Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012024

Physical Location & Seq

Genomic Coordinates Forward (+)

14702488 .. 14704371

Gene Structure 1884 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G34840.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGTCAGCCATGGGAGCAGGACCAGATCACCTCTTCAACCTCAGAAACAATTTCTATTTGGGAGCTTATCAAACGGCGATCAACAACAGCGAGATCGCCAACCTCTCGCCGGAAAACGCCGTGGAACGTGACTGTCTCGTCTTCCGATCTTACATCGCCCTCGGTAGCTATCAGCTTGTTATCAGTGAGATCGATGAATCAGCCGCTACTCCACTACAAGCAGTCAAACTCCTCGCTATGTATCTATCGACTCCTCAAAATAAGGAATCAACAATTTCAAGCTTGAAGGAATGGTTAGCAGATTCAACAATAGGAAACAATGATACATTACGATTGATTGCTGGTATTATTTTCATGCATGAAGAAGATTATAATGAAACTTTGAAGCATACTCATGCTGGAGGAACTATGGATTTGTATGCCTTGAATGTTCAGATATTCATTAAGATGCATAGAGCAGAGTATGCTGAGAAGCAGCTTAGAGTGATGCAACAGATTGATGAAGACCACACTCTCACTCAACTTGCTAGCGCTTGGTTGAACCTGGCAGTGGGCGGTTCGAAGATACAGGAAGCTTATCTCATTTTCGAGGATTTTTCTGAGAAGTACCCAATGACATGCTTGATCTTGAATGGCAAAGCTGTTTGCTGTATGCAAATGGGTAACTTCGATGAAGCTGAAACACTACTTCTTGAAGCACTCAACAAGGATGCTAAAGATCCAGAAACTCTTGCAAATCTTGTTGTGTGCAGTCTTCATGTCGGGAAGTCTTCTTCACGCCACCTAAGCCAGCTAAAACTTTCACACCCGGAACACATACTTGTGAAGCGTGTATCATCAGCTGAAGATAACTTCGAGAGAGCAGTTCAATTGGTCGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005798 GO:0005829 GO:0006810 GO:0006888 GO:0006890 GO:0006891 GO:0008150 GO:0012505 GO:0012506 GO:0016020 GO:0016192 GO:0030117 GO:0030120 GO:0030126 GO:0030135 GO:0030137 GO:0030659 GO:0030660 GO:0030662 GO:0030663 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Coatomer_E

Protein Analysis

293

Amino Acids

32.66

Weight (kDa)

5.12

Isoelectric Point (pI)

