420, 441, 618, 1032
Bme18I GGWCC 1 cut(s) 641
BmgT120I GGNCC 4 cut(s) 326, 641, 993, 994
BmiI GGNNCC 7 cut(s) 123, 285, 336, 447, 570, 994, 995
BmrFI CCNGG 5 cut(s) 339, 420, 441, 618, 1032
BmrI ACTGGG 1 cut(s) 397
BmsI GCATC 2 cut(s) 485, 1017
BmuI ACTGGG 1 cut(s) 397
BpiI GAAGAC 2 cut(s) 73, 678
BplI GAGNNNNNCTC 2 cut(s) 557, 589
BpmI CTGGAG 1 cut(s) 360
BpuEI CTTGAG 2 cut(s) 842, 1001
BpuMI CCSGG 1 cut(s) 618
BsaJI CCNNGG 3 cut(s) 329, 440, 802
Bsc4I CCNNNNNNNGG 5 cut(s) 315, 557, 731, 808, 1053
Bse1I ACTGG 4 cut(s) 125, 392, 712, 718
Bse21I CCTNAGG 1 cut(s) 279
Bse3DI GCAATG 1 cut(s) 1124
BseBI CCWGG 4 cut(s) 339, 420, 441, 1032
BseDI CCNNGG 3 cut(s) 329, 440, 802
BseGI GGATG 1 cut(s) 991
BseLI CCNNNNNNNGG 5 cut(s) 315, 557, 731, 808, 1053
BseMI GCAATG 1 cut(s) 1124
BseMII CTCAG 2 cut(s) 35, 82
BseNI ACTGG 4 cut(s) 125, 392, 712, 718
BseRI GAGGAG 3 cut(s) 818, 936, 1100
BseSI GKGCMC 3 cut(s) 124, 211, 997
BseXI GCAGC 1 cut(s) 603
BshFI GGCC 4 cut(s) 327, 786, 812, 995
BshNI GGYRCC 1 cut(s) 121
BsiHKAI GWGCWC 1 cut(s) 211
BsiSI CCGG 1 cut(s) 618
BslI CCNNNNNNNGG 5 cut(s) 315, 557, 731, 808, 1053
BsmAI GTCTC 4 cut(s) 9, 231, 486, 548
BsnI GGCC 4 cut(s) 327, 786, 812, 995
Bsp120I GGGCCC 1 cut(s) 993
Bsp1286I GDGCHC 6 cut(s) 124, 211, 337, 448, 997, 1017
Bsp143I GATC 7 cut(s) 74, 364, 411, 568, 633, 654, 969
BspACI CCGC 3 cut(s) 160, 294, 847
BspANI GGCC 4 cut(s) 327, 786, 812, 995
BspCNI CTCAG 2 cut(s) 34, 81
BspLI GGNNCC 7 cut(s) 123, 285, 336, 447, 570, 994, 995
BspPI GGATC 3 cut(s) 406, 563, 576
BspT107I GGYRCC 1 cut(s) 121
BsrDI GCAATG 1 cut(s) 1124
BsrI ACTGG 4 cut(s) 125, 392, 712, 718
BssECI CCNNGG 3 cut(s) 329, 440, 802
BssMI GATC 7 cut(s) 74, 364, 411, 568, 633, 654, 969
BssT1I CCWWGG 2 cut(s) 329, 802
Bst2UI CCWGG 4 cut(s) 339, 420, 441, 1032
Bst4CI ACNGT 2 cut(s) 43, 962
Bst6I CTCTTC 1 cut(s) 1046
BstAPI GCANNNNNTGC 1 cut(s) 183
BstC8I GCNNGC 1 cut(s) 649
BstDEI CTNAG 4 cut(s) 21, 68, 279, 896
BstEII GGTNACC 1 cut(s) 734
BstENI CCTNNNNNAGG 1 cut(s) 1051
BstF5I GGATG 1 cut(s) 991
BstHHI GCGC 1 cut(s) 177
BstKTI GATC 7 cut(s) 77, 367, 414, 571, 636, 657, 972
BstMAI GTCTC 4 cut(s) 9, 231, 486, 548
BstMBI GATC 7 cut(s) 74, 364, 411, 568, 633, 654, 969
BstMWI GCNNNNNNNGC 1 cut(s) 183
BstNI CCWGG 4 cut(s) 339, 420, 441, 1032
BstNSI RCATGY 2 cut(s) 190, 1127
BstPI GGTNACC 1 cut(s) 734
BstSCI CCNGG 5 cut(s) 337, 418, 439, 616, 1030
BstSFI CTRYAG 1 cut(s) 249
BstSLI GKGCMC 3 cut(s) 124, 211, 997
BstV1I GCAGC 1 cut(s) 603
BstV2I GAAGAC 2 cut(s) 73, 678
BstX2I RGATCY 3 cut(s) 74, 568, 969
BstYI RGATCY 3 cut(s) 74, 568, 969
Bsu36I CCTNAGG 1 cut(s) 279
