Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0012024

Physical Location & Seq

Genomic Coordinates Forward (+)

26281561 .. 26283803

Gene Structure 2243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g24770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGCAGCAGTGGCAGCTGGACCGGACCACCTCTTCAACCTCCGCAACAACTTCTACTTGGGCGCCTACCAGGCCGCCATTAACAACAGCGACCTCCCCAACCTCTCCCCCGACGACGCCGTCGAGCGCGACTGCCTCGTCTTCCGCTCTTACATCGCCCTCGGCAGCTACCAGCTCGTCATCAATGAGATCGACGCCTCCGCTGCCACGCCTCTCCAGGCCGTCAAGCTTCTCGCCCTCTACCTCTCCGGCCCCGATTTCAAGGAATCGACGATCTCAACTTTGAAGGAGTTGTTGGCGGATCCGGCCGTCGGAAACAACCCTACTCTGAGGCTGATTGCTGGGACGGTGTTCATGCATGAGCAGGACTACAATGAAGCTCTCAAATACACCAATTCCGGAGGCACTATGGAACTGAATGCATTGAATATCCAGATATTCCTTAAAATGCATAGGTCAGATTACGCGGAGAGACAGCTGCGGCTCATGCAACAGGTTGACGAGGACCACACACTAACCCAACTTGCAATGGCATGGTTAAATCTGGCAGTGGGTGGTTCCAAGATACAGGAGGCATATCTCATCTTCCAAGATTTCTCTGAGAAGTCTCAGGCTACGAGTTTGATCGATCTCAATGGAAAGGCTGTTTGCTGTATGCATATGGGAAACTTTGATGAAGCCGAAACACTACTTCTTGAAGCACTGCAAAAGGATGCAAAGGATCCAGAAACTCTAGCCAACCTTGTTGTATGCTGTCTTCACCTGGGAAAACCATCTTCTCGTTTCCTCAGCCAGTTGAAAATTGGGCACCCAAATCACTTGCTCGTCAAAAGGGCCGCGGAGGCAGAACAGAACATTAACCAGGCTCTTCAAGCAGTTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005798 GO:0005829 GO:0006810 GO:0006888 GO:0006890 GO:0006891 GO:0008150 GO:0012505 GO:0012506 GO:0016020 GO:0016192 GO:0030117 GO:0030120 GO:0030126 GO:0030135 GO:0030137 GO:0030659 GO:0030660 GO:0030662 GO:0030663 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Coatomer_E

Protein Analysis

295

Amino Acids

32.34

Weight (kDa)

5.06

Isoelectric Point (pI)