44.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Coatomer_E	PF04733	1 - 213	2.7e-102	Coatomer epsilon subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30630 AT2G34840 AT2G34840
fragaria_vesca	FvH4_3g11400 FvH4_3g11400
malus_domestica	MD05G1263700.v1.1 MD10G1241400.v1.1
prunus_persica	Prupe.4G101800_v2.0.a1
pyrus_communis	pycom05g24770 pycom10g20240
rosa_chinensis	RchiOBHm_Chr5g0018341
rosa_laevigata	RLG00000032353
rosa_multiflora	Rmu_sc0004464.1_g000001
rosa_roxburghii	Rroxscaffold_1G00059400
rosa_rugosa	Rorug05G0041600
rosa_samantha	Rh5BG133500 Rh5CG145300 Rh5DG134900
rosa_wichuraiana	Rw5G011780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	372
AasI	GACNNNNNNGTC	1 cut(s)	137
AciI	CCGC	2 cut(s)	204, 555
AclWI	GGATC	1 cut(s)	713
AcuI	CTGAAG	1 cut(s)	864
AfaI	GTAC	1 cut(s)	608
AfeI	AGCGCT	1 cut(s)	532
AfiI	CCNNNNNNNGG	2 cut(s)	109, 550
AjnI	CCWGG	1 cut(s)	543
Alw26I	GTCTC	1 cut(s)	140
AlwI	GGATC	1 cut(s)	713
Aor51HI	AGCGCT	1 cut(s)	532
ApeKI	GCWGC	1 cut(s)	475
AspLEI	GCGC	1 cut(s)	533
AspS9I	GGNCC	1 cut(s)	20
AsuC2I	CCSGG	1 cut(s)	809
AsuHPI	GGTGA	1 cut(s)	20
AsuII	TTCGAA	1 cut(s)	560
AsuNHI	GCTAGC	1 cut(s)	527
AvaII	GGWCC	1 cut(s)	20
BbsI	GAAGAC	4 cut(s)	133, 510, 746, 762
BbvI	GCAGC	1 cut(s)	487
BceAI	ACGGC	2 cut(s)	90, 104
BciT130I	CCWGG	1 cut(s)	545
BcnI	CCSGG	1 cut(s)	809
BcoDI	GTCTC	1 cut(s)	140
BfaI	CTAG	1 cut(s)	528
BfoI	RGCGCY	1 cut(s)	534
BisI	GCNGC	2 cut(s)	204, 476
BlsI	GCNGC	2 cut(s)	205, 477
Bme1390I	CCNGG	2 cut(s)	545, 809
Bme18I	GGWCC	1 cut(s)	20
BmgT120I	GGNCC	1 cut(s)	20
BmrFI	CCNGG	2 cut(s)	545, 809
BmsI	GCATC	3 cut(s)	438, 477, 700
BmtI	GCTAGC	1 cut(s)	531
BpiI	GAAGAC	4 cut(s)	133, 510, 746, 762
BpmI	CTGGAG	1 cut(s)	420
Bpu10I	CCTNAGC	1 cut(s)	785
Bpu14I	TTCGAA	1 cut(s)	560
BpuMI	CCSGG	1 cut(s)	809
Bsa29I	ATCGAT	1 cut(s)	192
BsaJI	CCNNGG	3 cut(s)	9, 120, 160
Bsc4I	CCNNNNNNNGG	2 cut(s)	109, 550
BseBI	CCWGG	1 cut(s)	545
BseCI	ATCGAT	1 cut(s)	192
BseDI	CCNNGG	3 cut(s)	9, 120, 160
BseGI	GGATG	1 cut(s)	715
BseLI	CCNNNNNNNGG	2 cut(s)	109, 550
BseMII	CTCAG	3 cut(s)	55, 459, 591
BseRI	GAGGAG	2 cut(s)	221, 243
BseXI	GCAGC	1 cut(s)	487
BsgI	GTGCAG	1 cut(s)	769
BshVI	ATCGAT	1 cut(s)	192
BsiSI	CCGG	2 cut(s)	110, 809
BslI	CCNNNNNNNGG	2 cut(s)	109, 550
BsmAI	GTCTC	1 cut(s)	140
Bsp119I	TTCGAA	1 cut(s)	560
Bsp143I	GATC	7 cut(s)	25, 78, 93, 146, 189, 624, 718
Bsp19I	CCATGG	1 cut(s)	9
BspACI	CCGC	2 cut(s)	204, 555
BspCNI	CTCAG	3 cut(s)	54, 460, 592
BspDI	ATCGAT	1 cut(s)	192
BspOI	GCTAGC	1 cut(s)	531
BspPI	GGATC	1 cut(s)	713
BspT104I	TTCGAA	1 cut(s)	560
BssECI	CCNNGG	3 cut(s)	9, 120, 160
