Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0012024

Physical Location & Seq

Genomic Coordinates Reverse (-)

5205093 .. 5208167

Gene Structure 3075 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G101800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGCAGCAGTAGCAGCAGGACCAGACCACCTCTTCAATCTTCGCAACAACTTCTACTTGGGCGCCTACCAGGCCGCCATTAACAACAGCGAGCTTCCCAATCTCTCTCCAGACGACGCCGTCGAGAGAGACTGCCTCGTCTTCCGCTCTTACATAGCCCTCGGCAGCTACCAACTCGTCATCAATGAGATCGACGCCTCCGCCGCCACGCCTCTCCAGGCCGTCAAGCTCCTCGCTCTCTACCTCACCGGCCCCGATTACAGGGAATCGGCGATCTCGAGTCTAAAGGAGTTGTTGGCAGATCCGGGCATCGGAAACAACCCTATTCTGAGGCTGATTGCTGGGACAGTCTTCATGCATGAACAGGACTACAATGAAGCACTCAAACACACCAATGCTGGAGGCACAATGGAGCTGAATGCATTGAATATCCAAATATTCCTTAAAATGCATAGGTCAGATTATGCTGAGAGACAGCTGAGGGTCATGCAACAGGTTGACGAGGACCACACACTAACTCAACTTGCGAATGCATGGTTGAATCTGGCAGTGGGTGGTTCAAAGATACAGGAGGCATATCTCATCTTCCAAGATTTCTCTGAGAAGTCTCAGGTTACAAGTTTGATCCTGAATGGAAAGGCTGTTTGCTGCATGCACATGGGAAACTTTGATGAAGCTGAAAGCCTTCTTGTTGAAGCACTGACCAAGGATGCAAAGGATCCGGAAACTCTGGCCAACCTCGTTGTATGCTATCTTCACCTTGGAAAATCACCTTCTCGTTTTCTCAGCCAATTGAAACTTGGGCACCCAGATCACGTGCTCGTCAAACGGGCCGCAGCTGCAGAAGAGGGATTTGACAGAGCTATCCAATCAGTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005798 GO:0005829 GO:0006810 GO:0006888 GO:0006890 GO:0006891 GO:0008150 GO:0012505 GO:0012506 GO:0016020 GO:0016192 GO:0030117 GO:0030120 GO:0030126 GO:0030135 GO:0030137 GO:0030659 GO:0030660 GO:0030662 GO:0030663 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Coatomer_E

Protein Analysis

294

Amino Acids

32.19

Weight (kDa)

5.16

Isoelectric Point (pI)