38.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Coatomer_E	PF04733	8 - 292	1.1e-126	Coatomer epsilon subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30630 AT2G34840 AT2G34840
fragaria_vesca	FvH4_3g11400 FvH4_3g11400
malus_domestica	MD05G1263700.v1.1 MD10G1241400.v1.1
prunus_persica	Prupe.4G101800_v2.0.a1
pyrus_communis	pycom05g24770 pycom10g20240
rosa_chinensis	RchiOBHm_Chr5g0018341
rosa_laevigata	RLG00000032353
rosa_multiflora	Rmu_sc0004464.1_g000001
rosa_roxburghii	Rroxscaffold_1G00059400
rosa_rugosa	Rorug05G0041600
rosa_samantha	Rh5BG133500 Rh5CG145300 Rh5DG134900
rosa_wichuraiana	Rw5G011780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	119, 137
AccB1I	GGYRCC	2 cut(s)	62, 807
AccBSI	CCGCTC	1 cut(s)	147
AccII	CGCG	3 cut(s)	129, 467, 839
AccIII	TCCGGA	1 cut(s)	398
AciI	CCGC	9 cut(s)	43, 75, 145, 201, 299, 467, 481, 837, 839
AclWI	GGATC	4 cut(s)	296, 309, 716, 729
AcoI	YGGCCR	1 cut(s)	306
AcyI	GRCGYC	3 cut(s)	63, 117, 195
AfiI	CCNNNNNNNGG	1 cut(s)	311
AgsI	TTSAA	7 cut(s)	37, 262, 286, 427, 698, 799, 872
AjnI	CCWGG	4 cut(s)	69, 216, 762, 861
AjuI	GAANNNNNNNTTGG	2 cut(s)	278, 310
AluBI	AGCT	6 cut(s)	17, 168, 175, 229, 380, 478
AluI	AGCT	6 cut(s)	17, 168, 175, 229, 380, 478
Alw26I	GTCTC	2 cut(s)	466, 612
AlwI	GGATC	4 cut(s)	296, 309, 716, 729
Aor13HI	TCCGGA	1 cut(s)	398
AoxI	GGCC	5 cut(s)	72, 219, 250, 306, 834
ApeKI	GCWGC	5 cut(s)	5, 14, 165, 203, 478
AspLEI	GCGC	2 cut(s)	65, 129
AspS9I	GGNCC	5 cut(s)	20, 25, 251, 505, 834
AsuHPI	GGTGA	1 cut(s)	752
AvaII	GGWCC	3 cut(s)	20, 25, 505
BaeGI	GKGCMC	1 cut(s)	810
BamHI	GGATCC	2 cut(s)	301, 721
BanI	GGYRCC	2 cut(s)	62, 807
BarI	GAAGNNNNNNTAC	2 cut(s)	741, 773
BbsI	GAAGAC	2 cut(s)	133, 749
BbvCI	CCTCAGC	1 cut(s)	788
BbvI	GCAGC	5 cut(s)	17, 26, 177, 190, 465
BccI	CCATC	1 cut(s)	781
BceAI	ACGGC	3 cut(s)	104, 206, 293
BciT130I	CCWGG	4 cut(s)	71, 218, 764, 863
BcoDI	GTCTC	2 cut(s)	466, 612
BfaI	CTAG	1 cut(s)	734
BfoI	RGCGCY	1 cut(s)	66
BglI	GCCNNNNNGGC	2 cut(s)	71, 842
BisI	GCNGC	8 cut(s)	6, 15, 75, 166, 204, 479, 482, 837
BlsI	GCNGC	8 cut(s)	7, 16, 76, 167, 205, 480, 483, 838
Bme1390I	CCNGG	4 cut(s)	71, 218, 764, 863
Bme18I	GGWCC	3 cut(s)	20, 25, 505
BmgT120I	GGNCC	5 cut(s)	20, 25, 251, 505, 834
BmiI	GGNNCC	6 cut(s)	64, 253, 303, 559, 723, 809
BmrFI	CCNGG	4 cut(s)	71, 218, 764, 863
BmsI	GCATC	1 cut(s)	703
BpiI	GAAGAC	2 cut(s)	133, 749
BpmI	CTGGAG	1 cut(s)	200
Bpu10I	CCTNAGC	1 cut(s)	788
Bsa29I	ATCGAT	1 cut(s)	627
BsaHI	GRCGYC	3 cut(s)	63, 117, 195
BsaJI	CCNNGG	3 cut(s)	160, 763, 837
BsaWI	WCCGGW	2 cut(s)	22, 398
Bsc4I	CCNNNNNNNGG	1 cut(s)	311
Bse1I	ACTGG	1 cut(s)	793
