Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0012024

Physical Location & Seq

Genomic Coordinates Forward (+)

33676391 .. 33678980

Gene Structure 2590 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1241400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGCAGCAGTGGCAGCAGGACCGGACCACCTCTTCAACCTCCGCAACAACTTCTACTTGGGAGCCTACCAGGCCTCCATTAACAACAGCGACATTCCCAACCTCACCCCCGACGAAGCCGTCGAGCGCGACTGCCTCGTCTTCCGCTCTTACATCGCCCTCGGCAGCTACCAGCTCGTCATCAACGAGATCGACGCCTCCGCCGCCACTCCTCTCCAGGCCGTCAAGCTCCTCGCCCTCTACCTCTCCGGCCCCGATTTCAAGGAATCGGCGATCGCGAATTTGAAGGAGTTGTTGGCGGATCCGGCCGTCGGAAACAACCCTACTCTGAGGCTGATTGCTGGGACGGTCTTCATGCATGAGCAGGACTACAATGAAGCTCTCAAATACACCAACGCCGGAGGCACTATGGAACTGAATGCATTGACTATCCAGATATTCCTTAAAATGCATAGGTCAGATTATGCTGAGAGACAGCTGCGGCTCATGCAACAGGTCGACGAGGACCACACACTAACTCAACTTGCAATGGCATGGTTAAGTCTGGCAGTGGGTGGTTCCAAAATACAGGAGGCATATCTCATCTACCAAGATTTATCTGAGAAGTCTCAGGTTACGAGTTTGATCCTCAATGGAAAGGCTGTTTGCTGTATGCATATGGGAAACTTTGATGAAGCTGAAACACTACTTCTTGAAGCACTGCAAAAGGATGCCAAGGATCCAGAAACTCTAGCCAACCTTGTTGTATGCTGTCTTCACCTTGGAAAACCATCTTCTCGTTTCCTCAGCCAGTTGAAAATTGGTCACCCAGATCACTTGCTCGTCAAACGGGCCTTGGAGGCAGAACAGAGCTTTAACCTAGCTGCTCTTCAAGCAGCTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005798 GO:0005829 GO:0006810 GO:0006888 GO:0006890 GO:0006891 GO:0008150 GO:0012505 GO:0012506 GO:0016020 GO:0016192 GO:0030117 GO:0030120 GO:0030126 GO:0030135 GO:0030137 GO:0030659 GO:0030660 GO:0030662 GO:0030663 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Coatomer_E

Protein Analysis

295

Amino Acids

32.26

Weight (kDa)

5.07

Isoelectric Point (pI)

