Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012024

Physical Location & Seq

Genomic Coordinates Reverse (-)

10858232 .. 10860322

Gene Structure 2091 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G30630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGCATCCATGGCAGGACCAGATCATCTCTTCAATTTGAGAAACCATTTCTACTTGGGTGCTTATCAAGCTGCGATCAACAACAGCGAGATCCCTAATCTTTCGCAGGAAGATATCGTCGAGCGAGACTGTCTCGTCCATCGCGCTTACATCGCTCTCGGAAGTTACCAGCTTGTCATCAGTGAGATCGATGAAGCCGCTGCTACTCCTCTACAGGCAGTGAAACTCCTTGCTATGTATCTATCGAGTCCTGAAAACAAGGAATCAACCATTTCGAGCTTGAGGGAATGGTTGGCAGATCCAACTGTAGGAAACAATGCTATTATCAGGTTGATTGCTGGTACTATATTCATGCATGAGGAAGACTATAATGAGGCTCTGAAGCACACTCATTCTGGAGGAACCATGGATCTGCATGCTTTGAATGTCCAGATATTCATAAAGATGCACAGATCAGATTTTGCGGAGAAACAACTGAGAGTGATGCAACAGATTGATGAAGACCACACACTCACTCAGCTCGCGAGCGCGTGGTTGAATCTGGCAGTAGGTGGTTCCAAGATACAGGAAGCTTATCTAATCTTCCAGGATTTCTCTGAGAAGTACCCAATGACAAGCTTGATCTTGAACGGCAAAGCAGTTTGCTGCATGCATATGGGTAATTTTGAAGAAGCTGAGACTCTACTACTTGAAGCACTCAACAAGGATGCTAAAGACCCAGAAACTCTTGCAAACCTCGTTGTATGCAGTCTTCACGTCGGGAAATCATCTTCTCGCTACCTAAACCAGCTGAAACTTTCACATCCAGAACACGTCCTTGTGAAGCGAGCAGCATCAGCTGAAGATAACTTCGAGAGAGCACTTCAATCTTTCGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005798 GO:0005829 GO:0006810 GO:0006888 GO:0006890 GO:0006891 GO:0008150 GO:0012505 GO:0012506 GO:0016020 GO:0016192 GO:0030117 GO:0030120 GO:0030126 GO:0030135 GO:0030137 GO:0030659 GO:0030660 GO:0030662 GO:0030663 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Coatomer_E

Protein Analysis

292

Amino Acids

32.6

Weight (kDa)

5.33

Isoelectric Point (pI)