Bse3DI	GCAATG	1 cut(s)	534
BseAI	TCCGGA	1 cut(s)	398
BseBI	CCWGG	4 cut(s)	71, 218, 764, 863
BseCI	ATCGAT	1 cut(s)	627
BseDI	CCNNGG	3 cut(s)	160, 763, 837
BseGI	GGATG	1 cut(s)	718
BseLI	CCNNNNNNNGG	1 cut(s)	311
BseMI	GCAATG	1 cut(s)	534
BseMII	CTCAG	4 cut(s)	320, 591, 623, 802
BseNI	ACTGG	1 cut(s)	793
BseSI	GKGCMC	1 cut(s)	810
BseX3I	CGGCCG	1 cut(s)	306
BseXI	GCAGC	5 cut(s)	17, 26, 177, 190, 465
BseYI	CCCAGC	1 cut(s)	341
Bsh1236I	CGCG	3 cut(s)	129, 467, 839
Bsh1285I	CGRYCG	1 cut(s)	309
BshFI	GGCC	5 cut(s)	74, 221, 252, 308, 836
BshNI	GGYRCC	2 cut(s)	62, 807
BshVI	ATCGAT	1 cut(s)	627
BsiEI	CGRYCG	1 cut(s)	309
BsiSI	CCGG	4 cut(s)	23, 249, 305, 399
BslFI	GGGAC	1 cut(s)	358
BslI	CCNNNNNNNGG	1 cut(s)	311
BsmAI	GTCTC	2 cut(s)	466, 612
BsmFI	GGGAC	1 cut(s)	358
BsmI	GAATGC	1 cut(s)	424
BsnI	GGCC	5 cut(s)	74, 221, 252, 308, 836
Bsp1286I	GDGCHC	1 cut(s)	810
Bsp13I	TCCGGA	1 cut(s)	398
Bsp143I	GATC	6 cut(s)	189, 273, 301, 624, 628, 721
BspACI	CCGC	9 cut(s)	43, 75, 145, 201, 299, 467, 481, 837, 839
BspANI	GGCC	5 cut(s)	74, 221, 252, 308, 836
BspCNI	CTCAG	4 cut(s)	321, 592, 622, 801
BspDI	ATCGAT	1 cut(s)	627
BspEI	TCCGGA	1 cut(s)	398
BspFNI	CGCG	3 cut(s)	129, 467, 839
BspLI	GGNNCC	6 cut(s)	64, 253, 303, 559, 723, 809
BspPI	GGATC	4 cut(s)	296, 309, 716, 729
BspQI	GCTCTTC	1 cut(s)	873
BspT107I	GGYRCC	2 cut(s)	62, 807
BsrBI	CCGCTC	1 cut(s)	147
BsrDI	GCAATG	1 cut(s)	534
BsrI	ACTGG	1 cut(s)	793
BssECI	CCNNGG	3 cut(s)	160, 763, 837
BssMI	GATC	6 cut(s)	189, 273, 301, 624, 628, 721
BssNI	GRCGYC	3 cut(s)	63, 117, 195
Bst2UI	CCWGG	4 cut(s)	71, 218, 764, 863
Bst4CI	ACNGT	1 cut(s)	349
Bst6I	CTCTTC	2 cut(s)	38, 873
BstACI	GRCGYC	3 cut(s)	63, 117, 195
BstDEI	CTNAG	4 cut(s)	329, 600, 609, 788
BstDSI	CCRYGG	1 cut(s)	837
BstF5I	GGATG	1 cut(s)	718
BstFNI	CGCG	3 cut(s)	129, 467, 839
BstH2I	RGCGCY	1 cut(s)	66
BstHHI	GCGC	2 cut(s)	65, 129
BstKTI	GATC	6 cut(s)	192, 276, 304, 627, 631, 724
BstMAI	GTCTC	2 cut(s)	466, 612
BstMBI	GATC	6 cut(s)	189, 273, 301, 624, 628, 721
BstMCI	CGRYCG	1 cut(s)	309
BstMWI	GCNNNNNNNGC	8 cut(s)	11, 14, 71, 203, 305, 487, 842, 872
BstNI	CCWGG	4 cut(s)	71, 218, 764, 863
BstSCI	CCNGG	4 cut(s)	69, 216, 762, 861
BstSLI	GKGCMC	1 cut(s)	810
BstUI	CGCG	3 cut(s)	129, 467, 839
BstV1I	GCAGC	5 cut(s)	17, 26, 177, 190, 465
BstV2I	GAAGAC	2 cut(s)	133, 749
BstX2I	RGATCY	2 cut(s)	301, 721
BstYI	RGATCY	2 cut(s)	301, 721
BstZI	CGGCCG	1 cut(s)	306
Bsu15I	ATCGAT	1 cut(s)	627
BsuRI	GGCC	5 cut(s)	74, 221, 252, 308, 836
BsuTUI	ATCGAT	1 cut(s)	627
BtgI	CCRYGG	1 cut(s)	837
BtgZI	GCGATG	1 cut(s)	139
BtsCI	GGATG	1 cut(s)	718
BtsI	GCAGTG	3 cut(s)	15, 555, 701