35.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Coatomer_E	PF04733	8 - 291	3.8e-128	Coatomer epsilon subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30630 AT2G34840 AT2G34840
fragaria_vesca	FvH4_3g11400 FvH4_3g11400
malus_domestica	MD05G1263700.v1.1 MD10G1241400.v1.1
prunus_persica	Prupe.4G101800_v2.0.a1
pyrus_communis	pycom05g24770 pycom10g20240
rosa_chinensis	RchiOBHm_Chr5g0018341
rosa_laevigata	RLG00000032353
rosa_multiflora	Rmu_sc0004464.1_g000001
rosa_roxburghii	Rroxscaffold_1G00059400
rosa_rugosa	Rorug05G0041600
rosa_samantha	Rh5BG133500 Rh5CG145300 Rh5DG134900
rosa_wichuraiana	Rw5G011780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	119, 137
AccBSI	CCGCTC	1 cut(s)	147
AccI	GTMKAC	1 cut(s)	498
AccII	CGCG	2 cut(s)	129, 278
AciI	CCGC	6 cut(s)	43, 145, 201, 204, 299, 481
AclWI	GGATC	5 cut(s)	296, 309, 619, 713, 726
AcoI	YGGCCR	1 cut(s)	306
AcsI	RAATTY	1 cut(s)	280
AcyI	GRCGYC	1 cut(s)	195
AfiI	CCNNNNNNNGG	1 cut(s)	311
AgsI	TTSAA	6 cut(s)	37, 262, 286, 695, 796, 872
AjnI	CCWGG	2 cut(s)	69, 216
AjuI	GAANNNNNNNTTGG	2 cut(s)	278, 310
AluBI	AGCT	9 cut(s)	168, 175, 229, 380, 478, 677, 852, 863, 878
AluI	AGCT	9 cut(s)	168, 175, 229, 380, 478, 677, 852, 863, 878
Alw26I	GTCTC	2 cut(s)	466, 612
AlwI	GGATC	5 cut(s)	296, 309, 619, 713, 726
AoxI	GGCC	5 cut(s)	72, 219, 250, 306, 831
ApeKI	GCWGC	6 cut(s)	5, 14, 165, 478, 863, 875
ApoI	RAATTY	1 cut(s)	280
AsiSI	GCGATCGC	1 cut(s)	276
AspLEI	GCGC	1 cut(s)	129
AspS9I	GGNCC	5 cut(s)	20, 25, 251, 505, 831
AsuHPI	GGTGA	3 cut(s)	97, 749, 797
AvaII	GGWCC	3 cut(s)	20, 25, 505
BamHI	GGATCC	2 cut(s)	301, 718
BarI	GAAGNNNNNNTAC	2 cut(s)	738, 770
BbsI	GAAGAC	3 cut(s)	133, 343, 746
BbvCI	CCTCAGC	1 cut(s)	785
BbvI	GCAGC	5 cut(s)	17, 26, 177, 465, 850
BccI	CCATC	1 cut(s)	778
BceAI	ACGGC	3 cut(s)	104, 206, 293
BciT130I	CCWGG	2 cut(s)	71, 218
BcoDI	GTCTC	2 cut(s)	466, 612
BfaI	CTAG	2 cut(s)	731, 860
BglI	GCCNNNNNGGC	2 cut(s)	71, 839
BisI	GCNGC	8 cut(s)	6, 15, 166, 204, 479, 482, 864, 876
BlsI	GCNGC	8 cut(s)	7, 16, 167, 205, 480, 483, 865, 877
Bme1390I	CCNGG	2 cut(s)	71, 218
Bme18I	GGWCC	3 cut(s)	20, 25, 505
BmgT120I	GGNCC	5 cut(s)	20, 25, 251, 505, 831
BmiI	GGNNCC	5 cut(s)	64, 253, 303, 559, 720
BmrFI	CCNGG	2 cut(s)	71, 218
BmsI	GCATC	1 cut(s)	700
BpiI	GAAGAC	3 cut(s)	133, 343, 746
BpmI	CTGGAG	1 cut(s)	200
Bpu10I	CCTNAGC	1 cut(s)	785
BsaHI	GRCGYC	1 cut(s)	195
BsaJI	CCNNGG	4 cut(s)	160, 714, 760, 834
BsaWI	WCCGGW	1 cut(s)	22
BsaXI	ACNNNNNCTCC	2 cut(s)	59, 89
Bsc4I	CCNNNNNNNGG	1 cut(s)	311
Bse1I	ACTGG	1 cut(s)	790
Bse3DI	GCAATG	1 cut(s)	534
BseBI	CCWGG	2 cut(s)	71, 218
BseDI	CCNNGG	4 cut(s)	160, 714, 760, 834
BseGI	GGATG	1 cut(s)	715
BseLI	CCNNNNNNNGG	1 cut(s)	311
BseMI	GCAATG	1 cut(s)	534
BseMII	CTCAG	5 cut(s)	320, 459, 591, 623, 799
BseNI	ACTGG	1 cut(s)	790
BseRI	GAGGAG	2 cut(s)	201, 221
BseX3I	CGGCCG	1 cut(s)	306
BseXI	GCAGC	5 cut(s)	17, 26, 177, 465, 850