39.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30630 AT2G34840 AT2G34840
fragaria_vesca	FvH4_3g11400 FvH4_3g11400
malus_domestica	MD05G1263700.v1.1 MD10G1241400.v1.1
prunus_persica	Prupe.4G101800_v2.0.a1
pyrus_communis	pycom05g24770 pycom10g20240
rosa_chinensis	RchiOBHm_Chr5g0018341
rosa_laevigata	RLG00000032353
rosa_multiflora	Rmu_sc0004464.1_g000001
rosa_roxburghii	Rroxscaffold_1G00059400
rosa_rugosa	Rorug05G0041600
rosa_samantha	Rh5BG133500 Rh5CG145300 Rh5DG134900
rosa_wichuraiana	Rw5G011780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	119, 137
AccB1I	GGYRCC	2 cut(s)	62, 804
AccBSI	CCGCTC	1 cut(s)	147
AccIII	TCCGGA	1 cut(s)	721
AciI	CCGC	5 cut(s)	75, 145, 201, 204, 834
AclWI	GGATC	4 cut(s)	296, 619, 713, 726
AcoI	YGGCCR	1 cut(s)	732
AcvI	CACGTG	1 cut(s)	817
AcyI	GRCGYC	3 cut(s)	63, 117, 195
AfiI	CCNNNNNNNGG	2 cut(s)	261, 311
AgsI	TTSAA	6 cut(s)	37, 427, 541, 561, 695, 796
AjnI	CCWGG	2 cut(s)	69, 216
AluBI	AGCT	8 cut(s)	94, 168, 229, 415, 478, 677, 839, 863
AluI	AGCT	8 cut(s)	94, 168, 229, 415, 478, 677, 839, 863
Alw21I	GWGCWC	1 cut(s)	822
Alw26I	GTCTC	3 cut(s)	123, 466, 612
AlwI	GGATC	4 cut(s)	296, 619, 713, 726
Ama87I	CYCGRG	1 cut(s)	277
Aor13HI	TCCGGA	1 cut(s)	721
AoxI	GGCC	5 cut(s)	72, 219, 250, 732, 831
ApeKI	GCWGC	6 cut(s)	5, 14, 165, 648, 836, 839
Asp700I	GAANNNNTTC	1 cut(s)	684
AspLEI	GCGC	1 cut(s)	65
AspS9I	GGNCC	4 cut(s)	20, 251, 505, 831
AsuC2I	CCSGG	1 cut(s)	306
AsuHPI	GGTGA	3 cut(s)	238, 749, 762
AvaI	CYCGRG	1 cut(s)	277
AvaII	GGWCC	2 cut(s)	20, 505
BaeGI	GKGCMC	1 cut(s)	807
BalI	TGGCCA	1 cut(s)	734
BamHI	GGATCC	1 cut(s)	718
BanI	GGYRCC	2 cut(s)	62, 804
BarI	GAAGNNNNNNTAC	2 cut(s)	738, 770
BbrPI	CACGTG	1 cut(s)	817
BbsI	GAAGAC	2 cut(s)	133, 343
Bbv12I	GWGCWC	1 cut(s)	822
BbvCI	CCTCAGC	1 cut(s)	479
BbvI	GCAGC	6 cut(s)	17, 26, 177, 635, 826, 848
BceAI	ACGGC	2 cut(s)	104, 206
BciT130I	CCWGG	2 cut(s)	71, 218
BcnI	CCSGG	1 cut(s)	306
BcoDI	GTCTC	3 cut(s)	123, 466, 612
BfmI	CTRYAG	1 cut(s)	840
BfoI	RGCGCY	1 cut(s)	66
BglI	GCCNNNNNGGC	1 cut(s)	71
BisI	GCNGC	9 cut(s)	6, 15, 75, 166, 204, 649, 834, 837, 840
BlsI	GCNGC	9 cut(s)	7, 16, 76, 167, 205, 650, 835, 838, 841
Bme1390I	CCNGG	3 cut(s)	71, 218, 306