BtsIMutI	CAGTG	3 cut(s)	15, 555, 701
CfoI	GCGC	2 cut(s)	65, 129
Cfr13I	GGNCC	5 cut(s)	20, 25, 251, 505, 834
Cfr42I	CCGCGG	1 cut(s)	840
ClaI	ATCGAT	1 cut(s)	627
CseI	GACGC	2 cut(s)	125, 203
CviAII	CATG	4 cut(s)	355, 359, 487, 534
DdeI	CTNAG	4 cut(s)	329, 600, 609, 788
DinI	GGCGCC	1 cut(s)	64
DpnI	GATC	6 cut(s)	191, 275, 303, 626, 630, 723
DpnII	GATC	6 cut(s)	189, 273, 301, 624, 628, 721
DrdI	GACNNNNNNGTC	2 cut(s)	119, 137
DseDI	GACNNNNNNGTC	2 cut(s)	119, 137
EaeI	YGGCCR	1 cut(s)	306
EagI	CGGCCG	1 cut(s)	306
Eam1104I	CTCTTC	2 cut(s)	38, 873
EarI	CTCTTC	2 cut(s)	38, 873
EciI	GGCGGA	1 cut(s)	314
EclXI	CGGCCG	1 cut(s)	306
Eco47I	GGWCC	3 cut(s)	20, 25, 505
Eco52I	CGGCCG	1 cut(s)	306
EcoRII	CCWGG	4 cut(s)	69, 216, 762, 861
EcoT22I	ATGCAT	4 cut(s)	360, 424, 453, 660
EgeI	GGCGCC	1 cut(s)	64
EheI	GGCGCC	1 cut(s)	64
FaeI	CATG	4 cut(s)	358, 362, 490, 537
FaqI	GGGAC	1 cut(s)	358
FatI	CATG	4 cut(s)	354, 358, 486, 533
FauNDI	CATATG	1 cut(s)	660
Fnu4HI	GCNGC	8 cut(s)	6, 15, 75, 166, 204, 479, 482, 837
FokI	GGATG	1 cut(s)	725
Fsp4HI	GCNGC	8 cut(s)	6, 15, 75, 166, 204, 479, 482, 837
FspBI	CTAG	1 cut(s)	734
GlaI	GCGC	2 cut(s)	64, 128
GluI	GCNGC	8 cut(s)	6, 15, 75, 166, 204, 479, 482, 837
GsaI	CCCAGC	1 cut(s)	345
GsuI	CTGGAG	1 cut(s)	200
HaeII	RGCGCY	1 cut(s)	66
HaeIII	GGCC	5 cut(s)	74, 221, 252, 308, 836
HapII	CCGG	4 cut(s)	23, 249, 305, 399
HgaI	GACGC	2 cut(s)	125, 203
HhaI	GCGC	2 cut(s)	65, 129
Hin1I	GRCGYC	3 cut(s)	63, 117, 195
Hin1II	CATG	4 cut(s)	358, 362, 490, 537
Hin6I	GCGC	2 cut(s)	63, 127
HinP1I	GCGC	2 cut(s)	63, 127
HincII	GTYRAC	1 cut(s)	499
HindII	GTYRAC	1 cut(s)	499
HindIII	AAGCTT	1 cut(s)	227
HinfI	GANTC	1 cut(s)	266
HpaII	CCGG	4 cut(s)	23, 249, 305, 399
HphI	GGTGA	1 cut(s)	752
Hpy166II	GTNNAC	1 cut(s)	499
Hpy188I	TCNGA	4 cut(s)	314, 330, 460, 601
Hpy188III	TCNNGA	4 cut(s)	399, 433, 695, 725
Hpy8I	GTNNAC	1 cut(s)	499
Hpy99I	CGWCG	6 cut(s)	116, 119, 125, 197, 274, 314
HpyAV	CCTTC	1 cut(s)	280
HpyCH4III	ACNGT	1 cut(s)	349
HpyCH4V	TGCA	8 cut(s)	358, 422, 451, 490, 527, 658, 706, 716
HpyF10VI	GCNNNNNNNGC	8 cut(s)	11, 14, 71, 203, 305, 487, 842, 872
HpyF3I	CTNAG	4 cut(s)	329, 600, 609, 788
Hsp92I	GRCGYC	3 cut(s)	63, 117, 195
Hsp92II	CATG	4 cut(s)	358, 362, 490, 537
HspAI	GCGC	2 cut(s)	63, 127
KasI	GGCGCC	1 cut(s)	62
Kpn2I	TCCGGA	1 cut(s)	398
KspI	CCGCGG	1 cut(s)	840
Kzo9I	GATC	6 cut(s)	189, 273, 301, 624, 628, 721
LguI	GCTCTTC	1 cut(s)	873
Lsp1109I	GCAGC	5 cut(s)	17, 26, 177, 190, 465
LweI	GCATC	1 cut(s)	703
MaeI	CTAG	1 cut(s)	734
MalI	GATC	6 cut(s)	191, 275, 303, 626, 630, 723
MbiI	CCGCTC	1 cut(s)	147