BsuRI GGCC 4 cut(s) 327, 786, 812, 995
BtsCI GGATG 1 cut(s) 991
BtsIMutI CAGTG 4 cut(s) 198, 705, 711, 967
Cac8I GCNNGC 1 cut(s) 649
CaiI CAGNNNCTG 1 cut(s) 644
CfoI GCGC 1 cut(s) 177
Cfr13I GGNCC 4 cut(s) 326, 641, 993, 994
CspCI CAANNNNNGTGG 2 cut(s) 763, 798
CviAII CATG 7 cut(s) 117, 187, 368, 658, 754, 792, 1124
DdeI CTNAG 4 cut(s) 21, 68, 279, 896
DpnI GATC 7 cut(s) 76, 366, 413, 570, 635, 656, 971
DpnII GATC 7 cut(s) 74, 364, 411, 568, 633, 654, 969
DraI TTTAAA 1 cut(s) 976
DraIII CACNNNGTG 1 cut(s) 95
EaeI YGGCCR 1 cut(s) 810
Eam1104I CTCTTC 1 cut(s) 1046
EarI CTCTTC 1 cut(s) 1046
Eco130I CCWWGG 2 cut(s) 329, 802
Eco24I GRGCYC 4 cut(s) 337, 448, 997, 1017
Eco47I GGWCC 1 cut(s) 641
Eco57I CTGAAG 2 cut(s) 690, 1124
Eco81I CCTNAGG 1 cut(s) 279
Eco91I GGTNACC 1 cut(s) 734
EcoNI CCTNNNNNAGG 1 cut(s) 1051
EcoO109I RGGNCCY 2 cut(s) 641, 993
EcoO65I GGTNACC 1 cut(s) 734
EcoRI GAATTC 2 cut(s) 842, 1035
EcoRII CCWGG 4 cut(s) 337, 418, 439, 1030
EcoT14I CCWWGG 2 cut(s) 329, 802
EcoT22I ATGCAT 1 cut(s) 188
EcoT38I GRGCYC 4 cut(s) 337, 448, 997, 1017
ErhI CCWWGG 2 cut(s) 329, 802
FaeI CATG 7 cut(s) 120, 190, 371, 661, 757, 795, 1127
FatI CATG 7 cut(s) 116, 186, 367, 657, 753, 791, 1123
FbaI TGATCA 1 cut(s) 364
Fnu4HI GCNGC 2 cut(s) 161, 592
FokI GGATG 1 cut(s) 998
FriOI GRGCYC 4 cut(s) 337, 448, 997, 1017
Fsp4HI GCNGC 2 cut(s) 161, 592
FspBI CTAG 1 cut(s) 516
GlaI GCGC 1 cut(s) 176
GluI GCNGC 2 cut(s) 161, 592
GsuI CTGGAG 1 cut(s) 360
HaeIII GGCC 4 cut(s) 327, 786, 812, 995
HapII CCGG 1 cut(s) 618
HhaI GCGC 1 cut(s) 177
Hin1II CATG 7 cut(s) 120, 190, 371, 661, 757, 795, 1127
Hin6I GCGC 1 cut(s) 175
HinP1I GCGC 1 cut(s) 175
HindIII AAGCTT 1 cut(s) 1091
HpaII CCGG 1 cut(s) 618
HphI GGTGA 1 cut(s) 434
Hpy166II GTNNAC 2 cut(s) 209, 1135
Hpy188I TCNGA 2 cut(s) 71, 881
Hpy188III TCNNGA 2 cut(s) 941, 1040
Hpy8I GTNNAC 2 cut(s) 209, 1135
Hpy99I CGWCG 2 cut(s) 534, 747
HpyAV CCTTC 3 cut(s) 386, 556, 749
HpyCH4III ACNGT 2 cut(s) 43, 962
HpyCH4V TGCA 8 cut(s) 186, 196, 209, 476, 591, 606, 791, 1061
HpyF10VI GCNNNNNNNGC 1 cut(s) 183
HpyF3I CTNAG 4 cut(s) 21, 68, 279, 896
Hsp92II CATG 7 cut(s) 120, 190, 371, 661, 757, 795, 1127
HspAI GCGC 1 cut(s) 175
Ksp22I TGATCA 1 cut(s) 364
Kzo9I GATC 7 cut(s) 74, 364, 411, 568, 633, 654, 969
LmnI GCTCC 4 cut(s) 340, 451, 666, 727
Lsp1109I GCAGC 1 cut(s) 603
LweI GCATC 2 cut(s) 485, 1017
MaeI CTAG 1 cut(s) 516
MaeIII GTNAC 2 cut(s) 56, 734
MalI GATC 7 cut(s) 76, 366, 413, 570, 635, 656, 971
MboI GATC 7 cut(s) 74, 364, 411, 568, 633, 654, 969
MboII GAAGA 9 cut(s) 73, 84, 683, 851, 965, 1063, 1076, 1117, 1120
MfeI CAATTG 1 cut(s) 471
MflI RGATCY 3 cut(s) 74, 568, 969