BseYI	CCCAGC	1 cut(s)	341
Bsh1236I	CGCG	2 cut(s)	129, 278
Bsh1285I	CGRYCG	2 cut(s)	276, 309
BshFI	GGCC	5 cut(s)	74, 221, 252, 308, 833
BsiEI	CGRYCG	2 cut(s)	276, 309
BsiSI	CCGG	4 cut(s)	23, 249, 305, 399
BslFI	GGGAC	1 cut(s)	358
BslI	CCNNNNNNNGG	1 cut(s)	311
BsmAI	GTCTC	2 cut(s)	466, 612
BsmFI	GGGAC	1 cut(s)	358
BsmI	GAATGC	1 cut(s)	424
BsnI	GGCC	5 cut(s)	74, 221, 252, 308, 833
Bsp143I	GATC	6 cut(s)	189, 273, 301, 624, 718, 811
Bsp68I	TCGCGA	1 cut(s)	278
BspACI	CCGC	6 cut(s)	43, 145, 201, 204, 299, 481
BspANI	GGCC	5 cut(s)	74, 221, 252, 308, 833
BspCNI	CTCAG	5 cut(s)	321, 460, 592, 622, 798
BspFNI	CGCG	2 cut(s)	129, 278
BspLI	GGNNCC	5 cut(s)	64, 253, 303, 559, 720
BspPI	GGATC	5 cut(s)	296, 309, 619, 713, 726
BspQI	GCTCTTC	1 cut(s)	873
BsrBI	CCGCTC	1 cut(s)	147
BsrDI	GCAATG	1 cut(s)	534
BsrI	ACTGG	1 cut(s)	790
BssECI	CCNNGG	4 cut(s)	160, 714, 760, 834
BssMI	GATC	6 cut(s)	189, 273, 301, 624, 718, 811
BssNI	GRCGYC	1 cut(s)	195
BssT1I	CCWWGG	3 cut(s)	714, 760, 834
Bst2UI	CCWGG	2 cut(s)	71, 218
Bst4CI	ACNGT	1 cut(s)	349
Bst6I	CTCTTC	2 cut(s)	38, 873
BstACI	GRCGYC	1 cut(s)	195
BstDEI	CTNAG	5 cut(s)	329, 468, 600, 609, 785
BstEII	GGTNACC	1 cut(s)	803
BstF5I	GGATG	1 cut(s)	715
BstFNI	CGCG	2 cut(s)	129, 278
BstHHI	GCGC	1 cut(s)	129
BstKTI	GATC	6 cut(s)	192, 276, 304, 627, 721, 814
BstMAI	GTCTC	2 cut(s)	466, 612
BstMBI	GATC	6 cut(s)	189, 273, 301, 624, 718, 811
BstMCI	CGRYCG	2 cut(s)	276, 309
BstMWI	GCNNNNNNNGC	8 cut(s)	11, 14, 71, 203, 305, 487, 839, 872
BstNI	CCWGG	2 cut(s)	71, 218
BstPI	GGTNACC	1 cut(s)	803
BstSCI	CCNGG	2 cut(s)	69, 216
BstUI	CGCG	2 cut(s)	129, 278
BstV1I	GCAGC	5 cut(s)	17, 26, 177, 465, 850
BstV2I	GAAGAC	3 cut(s)	133, 343, 746
BstX2I	RGATCY	2 cut(s)	301, 718
BstYI	RGATCY	2 cut(s)	301, 718
BstZI	CGGCCG	1 cut(s)	306
BsuRI	GGCC	5 cut(s)	74, 221, 252, 308, 833
BtgZI	GCGATG	1 cut(s)	139
BtsCI	GGATG	1 cut(s)	715
BtsI	GCAGTG	3 cut(s)	15, 555, 698
BtsIMutI	CAGTG	3 cut(s)	15, 555, 698
BtuMI	TCGCGA	1 cut(s)	278
CfoI	GCGC	1 cut(s)	129
Cfr13I	GGNCC	5 cut(s)	20, 25, 251, 505, 831
CseI	GACGC	1 cut(s)	203
CviAII	CATG	4 cut(s)	355, 359, 487, 534
DdeI	CTNAG	5 cut(s)	329, 468, 600, 609, 785
DpnI	GATC	6 cut(s)	191, 275, 303, 626, 720, 813
DpnII	GATC	6 cut(s)	189, 273, 301, 624, 718, 811
DrdI	GACNNNNNNGTC	2 cut(s)	119, 137
DseDI	GACNNNNNNGTC	2 cut(s)	119, 137
EaeI	YGGCCR	1 cut(s)	306
EagI	CGGCCG	1 cut(s)	306
Eam1104I	CTCTTC	2 cut(s)	38, 873
EarI	CTCTTC	2 cut(s)	38, 873
EciI	GGCGGA	2 cut(s)	190, 314
EclXI	CGGCCG	1 cut(s)	306
Eco130I	CCWWGG	3 cut(s)	714, 760, 834
Eco147I	AGGCCT	1 cut(s)	74
Eco47I	GGWCC	3 cut(s)	20, 25, 505
Eco52I	CGGCCG	1 cut(s)	306
Eco91I	GGTNACC	1 cut(s)	803
EcoO65I	GGTNACC	1 cut(s)	803
EcoRII	CCWGG	2 cut(s)	69, 216
EcoT14I	CCWWGG	3 cut(s)	714, 760, 834
EcoT22I	ATGCAT	4 cut(s)	360, 424, 453, 657
ErhI	CCWWGG	3 cut(s)	714, 760, 834
FaeI	CATG	4 cut(s)	358, 362, 490, 537