Bme18I	GGWCC	2 cut(s)	20, 505
BmeT110I	CYCGRG	1 cut(s)	277
BmgT120I	GGNCC	4 cut(s)	20, 251, 505, 831
BmiI	GGNNCC	4 cut(s)	64, 253, 720, 806
BmrFI	CCNGG	3 cut(s)	71, 218, 306
BmsI	GCATC	2 cut(s)	318, 700
BpiI	GAAGAC	2 cut(s)	133, 343
BplI	GAGNNNNNCTC	2 cut(s)	120, 152
BpmI	CTGGAG	3 cut(s)	93, 200, 420
Bpu10I	CCTNAGC	1 cut(s)	479
BpuMI	CCSGG	1 cut(s)	306
BsaAI	YACGTR	1 cut(s)	817
BsaHI	GRCGYC	3 cut(s)	63, 117, 195
BsaJI	CCNNGG	3 cut(s)	160, 705, 760
BsaWI	WCCGGW	1 cut(s)	721
Bsc4I	CCNNNNNNNGG	2 cut(s)	261, 311
Bse118I	RCCGGY	1 cut(s)	248
BseAI	TCCGGA	1 cut(s)	721
BseBI	CCWGG	2 cut(s)	71, 218
BseDI	CCNNGG	3 cut(s)	160, 705, 760
BseGI	GGATG	1 cut(s)	715
BseLI	CCNNNNNNNGG	2 cut(s)	261, 311
BseMII	CTCAG	6 cut(s)	320, 459, 470, 591, 623, 799
BseRI	GAGGAG	1 cut(s)	221
BseSI	GKGCMC	1 cut(s)	807
BseXI	GCAGC	6 cut(s)	17, 26, 177, 635, 826, 848
BseYI	CCCAGC	1 cut(s)	341
BshFI	GGCC	5 cut(s)	74, 221, 252, 734, 833
BshNI	GGYRCC	2 cut(s)	62, 804
BsiHKAI	GWGCWC	1 cut(s)	822
BsiHKCI	CYCGRG	1 cut(s)	277
BsiSI	CCGG	3 cut(s)	249, 305, 722
BslFI	GGGAC	1 cut(s)	358
BslI	CCNNNNNNNGG	2 cut(s)	261, 311
BsmAI	GTCTC	3 cut(s)	123, 466, 612
BsmFI	GGGAC	1 cut(s)	358
BsmI	GAATGC	2 cut(s)	424, 535
BsnI	GGCC	5 cut(s)	74, 221, 252, 734, 833
BsoBI	CYCGRG	1 cut(s)	277
Bsp1286I	GDGCHC	2 cut(s)	807, 822
Bsp13I	TCCGGA	1 cut(s)	721
Bsp143I	GATC	6 cut(s)	189, 273, 301, 624, 718, 811
BspACI	CCGC	5 cut(s)	75, 145, 201, 204, 834
BspANI	GGCC	5 cut(s)	74, 221, 252, 734, 833
BspCNI	CTCAG	6 cut(s)	321, 460, 471, 592, 622, 798
BspEI	TCCGGA	1 cut(s)	721
BspLI	GGNNCC	4 cut(s)	64, 253, 720, 806
BspMAI	CTGCAG	1 cut(s)	844
BspPI	GGATC	4 cut(s)	296, 619, 713, 726
BspT107I	GGYRCC	2 cut(s)	62, 804
BsrBI	CCGCTC	1 cut(s)	147
BsrFI	RCCGGY	1 cut(s)	248
BssAI	RCCGGY	1 cut(s)	248
BssECI	CCNNGG	3 cut(s)	160, 705, 760
BssMI	GATC	6 cut(s)	189, 273, 301, 624, 718, 811
BssNI	GRCGYC	3 cut(s)	63, 117, 195
BssT1I	CCWWGG	2 cut(s)	705, 760
Bst2UI	CCWGG	2 cut(s)	71, 218
Bst4CI	ACNGT	1 cut(s)	349
Bst6I	CTCTTC	2 cut(s)	38, 840
BstACI	GRCGYC	3 cut(s)	63, 117, 195
BstBAI	YACGTR	1 cut(s)	817
BstC8I	GCNNGC	2 cut(s)	92, 653
BstDEI	CTNAG	6 cut(s)	329, 468, 479, 600, 609, 785
BstF5I	GGATG	1 cut(s)	715