MhlI GDGCHC 6 cut(s) 124, 211, 337, 448, 997, 1017
MlsI TGGCCA 1 cut(s) 812
MluCI AATT 7 cut(s) 100, 471, 627, 842, 874, 948, 1035
MluNI TGGCCA 1 cut(s) 812
Mox20I TGGCCA 1 cut(s) 812
Mph1103I ATGCAT 1 cut(s) 188
MroXI GAANNNNTTC 1 cut(s) 762
MscI TGGCCA 1 cut(s) 812
MseI TTAA 2 cut(s) 630, 975
MslI CAYNNNNRTG 1 cut(s) 191
Msp20I TGGCCA 1 cut(s) 812
MspI CCGG 1 cut(s) 618
MspR9I CCNGG 5 cut(s) 339, 420, 441, 618, 1032
MunI CAATTG 1 cut(s) 471
MvaI CCWGG 4 cut(s) 339, 420, 441, 1032
MwoI GCNNNNNNNGC 1 cut(s) 183
NciI CCSGG 1 cut(s) 618
NdeII GATC 7 cut(s) 74, 364, 411, 568, 633, 654, 969
NlaIII CATG 7 cut(s) 120, 190, 371, 661, 757, 795, 1127
NlaIV GGNNCC 7 cut(s) 123, 285, 336, 447, 570, 994, 995
NmuCI GTSAC 1 cut(s) 56
NsiI ATGCAT 1 cut(s) 188
NspI RCATGY 2 cut(s) 190, 1127
PdmI GAANNNNTTC 1 cut(s) 762
PfoI TCCNGGA 1 cut(s) 337
PkrI GCNGC 2 cut(s) 162, 593
PpuMI RGGWCCY 1 cut(s) 641
Psp5II RGGWCCY 1 cut(s) 641
Psp6I CCWGG 4 cut(s) 337, 418, 439, 1030
PspEI GGTNACC 1 cut(s) 734
PspGI CCWGG 4 cut(s) 337, 418, 439, 1030
PspN4I GGNNCC 7 cut(s) 123, 285, 336, 447, 570, 994, 995
PspOMI GGGCCC 1 cut(s) 993
PspPI GGNCC 4 cut(s) 326, 641, 993, 994
PspPPI RGGWCCY 1 cut(s) 641
PstNI CAGNNNCTG 1 cut(s) 644
PsuI RGATCY 3 cut(s) 74, 568, 969
RseI CAYNNNNRTG 1 cut(s) 191
SaqAI TTAA 2 cut(s) 630, 975
SatI GCNGC 2 cut(s) 161, 592
Sau3AI GATC 7 cut(s) 74, 364, 411, 568, 633, 654, 969
Sau96I GGNCC 4 cut(s) 326, 641, 993, 994
ScrFI CCNGG 5 cut(s) 339, 420, 441, 618, 1032
SduI GDGCHC 6 cut(s) 124, 211, 337, 448, 997, 1017
SfaNI GCATC 2 cut(s) 485, 1017
SfcI CTRYAG 1 cut(s) 249
SinI GGWCC 1 cut(s) 641
SmiMI CAYNNNNRTG 1 cut(s) 191
SmlI CTYRAG 2 cut(s) 857, 1016
SmoI CTYRAG 2 cut(s) 857, 1016
SpeI ACTAGT 1 cut(s) 515
Sse9I AATT 7 cut(s) 100, 471, 627, 842, 874, 948, 1035
SsiI CCGC 3 cut(s) 160, 294, 847
SspMI CTAG 1 cut(s) 516
StyD4I CCNGG 5 cut(s) 337, 418, 439, 616, 1030
StyI CCWWGG 2 cut(s) 329, 802
TaaI ACNGT 2 cut(s) 43, 962
TaqI TCGA 2 cut(s) 479, 501
TasI AATT 7 cut(s) 100, 471, 627, 842, 874, 948, 1035
TauI GCSGC 1 cut(s) 163
Tru1I TTAA 2 cut(s) 630, 975
Tru9I TTAA 2 cut(s) 630, 975
TscAI CASTG 4 cut(s) 198, 712, 718, 967
TseFI GTSAC 1 cut(s) 56
TseI GCWGC 1 cut(s) 591
Tsp45I GTSAC 1 cut(s) 56
TspDTI ATGAA 2 cut(s) 742, 852
TspGWI ACGGA 3 cut(s) 298, 449, 518
TspRI CASTG 4 cut(s) 198, 712, 718, 967
VneI GTGCAC 1 cut(s) 207
VpaK11BI GGWCC 1 cut(s) 641
XagI CCTNNNNNAGG 1 cut(s) 1051
XapI RAATTY 3 cut(s) 100, 842, 1035
XceI RCATGY 2 cut(s) 190, 1127
XmnI GAANNNNTTC 1 cut(s) 762
XspI CTAG 1 cut(s) 516
Zsp2I ATGCAT 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.