43.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Coatomer_E	PF04733	7 - 291	7.4e-138	Coatomer epsilon subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30630 AT2G34840 AT2G34840
fragaria_vesca	FvH4_3g11400 FvH4_3g11400
malus_domestica	MD05G1263700.v1.1 MD10G1241400.v1.1
prunus_persica	Prupe.4G101800_v2.0.a1
pyrus_communis	pycom05g24770 pycom10g20240
rosa_chinensis	RchiOBHm_Chr5g0018341
rosa_laevigata	RLG00000032353
rosa_multiflora	Rmu_sc0004464.1_g000001
rosa_roxburghii	Rroxscaffold_1G00059400
rosa_rugosa	Rorug05G0041600
rosa_samantha	Rh5BG133500 Rh5CG145300 Rh5DG134900
rosa_wichuraiana	Rw5G011780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	134
AccII	CGCG	3 cut(s)	144, 524, 530
AciI	CCGC	2 cut(s)	198, 464
AclWI	GGATC	3 cut(s)	85, 293, 417
AcuI	CTGAAG	2 cut(s)	401, 861
AfaI	GTAC	2 cut(s)	343, 605
AfiI	CCNNNNNNNGG	1 cut(s)	308
AflIII	ACRYGT	1 cut(s)	811
AgsI	TTSAA	7 cut(s)	34, 424, 538, 628, 668, 692, 866
AjiI	CACGTC	2 cut(s)	757, 814
AjnI	CCWGG	1 cut(s)	585
AluBI	AGCT	9 cut(s)	71, 172, 279, 520, 572, 618, 674, 790, 839
AluI	AGCT	9 cut(s)	71, 172, 279, 520, 572, 618, 674, 790, 839
Alw21I	GWGCWC	1 cut(s)	862
Alw26I	GTCTC	3 cut(s)	120, 137, 671
AlwI	GGATC	3 cut(s)	85, 293, 417
ApeKI	GCWGC	4 cut(s)	71, 200, 645, 830
AspLEI	GCGC	2 cut(s)	146, 530
AspS9I	GGNCC	1 cut(s)	17
AvaII	GGWCC	1 cut(s)	17
BarI	GAAGNNNNNNTAC	2 cut(s)	735, 767
BbsI	GAAGAC	3 cut(s)	369, 507, 743
Bbv12I	GWGCWC	1 cut(s)	862
BbvI	GCAGC	4 cut(s)	58, 187, 632, 842
BccI	CCATC	1 cut(s)	147
BceAI	ACGGC	1 cut(s)	646
BciT130I	CCWGG	1 cut(s)	587
BcoDI	GTCTC	3 cut(s)	120, 137, 671
BfmI	CTRYAG	2 cut(s)	212, 306
BisI	GCNGC	5 cut(s)	72, 198, 201, 646, 831
BlsI	GCNGC	5 cut(s)	73, 199, 202, 647, 832
Bme1390I	CCNGG	1 cut(s)	587
Bme18I	GGWCC	1 cut(s)	17
BmgBI	CACGTC	2 cut(s)	757, 814
BmgT120I	GGNCC	1 cut(s)	17
BmiI	GGNNCC	2 cut(s)	403, 556
BmrFI	CCNGG	1 cut(s)	587
BmsI	GCATC	5 cut(s)	14, 435, 474, 697, 842
BpiI	GAAGAC	3 cut(s)	369, 507, 743
BplI	GAGNNNNNCTC	2 cut(s)	117, 149
BpmI	CTGGAG	1 cut(s)	417
BpuEI	CTTGAG	1 cut(s)	301
Bsa29I	ATCGAT	1 cut(s)	189
BsaJI	CCNNGG	2 cut(s)	9, 405
Bsc4I	CCNNNNNNNGG	1 cut(s)	308
BseBI	CCWGG	1 cut(s)	587
BseCI	ATCGAT	1 cut(s)	189
BseDI	CCNNGG	2 cut(s)	9, 405
BseGI	GGATG	3 cut(s)	5, 712, 802
BseLI	CCNNNNNNNGG	1 cut(s)	308
BseMII	CTCAG	4 cut(s)	467, 530, 588, 666
BseRI	GAGGAG	1 cut(s)	198
BseXI	GCAGC	4 cut(s)	58, 187, 632, 842
Bsh1236I	CGCG	3 cut(s)	144, 524, 530
BshVI	ATCGAT	1 cut(s)	189
BsiHKAI	GWGCWC	1 cut(s)	862
BslI	CCNNNNNNNGG	1 cut(s)	308
BsmAI	GTCTC	3 cut(s)	120, 137, 671
Bsp1286I	GDGCHC	1 cut(s)	862
Bsp143I	GATC	8 cut(s)	22, 75, 90, 186, 298, 409, 452, 621
Bsp19I	CCATGG	2 cut(s)	9, 405
Bsp68I	TCGCGA	1 cut(s)	524
BspACI	CCGC	2 cut(s)	198, 464
BspCNI	CTCAG	4 cut(s)	468, 529, 589, 667
BspDI	ATCGAT	1 cut(s)	189
BspFNI	CGCG	3 cut(s)	144, 524, 530