BssMI	GATC	7 cut(s)	25, 78, 93, 146, 189, 624, 718
BssT1I	CCWWGG	1 cut(s)	9
Bst2UI	CCWGG	1 cut(s)	545
Bst4CI	ACNGT	1 cut(s)	134
Bst6I	CTCTTC	1 cut(s)	38
BstAPI	GCANNNNNTGC	1 cut(s)	464
BstBI	TTCGAA	1 cut(s)	560
BstC8I	GCNNGC	2 cut(s)	529, 791
BstDEI	CTNAG	5 cut(s)	41, 468, 479, 600, 785
BstDSI	CCRYGG	2 cut(s)	9, 120
BstF5I	GGATG	1 cut(s)	715
BstH2I	RGCGCY	1 cut(s)	534
BstHHI	GCGC	1 cut(s)	533
BstKTI	GATC	7 cut(s)	28, 81, 96, 149, 192, 627, 721
BstMAI	GTCTC	1 cut(s)	140
BstMBI	GATC	7 cut(s)	25, 78, 93, 146, 189, 624, 718
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 464, 786
BstNI	CCWGG	1 cut(s)	545
BstNSI	RCATGY	1 cut(s)	621
BstSCI	CCNGG	2 cut(s)	543, 807
BstV1I	GCAGC	1 cut(s)	487
BstV2I	GAAGAC	4 cut(s)	133, 510, 746, 762
BstX2I	RGATCY	1 cut(s)	718
BstYI	RGATCY	1 cut(s)	718
Bsu15I	ATCGAT	1 cut(s)	192
BsuTUI	ATCGAT	1 cut(s)	192
BtgI	CCRYGG	2 cut(s)	9, 120
BtgZI	GCGATG	1 cut(s)	139
BtsCI	GGATG	1 cut(s)	715
BtsI	GCAGTG	1 cut(s)	555
BtsIMutI	CAGTG	2 cut(s)	190, 555
Cac8I	GCNNGC	2 cut(s)	529, 791
CfoI	GCGC	1 cut(s)	533
Cfr13I	GGNCC	1 cut(s)	20
ClaI	ATCGAT	1 cut(s)	192
Csp6I	GTAC	1 cut(s)	607
CviAII	CATG	6 cut(s)	10, 355, 359, 395, 618, 758
CviQI	GTAC	1 cut(s)	607
DdeI	CTNAG	5 cut(s)	41, 468, 479, 600, 785
DpnI	GATC	7 cut(s)	27, 80, 95, 148, 191, 626, 720
DpnII	GATC	7 cut(s)	25, 78, 93, 146, 189, 624, 718
DrdI	GACNNNNNNGTC	1 cut(s)	137
DseDI	GACNNNNNNGTC	1 cut(s)	137
Eam1104I	CTCTTC	1 cut(s)	38
EarI	CTCTTC	1 cut(s)	38
Eco130I	CCWWGG	1 cut(s)	9
Eco47I	GGWCC	1 cut(s)	20
Eco47III	AGCGCT	1 cut(s)	532
Eco57I	CTGAAG	1 cut(s)	864
EcoRII	CCWGG	1 cut(s)	543
EcoT14I	CCWWGG	1 cut(s)	9
EcoT22I	ATGCAT	2 cut(s)	360, 453
ErhI	CCWWGG	1 cut(s)	9
FaeI	CATG	6 cut(s)	13, 358, 362, 398, 621, 761
FatI	CATG	6 cut(s)	9, 354, 358, 394, 617, 757
Fnu4HI	GCNGC	2 cut(s)	204, 476
FokI	GGATG	1 cut(s)	722
Fsp4HI	GCNGC	2 cut(s)	204, 476
FspBI	CTAG	1 cut(s)	528
GlaI	GCGC	1 cut(s)	532
GluI	GCNGC	2 cut(s)	204, 476
GsuI	CTGGAG	1 cut(s)	420
HaeII	RGCGCY	1 cut(s)	534
HapII	CCGG	2 cut(s)	110, 809
HhaI	GCGC	1 cut(s)	533
Hin1II	CATG	6 cut(s)	13, 358, 362, 398, 621, 761
Hin6I	GCGC	1 cut(s)	531
HinP1I	GCGC	1 cut(s)	531
HindIII	AAGCTT	2 cut(s)	280, 573
HinfI	GANTC	4 cut(s)	197, 250, 266, 302
HpaII	CCGG	2 cut(s)	110, 809
HphI	GGTGA	1 cut(s)	20
Hpy188I	TCNGA	4 cut(s)	44, 146, 435, 601
Hpy188III	TCNNGA	5 cut(s)	628, 692, 722, 763, 856
HpyAV	CCTTC	1 cut(s)	280
HpyCH4III	ACNGT	1 cut(s)	134
HpyCH4IV	ACGT	1 cut(s)	127
HpyCH4V	TGCA	6 cut(s)	358, 451, 490, 655, 734, 750
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 464, 786