BstH2I	RGCGCY	1 cut(s)	66
BstHHI	GCGC	1 cut(s)	65
BstKTI	GATC	6 cut(s)	192, 276, 304, 627, 721, 814
BstMAI	GTCTC	3 cut(s)	123, 466, 612
BstMBI	GATC	6 cut(s)	189, 273, 301, 624, 718, 811
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 14, 71, 203, 839
BstNI	CCWGG	2 cut(s)	71, 218
BstNSI	RCATGY	1 cut(s)	655
BstSCI	CCNGG	3 cut(s)	69, 216, 304
BstSFI	CTRYAG	1 cut(s)	840
BstSLI	GKGCMC	1 cut(s)	807
BstV1I	GCAGC	6 cut(s)	17, 26, 177, 635, 826, 848
BstV2I	GAAGAC	2 cut(s)	133, 343
BstX2I	RGATCY	2 cut(s)	301, 718
BstYI	RGATCY	2 cut(s)	301, 718
BsuRI	GGCC	5 cut(s)	74, 221, 252, 734, 833
BtsCI	GGATG	1 cut(s)	715
BtsI	GCAGTG	1 cut(s)	555
BtsIMutI	CAGTG	2 cut(s)	555, 698
Cac8I	GCNNGC	2 cut(s)	92, 653
CfoI	GCGC	1 cut(s)	65
Cfr10I	RCCGGY	1 cut(s)	248
Cfr13I	GGNCC	4 cut(s)	20, 251, 505, 831
CseI	GACGC	2 cut(s)	125, 203
CviAII	CATG	6 cut(s)	355, 359, 487, 534, 652, 658
DdeI	CTNAG	6 cut(s)	329, 468, 479, 600, 609, 785
DinI	GGCGCC	1 cut(s)	64
DpnI	GATC	6 cut(s)	191, 275, 303, 626, 720, 813
DpnII	GATC	6 cut(s)	189, 273, 301, 624, 718, 811
DrdI	GACNNNNNNGTC	2 cut(s)	119, 137
DseDI	GACNNNNNNGTC	2 cut(s)	119, 137
EaeI	YGGCCR	1 cut(s)	732
Eam1104I	CTCTTC	2 cut(s)	38, 840
EarI	CTCTTC	2 cut(s)	38, 840
EciI	GGCGGA	1 cut(s)	190
Eco130I	CCWWGG	2 cut(s)	705, 760
Eco47I	GGWCC	2 cut(s)	20, 505
Eco72I	CACGTG	1 cut(s)	817
Eco88I	CYCGRG	1 cut(s)	277
EcoRII	CCWGG	2 cut(s)	69, 216
EcoT14I	CCWWGG	2 cut(s)	705, 760
EcoT22I	ATGCAT	4 cut(s)	360, 424, 453, 535
EgeI	GGCGCC	1 cut(s)	64
EheI	GGCGCC	1 cut(s)	64
ErhI	CCWWGG	2 cut(s)	705, 760
FaeI	CATG	6 cut(s)	358, 362, 490, 537, 655, 661
FaqI	GGGAC	1 cut(s)	358
FatI	CATG	6 cut(s)	354, 358, 486, 533, 651, 657
Fnu4HI	GCNGC	9 cut(s)	6, 15, 75, 166, 204, 649, 834, 837, 840
FokI	GGATG	1 cut(s)	722
Fsp4HI	GCNGC	9 cut(s)	6, 15, 75, 166, 204, 649, 834, 837, 840
GlaI	GCGC	1 cut(s)	64
GluI	GCNGC	9 cut(s)	6, 15, 75, 166, 204, 649, 834, 837, 840
GsaI	CCCAGC	1 cut(s)	345
GsuI	CTGGAG	3 cut(s)	93, 200, 420
HaeII	RGCGCY	1 cut(s)	66
HaeIII	GGCC	5 cut(s)	74, 221, 252, 734, 833
HapII	CCGG	3 cut(s)	249, 305, 722
HgaI	GACGC	2 cut(s)	125, 203
HhaI	GCGC	1 cut(s)	65
Hin1I	GRCGYC	3 cut(s)	63, 117, 195
Hin1II	CATG	6 cut(s)	358, 362, 490, 537, 655, 661