BspLI	GGNNCC	2 cut(s)	403, 556
BspPI	GGATC	3 cut(s)	85, 293, 417
BssECI	CCNNGG	2 cut(s)	9, 405
BssMI	GATC	8 cut(s)	22, 75, 90, 186, 298, 409, 452, 621
BssT1I	CCWWGG	2 cut(s)	9, 405
Bst2UI	CCWGG	1 cut(s)	587
Bst4CI	ACNGT	2 cut(s)	131, 307
Bst6I	CTCTTC	1 cut(s)	35
BstC8I	GCNNGC	5 cut(s)	417, 522, 526, 650, 828
BstDEI	CTNAG	4 cut(s)	476, 516, 597, 675
BstDSI	CCRYGG	2 cut(s)	9, 405
BstF5I	GGATG	3 cut(s)	5, 712, 802
BstFNI	CGCG	3 cut(s)	144, 524, 530
BstHHI	GCGC	2 cut(s)	146, 530
BstKTI	GATC	8 cut(s)	25, 78, 93, 189, 301, 412, 455, 624
BstMAI	GTCTC	3 cut(s)	120, 137, 671
BstMBI	GATC	8 cut(s)	22, 75, 90, 186, 298, 409, 452, 621
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 68, 152, 836
BstNI	CCWGG	1 cut(s)	587
BstNSI	RCATGY	2 cut(s)	419, 652
BstSCI	CCNGG	1 cut(s)	585
BstSFI	CTRYAG	2 cut(s)	212, 306
BstUI	CGCG	3 cut(s)	144, 524, 530
BstV1I	GCAGC	4 cut(s)	58, 187, 632, 842
BstV2I	GAAGAC	3 cut(s)	369, 507, 743
BstX2I	RGATCY	3 cut(s)	90, 298, 409
BstYI	RGATCY	3 cut(s)	90, 298, 409
Bsu15I	ATCGAT	1 cut(s)	189
BsuTUI	ATCGAT	1 cut(s)	189
BtgI	CCRYGG	2 cut(s)	9, 405
BtgZI	GCGATG	2 cut(s)	125, 136
BtrI	CACGTC	2 cut(s)	757, 814
BtsCI	GGATG	3 cut(s)	5, 712, 802
BtsI	GCAGTG	1 cut(s)	225
BtsIMutI	CAGTG	2 cut(s)	187, 225
BtuMI	TCGCGA	1 cut(s)	524
Cac8I	GCNNGC	5 cut(s)	417, 522, 526, 650, 828
CfoI	GCGC	2 cut(s)	146, 530
Cfr13I	GGNCC	1 cut(s)	17
ClaI	ATCGAT	1 cut(s)	189
Csp6I	GTAC	2 cut(s)	342, 604
CviAII	CATG	6 cut(s)	10, 352, 356, 406, 416, 649
CviQI	GTAC	2 cut(s)	342, 604
DdeI	CTNAG	4 cut(s)	476, 516, 597, 675
DpnI	GATC	8 cut(s)	24, 77, 92, 188, 300, 411, 454, 623
DpnII	GATC	8 cut(s)	22, 75, 90, 186, 298, 409, 452, 621
DrdI	GACNNNNNNGTC	1 cut(s)	134
DseDI	GACNNNNNNGTC	1 cut(s)	134
Eam1104I	CTCTTC	1 cut(s)	35
EarI	CTCTTC	1 cut(s)	35
Eco130I	CCWWGG	2 cut(s)	9, 405
Eco32I	GATATC	1 cut(s)	115
Eco47I	GGWCC	1 cut(s)	17
Eco57I	CTGAAG	2 cut(s)	401, 861
EcoRII	CCWGG	1 cut(s)	585
EcoRV	GATATC	1 cut(s)	115
EcoT14I	CCWWGG	2 cut(s)	9, 405
EcoT22I	ATGCAT	2 cut(s)	357, 654
ErhI	CCWWGG	2 cut(s)	9, 405
FaeI	CATG	6 cut(s)	13, 355, 359, 409, 419, 652
FatI	CATG	6 cut(s)	9, 351, 355, 405, 415, 648
FauNDI	CATATG	1 cut(s)	654
Fnu4HI	GCNGC	5 cut(s)	72, 198, 201, 646, 831
FokI	GGATG	2 cut(s)	719, 789
Fsp4HI	GCNGC	5 cut(s)	72, 198, 201, 646, 831
GlaI	GCGC	2 cut(s)	145, 529
GluI	GCNGC	5 cut(s)	72, 198, 201, 646, 831
GsuI	CTGGAG	1 cut(s)	417
HhaI	GCGC	2 cut(s)	146, 530
Hin1II	CATG	6 cut(s)	13, 355, 359, 409, 419, 652
Hin6I	GCGC	2 cut(s)	144, 528
HinP1I	GCGC	2 cut(s)	144, 528
HindIII	AAGCTT	2 cut(s)	570, 616
HinfI	GANTC	4 cut(s)	247, 263, 538, 679
Hpy188I	TCNGA	4 cut(s)	161, 381, 457, 598
Hpy188III	TCNNGA	8 cut(s)	251, 396, 430, 523, 625, 760, 806, 853
Hpy99I	CGWCG	2 cut(s)	122, 761
HpyCH4III	ACNGT	2 cut(s)	131, 307
HpyCH4IV	ACGT	2 cut(s)	756, 813