HpyF3I	CTNAG	5 cut(s)	41, 468, 479, 600, 785
HpySE526I	ACGT	1 cut(s)	127
Hsp92II	CATG	6 cut(s)	13, 358, 362, 398, 621, 761
HspAI	GCGC	1 cut(s)	531
Kzo9I	GATC	7 cut(s)	25, 78, 93, 146, 189, 624, 718
LmnI	GCTCC	2 cut(s)	14, 62
Lsp1109I	GCAGC	1 cut(s)	487
LweI	GCATC	3 cut(s)	438, 477, 700
MaeI	CTAG	1 cut(s)	528
MaeII	ACGT	1 cut(s)	127
MaeIII	GTNAC	2 cut(s)	128, 662
MalI	GATC	7 cut(s)	27, 80, 95, 148, 191, 626, 720
MboI	GATC	7 cut(s)	25, 78, 93, 146, 189, 624, 718
MfeI	CAATTG	1 cut(s)	869
MflI	RGATCY	1 cut(s)	718
MluCI	AATT	3 cut(s)	49, 273, 869
MlyI	GAGTC	1 cut(s)	244
MnlI	CCTC	8 cut(s)	41, 50, 113, 170, 242, 264, 395, 583
Mph1103I	ATGCAT	2 cut(s)	360, 453
MseI	TTAA	1 cut(s)	444
MslI	CAYNNNNRTG	3 cut(s)	393, 446, 821
MspA1I	CMGCKG	1 cut(s)	842
MspI	CCGG	2 cut(s)	110, 809
MspR9I	CCNGG	2 cut(s)	545, 809
MunI	CAATTG	1 cut(s)	869
MvaI	CCWGG	1 cut(s)	545
MwoI	GCNNNNNNNGC	3 cut(s)	14, 464, 786
NciI	CCSGG	1 cut(s)	809
NcoI	CCATGG	1 cut(s)	9
NdeII	GATC	7 cut(s)	25, 78, 93, 146, 189, 624, 718
NheI	GCTAGC	1 cut(s)	527
NlaIII	CATG	6 cut(s)	13, 358, 362, 398, 621, 761
NmuCI	GTSAC	1 cut(s)	128
NsiI	ATGCAT	2 cut(s)	360, 453
NspI	RCATGY	1 cut(s)	621
NspV	TTCGAA	1 cut(s)	560
PfeI	GAWTC	3 cut(s)	197, 266, 302
PkrI	GCNGC	2 cut(s)	205, 477
PleI	GAGTC	1 cut(s)	244
PpsI	GAGTC	1 cut(s)	244
PsiI	TTATAA	1 cut(s)	372
Psp6I	CCWGG	1 cut(s)	543
PspGI	CCWGG	1 cut(s)	543
PspPI	GGNCC	1 cut(s)	20
PsuI	RGATCY	1 cut(s)	718
PvuII	CAGCTG	1 cut(s)	842
RsaI	GTAC	1 cut(s)	608
RsaNI	GTAC	1 cut(s)	607
RseI	CAYNNNNRTG	3 cut(s)	393, 446, 821
SaqAI	TTAA	1 cut(s)	444
SatI	GCNGC	2 cut(s)	204, 476
Sau3AI	GATC	7 cut(s)	25, 78, 93, 146, 189, 624, 718
Sau96I	GGNCC	1 cut(s)	20
SchI	GAGTC	1 cut(s)	244
ScrFI	CCNGG	2 cut(s)	545, 809
SfaNI	GCATC	3 cut(s)	438, 477, 700
SfuI	TTCGAA	1 cut(s)	560
SinI	GGWCC	1 cut(s)	20
SmiMI	CAYNNNNRTG	3 cut(s)	393, 446, 821
Sse9I	AATT	3 cut(s)	49, 273, 869
SsiI	CCGC	2 cut(s)	204, 555
SspMI	CTAG	1 cut(s)	528
StyD4I	CCNGG	2 cut(s)	543, 807
StyI	CCWWGG	1 cut(s)	9
TaaI	ACNGT	1 cut(s)	134
TaiI	ACGT	1 cut(s)	130
TaqI	TCGA	6 cut(s)	192, 248, 560, 588, 669, 855
TasI	AATT	3 cut(s)	49, 273, 869
TauI	GCSGC	1 cut(s)	206
TfiI	GAWTC	3 cut(s)	197, 266, 302
Tru1I	TTAA	1 cut(s)	444
Tru9I	TTAA	1 cut(s)	444
TscAI	CASTG	2 cut(s)	190, 555
TseFI	GTSAC	1 cut(s)	128
TseI	GCWGC	1 cut(s)	475
Tsp45I	GTSAC	1 cut(s)	128
TspDTI	ATGAA	8 cut(s)	210, 343, 375, 390, 430, 516, 687, 746
TspRI	CASTG	2 cut(s)	190, 555
VpaK11BI	GGWCC	1 cut(s)	20
XceI	RCATGY	1 cut(s)	621
XspI	CTAG	1 cut(s)	528
Zsp2I	ATGCAT	2 cut(s)	360, 453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.