Hin6I	GCGC	1 cut(s)	63
HinP1I	GCGC	1 cut(s)	63
HincII	GTYRAC	1 cut(s)	499
HindII	GTYRAC	1 cut(s)	499
HinfI	GANTC	3 cut(s)	266, 280, 541
HpaII	CCGG	3 cut(s)	249, 305, 722
HphI	GGTGA	3 cut(s)	238, 749, 762
Hpy166II	GTNNAC	1 cut(s)	499
Hpy188I	TCNGA	4 cut(s)	314, 330, 460, 601
Hpy188III	TCNNGA	5 cut(s)	110, 124, 277, 628, 722
Hpy8I	GTNNAC	1 cut(s)	499
Hpy99I	CGWCG	3 cut(s)	119, 125, 197
HpyAV	CCTTC	2 cut(s)	695, 783
HpyCH4III	ACNGT	1 cut(s)	349
HpyCH4IV	ACGT	1 cut(s)	816
HpyCH4V	TGCA	9 cut(s)	358, 422, 451, 490, 533, 651, 655, 713, 842
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 14, 71, 203, 839
HpyF3I	CTNAG	6 cut(s)	329, 468, 479, 600, 609, 785
HpySE526I	ACGT	1 cut(s)	816
Hsp92I	GRCGYC	3 cut(s)	63, 117, 195
Hsp92II	CATG	6 cut(s)	358, 362, 490, 537, 655, 661
HspAI	GCGC	1 cut(s)	63
KasI	GGCGCC	1 cut(s)	62
Kpn2I	TCCGGA	1 cut(s)	721
Kzo9I	GATC	6 cut(s)	189, 273, 301, 624, 718, 811
LmnI	GCTCC	2 cut(s)	234, 412
Lsp1109I	GCAGC	6 cut(s)	17, 26, 177, 635, 826, 848
LweI	GCATC	2 cut(s)	318, 700
MaeII	ACGT	1 cut(s)	816
MaeIII	GTNAC	1 cut(s)	613
MalI	GATC	6 cut(s)	191, 275, 303, 626, 720, 813
MbiI	CCGCTC	1 cut(s)	147
MboI	GATC	6 cut(s)	189, 273, 301, 624, 718, 811
MboII	GAAGA	7 cut(s)	25, 32, 133, 343, 577, 746, 857
MfeI	CAATTG	1 cut(s)	791
MflI	RGATCY	2 cut(s)	301, 718
MhlI	GDGCHC	2 cut(s)	807, 822
MlsI	TGGCCA	1 cut(s)	734
MluCI	AATT	1 cut(s)	791
MluNI	TGGCCA	1 cut(s)	734
Mly113I	GGCGCC	1 cut(s)	63
MlyI	GAGTC	1 cut(s)	289
Mox20I	TGGCCA	1 cut(s)	734
Mph1103I	ATGCAT	4 cut(s)	360, 424, 453, 535
MroI	TCCGGA	1 cut(s)	721
MroXI	GAANNNNTTC	1 cut(s)	684
MscI	TGGCCA	1 cut(s)	734
MseI	TTAA	2 cut(s)	81, 444
MslI	CAYNNNNRTG	2 cut(s)	393, 656
Msp20I	TGGCCA	1 cut(s)	734
MspA1I	CMGCKG	2 cut(s)	478, 839
MspI	CCGG	3 cut(s)	249, 305, 722
MspR9I	CCNGG	3 cut(s)	71, 218, 306
MunI	CAATTG	1 cut(s)	791
Mva1269I	GAATGC	2 cut(s)	424, 535
MvaI	CCWGG	2 cut(s)	71, 218
MwoI	GCNNNNNNNGC	5 cut(s)	11, 14, 71, 203, 839
NarI	GGCGCC	1 cut(s)	63
NciI	CCSGG	1 cut(s)	306
NdeII	GATC	6 cut(s)	189, 273, 301, 624, 718, 811
NlaIII	CATG	6 cut(s)	358, 362, 490, 537, 655, 661
NlaIV	GGNNCC	4 cut(s)	64, 253, 720, 806
NmeAIII	GCCGAG	1 cut(s)	141