HpyCH4V	TGCA	8 cut(s)	355, 415, 448, 487, 648, 652, 731, 747
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 68, 152, 836
HpyF3I	CTNAG	4 cut(s)	476, 516, 597, 675
HpySE526I	ACGT	2 cut(s)	756, 813
Hsp92II	CATG	6 cut(s)	13, 355, 359, 409, 419, 652
HspAI	GCGC	2 cut(s)	144, 528
Kzo9I	GATC	8 cut(s)	22, 75, 90, 186, 298, 409, 452, 621
Lsp1109I	GCAGC	4 cut(s)	58, 187, 632, 842
LweI	GCATC	5 cut(s)	14, 435, 474, 697, 842
MaeII	ACGT	2 cut(s)	756, 813
MaeIII	GTNAC	1 cut(s)	164
MalI	GATC	8 cut(s)	24, 77, 92, 188, 300, 411, 454, 623
MboI	GATC	8 cut(s)	22, 75, 90, 186, 298, 409, 452, 621
MboII	GAAGA	9 cut(s)	22, 122, 374, 512, 574, 680, 743, 762, 854
MflI	RGATCY	3 cut(s)	90, 298, 409
MhlI	GDGCHC	1 cut(s)	862
MluCI	AATT	2 cut(s)	34, 661
MlyI	GAGTC	2 cut(s)	256, 673
MmeI	TCCRAC	1 cut(s)	326
MnlI	CCTC	6 cut(s)	219, 276, 352, 367, 392, 746
Mph1103I	ATGCAT	2 cut(s)	357, 654
MslI	CAYNNNNRTG	2 cut(s)	443, 653
MspA1I	CMGCKG	3 cut(s)	200, 790, 839
MspR9I	CCNGG	1 cut(s)	587
MvaI	CCWGG	1 cut(s)	587
MvnI	CGCG	3 cut(s)	144, 524, 530
MwoI	GCNNNNNNNGC	4 cut(s)	11, 68, 152, 836
NcoI	CCATGG	2 cut(s)	9, 405
NdeI	CATATG	1 cut(s)	654
NdeII	GATC	8 cut(s)	22, 75, 90, 186, 298, 409, 452, 621
NlaIII	CATG	6 cut(s)	13, 355, 359, 409, 419, 652
NlaIV	GGNNCC	2 cut(s)	403, 556
NruI	TCGCGA	1 cut(s)	524
NsiI	ATGCAT	2 cut(s)	357, 654
NspI	RCATGY	2 cut(s)	419, 652
PaeI	GCATGC	2 cut(s)	419, 652
PfeI	GAWTC	2 cut(s)	263, 538
PfoI	TCCNGGA	1 cut(s)	585
PkrI	GCNGC	5 cut(s)	73, 199, 202, 647, 832
PleI	GAGTC	2 cut(s)	255, 673
PpsI	GAGTC	2 cut(s)	255, 673
Psp6I	CCWGG	1 cut(s)	585
PspGI	CCWGG	1 cut(s)	585
PspN4I	GGNNCC	2 cut(s)	403, 556
PspPI	GGNCC	1 cut(s)	17
PsuI	RGATCY	3 cut(s)	90, 298, 409
PvuII	CAGCTG	2 cut(s)	790, 839
RruI	TCGCGA	1 cut(s)	524
RsaI	GTAC	2 cut(s)	343, 605
RsaNI	GTAC	2 cut(s)	342, 604
RseI	CAYNNNNRTG	2 cut(s)	443, 653
SatI	GCNGC	5 cut(s)	72, 198, 201, 646, 831
Sau3AI	GATC	8 cut(s)	22, 75, 90, 186, 298, 409, 452, 621
Sau96I	GGNCC	1 cut(s)	17
SchI	GAGTC	2 cut(s)	256, 673
ScrFI	CCNGG	1 cut(s)	587
SduI	GDGCHC	1 cut(s)	862
SfaNI	GCATC	5 cut(s)	14, 435, 474, 697, 842
SfcI	CTRYAG	2 cut(s)	212, 306
SinI	GGWCC	1 cut(s)	17
SmiMI	CAYNNNNRTG	2 cut(s)	443, 653
SmlI	CTYRAG	1 cut(s)	280
SmoI	CTYRAG	1 cut(s)	280
SphI	GCATGC	2 cut(s)	419, 652
Sse9I	AATT	2 cut(s)	34, 661
SsiI	CCGC	2 cut(s)	198, 464
StyD4I	CCNGG	1 cut(s)	585
StyI	CCWWGG	2 cut(s)	9, 405
TaaI	ACNGT	2 cut(s)	131, 307
TaiI	ACGT	2 cut(s)	759, 816
TaqI	TCGA	5 cut(s)	120, 189, 245, 275, 852
TasI	AATT	2 cut(s)	34, 661
TauI	GCSGC	1 cut(s)	200
TfiI	GAWTC	2 cut(s)	263, 538
TscAI	CASTG	2 cut(s)	187, 225
TseI	GCWGC	4 cut(s)	71, 200, 645, 830
TspDTI	ATGAA	4 cut(s)	207, 340, 427, 513
TspRI	CASTG	2 cut(s)	187, 225
VpaK11BI	GGWCC	1 cut(s)	17
XceI	RCATGY	2 cut(s)	419, 652
Zsp2I	ATGCAT	2 cut(s)	357, 654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.