MboI	GATC	6 cut(s)	189, 273, 301, 624, 628, 721
MboII	GAAGA	6 cut(s)	25, 133, 577, 749, 768, 860
MflI	RGATCY	2 cut(s)	301, 721
MhlI	GDGCHC	1 cut(s)	810
MluCI	AATT	2 cut(s)	394, 801
Mly113I	GGCGCC	1 cut(s)	63
MmeI	TCCRAC	1 cut(s)	292
Mph1103I	ATGCAT	4 cut(s)	360, 424, 453, 660
MroI	TCCGGA	1 cut(s)	398
MseI	TTAA	4 cut(s)	81, 444, 539, 858
MspA1I	CMGCKG	4 cut(s)	17, 203, 478, 839
MspI	CCGG	4 cut(s)	23, 249, 305, 399
MspR9I	CCNGG	4 cut(s)	71, 218, 764, 863
Mva1269I	GAATGC	1 cut(s)	424
MvaI	CCWGG	4 cut(s)	71, 218, 764, 863
MvnI	CGCG	3 cut(s)	129, 467, 839
MwoI	GCNNNNNNNGC	8 cut(s)	11, 14, 71, 203, 305, 487, 842, 872
NarI	GGCGCC	1 cut(s)	63
NdeI	CATATG	1 cut(s)	660
NdeII	GATC	6 cut(s)	189, 273, 301, 624, 628, 721
NlaIII	CATG	4 cut(s)	358, 362, 490, 537
NlaIV	GGNNCC	6 cut(s)	64, 253, 303, 559, 723, 809
NmeAIII	GCCGAG	1 cut(s)	141
NsiI	ATGCAT	4 cut(s)	360, 424, 453, 660
PciSI	GCTCTTC	1 cut(s)	873
PcsI	WCGNNNNNNNCGW	1 cut(s)	120
PctI	GAATGC	1 cut(s)	424
PfeI	GAWTC	1 cut(s)	266
PflFI	GACNNNGTC	1 cut(s)	119
PkrI	GCNGC	8 cut(s)	7, 16, 76, 167, 205, 480, 483, 838
PluTI	GGCGCC	1 cut(s)	66
Psp6I	CCWGG	4 cut(s)	69, 216, 762, 861
PspFI	CCCAGC	1 cut(s)	341
PspGI	CCWGG	4 cut(s)	69, 216, 762, 861
PspN4I	GGNNCC	6 cut(s)	64, 253, 303, 559, 723, 809
PspPI	GGNCC	5 cut(s)	20, 25, 251, 505, 834
PsuI	RGATCY	2 cut(s)	301, 721
PsyI	GACNNNGTC	1 cut(s)	119
PvuII	CAGCTG	2 cut(s)	17, 478
SacII	CCGCGG	1 cut(s)	840
SapI	GCTCTTC	1 cut(s)	873
SaqAI	TTAA	4 cut(s)	81, 444, 539, 858
SatI	GCNGC	8 cut(s)	6, 15, 75, 166, 204, 479, 482, 837
Sau3AI	GATC	6 cut(s)	189, 273, 301, 624, 628, 721
Sau96I	GGNCC	5 cut(s)	20, 25, 251, 505, 834
ScrFI	CCNGG	4 cut(s)	71, 218, 764, 863
SduI	GDGCHC	1 cut(s)	810
SfaNI	GCATC	1 cut(s)	703
SfoI	GGCGCC	1 cut(s)	64
Sfr303I	CCGCGG	1 cut(s)	840
SgrBI	CCGCGG	1 cut(s)	840
SinI	GGWCC	3 cut(s)	20, 25, 505
Sse9I	AATT	2 cut(s)	394, 801
SsiI	CCGC	9 cut(s)	43, 75, 145, 201, 299, 467, 481, 837, 839
SspDI	GGCGCC	1 cut(s)	62
SspMI	CTAG	1 cut(s)	734
StyD4I	CCNGG	4 cut(s)	69, 216, 762, 861
TaaI	ACNGT	1 cut(s)	349
TaqI	TCGA	4 cut(s)	123, 192, 269, 627
TasI	AATT	2 cut(s)	394, 801
TauI	GCSGC	3 cut(s)	77, 484, 839
TfiI	GAWTC	1 cut(s)	266
Tru1I	TTAA	4 cut(s)	81, 444, 539, 858
Tru9I	TTAA	4 cut(s)	81, 444, 539, 858
TscAI	CASTG	3 cut(s)	15, 555, 708
TseI	GCWGC	5 cut(s)	5, 14, 165, 203, 478
TspDTI	ATGAA	3 cut(s)	343, 390, 690
TspRI	CASTG	3 cut(s)	15, 555, 708
Tth111I	GACNNNGTC	1 cut(s)	119
VpaK11BI	GGWCC	3 cut(s)	20, 25, 505
XcmI	CCANNNNNNNNNTGG	1 cut(s)	800
XspI	CTAG	1 cut(s)	734
Zsp2I	ATGCAT	4 cut(s)	360, 424, 453, 660

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.