NsiI	ATGCAT	4 cut(s)	360, 424, 453, 535
NspI	RCATGY	1 cut(s)	655
PaeI	GCATGC	1 cut(s)	655
PaeR7I	CTCGAG	1 cut(s)	277
PcsI	WCGNNNNNNNCGW	2 cut(s)	120, 275
PctI	GAATGC	2 cut(s)	424, 535
PdmI	GAANNNNTTC	1 cut(s)	684
PfeI	GAWTC	2 cut(s)	266, 541
PflFI	GACNNNGTC	1 cut(s)	119
PkrI	GCNGC	9 cut(s)	7, 16, 76, 167, 205, 650, 835, 838, 841
PleI	GAGTC	1 cut(s)	288
PluTI	GGCGCC	1 cut(s)	66
PmaCI	CACGTG	1 cut(s)	817
PmlI	CACGTG	1 cut(s)	817
PpsI	GAGTC	1 cut(s)	288
Ppu21I	YACGTR	1 cut(s)	817
Psp6I	CCWGG	2 cut(s)	69, 216
PspCI	CACGTG	1 cut(s)	817
PspFI	CCCAGC	1 cut(s)	341
PspGI	CCWGG	2 cut(s)	69, 216
PspN4I	GGNNCC	4 cut(s)	64, 253, 720, 806
PspPI	GGNCC	4 cut(s)	20, 251, 505, 831
PstI	CTGCAG	1 cut(s)	844
PsuI	RGATCY	2 cut(s)	301, 718
PsyI	GACNNNGTC	1 cut(s)	119
PvuII	CAGCTG	2 cut(s)	478, 839
RseI	CAYNNNNRTG	2 cut(s)	393, 656
SaqAI	TTAA	2 cut(s)	81, 444
SatI	GCNGC	9 cut(s)	6, 15, 75, 166, 204, 649, 834, 837, 840
Sau3AI	GATC	6 cut(s)	189, 273, 301, 624, 718, 811
Sau96I	GGNCC	4 cut(s)	20, 251, 505, 831
SchI	GAGTC	1 cut(s)	289
ScrFI	CCNGG	3 cut(s)	71, 218, 306
SduI	GDGCHC	2 cut(s)	807, 822
SfaNI	GCATC	2 cut(s)	318, 700
SfcI	CTRYAG	1 cut(s)	840
SfoI	GGCGCC	1 cut(s)	64
Sfr274I	CTCGAG	1 cut(s)	277
SinI	GGWCC	2 cut(s)	20, 505
SlaI	CTCGAG	1 cut(s)	277
SmiMI	CAYNNNNRTG	2 cut(s)	393, 656
SmlI	CTYRAG	1 cut(s)	277
SmoI	CTYRAG	1 cut(s)	277
SphI	GCATGC	1 cut(s)	655
Sse9I	AATT	1 cut(s)	791
SsiI	CCGC	5 cut(s)	75, 145, 201, 204, 834
SspDI	GGCGCC	1 cut(s)	62
SspI	AATATT	1 cut(s)	438
StyD4I	CCNGG	3 cut(s)	69, 216, 304
StyI	CCWWGG	2 cut(s)	705, 760
TaaI	ACNGT	1 cut(s)	349
TaiI	ACGT	1 cut(s)	819
TaqI	TCGA	3 cut(s)	123, 192, 278
TasI	AATT	1 cut(s)	791
TauI	GCSGC	3 cut(s)	77, 206, 836
TfiI	GAWTC	2 cut(s)	266, 541
Tru1I	TTAA	2 cut(s)	81, 444
Tru9I	TTAA	2 cut(s)	81, 444
TscAI	CASTG	2 cut(s)	555, 705
TseI	GCWGC	6 cut(s)	5, 14, 165, 648, 836, 839
TspDTI	ATGAA	4 cut(s)	343, 375, 390, 687
TspRI	CASTG	2 cut(s)	555, 705
Tth111I	GACNNNGTC	1 cut(s)	119
VpaK11BI	GGWCC	2 cut(s)	20, 505
XceI	RCATGY	1 cut(s)	655
XcmI	CCANNNNNNNNNTGG	1 cut(s)	797
XhoI	CTCGAG	1 cut(s)	277
XmnI	GAANNNNTTC	1 cut(s)	684
Zsp2I	ATGCAT	4 cut(s)	360, 424, 453, 535

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.