FaqI	GGGAC	1 cut(s)	358
FatI	CATG	4 cut(s)	354, 358, 486, 533
FauNDI	CATATG	1 cut(s)	657
FblI	GTMKAC	1 cut(s)	498
Fnu4HI	GCNGC	8 cut(s)	6, 15, 166, 204, 479, 482, 864, 876
FokI	GGATG	1 cut(s)	722
Fsp4HI	GCNGC	8 cut(s)	6, 15, 166, 204, 479, 482, 864, 876
FspBI	CTAG	2 cut(s)	731, 860
GlaI	GCGC	1 cut(s)	128
GluI	GCNGC	8 cut(s)	6, 15, 166, 204, 479, 482, 864, 876
GsaI	CCCAGC	1 cut(s)	345
GsuI	CTGGAG	1 cut(s)	200
HaeIII	GGCC	5 cut(s)	74, 221, 252, 308, 833
HapII	CCGG	4 cut(s)	23, 249, 305, 399
HgaI	GACGC	1 cut(s)	203
HhaI	GCGC	1 cut(s)	129
Hin1I	GRCGYC	1 cut(s)	195
Hin1II	CATG	4 cut(s)	358, 362, 490, 537
Hin6I	GCGC	1 cut(s)	127
HinP1I	GCGC	1 cut(s)	127
HincII	GTYRAC	1 cut(s)	499
HindII	GTYRAC	1 cut(s)	499
HinfI	GANTC	1 cut(s)	266
HpaII	CCGG	4 cut(s)	23, 249, 305, 399
HphI	GGTGA	3 cut(s)	97, 749, 797
Hpy166II	GTNNAC	1 cut(s)	499
Hpy188I	TCNGA	4 cut(s)	314, 330, 460, 601
Hpy188III	TCNNGA	4 cut(s)	277, 433, 692, 722
Hpy8I	GTNNAC	1 cut(s)	499
Hpy99I	CGWCG	5 cut(s)	116, 125, 197, 314, 503
HpyAV	CCTTC	1 cut(s)	280
HpyCH4III	ACNGT	1 cut(s)	349
HpyCH4V	TGCA	7 cut(s)	358, 422, 451, 490, 527, 655, 703
HpyF10VI	GCNNNNNNNGC	8 cut(s)	11, 14, 71, 203, 305, 487, 839, 872
HpyF3I	CTNAG	5 cut(s)	329, 468, 600, 609, 785
Hsp92I	GRCGYC	1 cut(s)	195
Hsp92II	CATG	4 cut(s)	358, 362, 490, 537
HspAI	GCGC	1 cut(s)	127
Kzo9I	GATC	6 cut(s)	189, 273, 301, 624, 718, 811
LguI	GCTCTTC	1 cut(s)	873
LmnI	GCTCC	2 cut(s)	62, 234
Lsp1109I	GCAGC	5 cut(s)	17, 26, 177, 465, 850
LweI	GCATC	1 cut(s)	700
MaeI	CTAG	2 cut(s)	731, 860
MaeIII	GTNAC	2 cut(s)	613, 803
MalI	GATC	6 cut(s)	191, 275, 303, 626, 720, 813
MbiI	CCGCTC	1 cut(s)	147
MboI	GATC	6 cut(s)	189, 273, 301, 624, 718, 811
MboII	GAAGA	6 cut(s)	25, 133, 343, 746, 765, 860
MflI	RGATCY	2 cut(s)	301, 718
MluCI	AATT	2 cut(s)	280, 798
MmeI	TCCRAC	1 cut(s)	292
Mph1103I	ATGCAT	4 cut(s)	360, 424, 453, 657
MseI	TTAA	4 cut(s)	81, 444, 539, 855
MspA1I	CMGCKG	2 cut(s)	478, 878
MspI	CCGG	4 cut(s)	23, 249, 305, 399
MspR9I	CCNGG	2 cut(s)	71, 218
Mva1269I	GAATGC	1 cut(s)	424
MvaI	CCWGG	2 cut(s)	71, 218
MvnI	CGCG	2 cut(s)	129, 278
MwoI	GCNNNNNNNGC	8 cut(s)	11, 14, 71, 203, 305, 487, 839, 872
NdeI	CATATG	1 cut(s)	657
NdeII	GATC	6 cut(s)	189, 273, 301, 624, 718, 811
NlaIII	CATG	4 cut(s)	358, 362, 490, 537
NlaIV	GGNNCC	5 cut(s)	64, 253, 303, 559, 720
NmeAIII	GCCGAG	1 cut(s)	141
NmuCI	GTSAC	1 cut(s)	803
NruI	TCGCGA	1 cut(s)	278
NsiI	ATGCAT	4 cut(s)	360, 424, 453, 657
PceI	AGGCCT	1 cut(s)	74
PciSI	GCTCTTC	1 cut(s)	873
PcsI	WCGNNNNNNNCGW	3 cut(s)	120, 183, 275
PctI	GAATGC	1 cut(s)	424
PfeI	GAWTC	1 cut(s)	266
PkrI	GCNGC	8 cut(s)	7, 16, 167, 205, 480, 483, 865, 877
Ple19I	CGATCG	1 cut(s)	276
Psp6I	CCWGG	2 cut(s)	69, 216
PspEI	GGTNACC	1 cut(s)	803
PspFI	CCCAGC	1 cut(s)	341
PspGI	CCWGG	2 cut(s)	69, 216
PspN4I	GGNNCC	5 cut(s)	64, 253, 303, 559, 720
PspPI	GGNCC	5 cut(s)	20, 25, 251, 505, 831
PsuI	RGATCY	2 cut(s)	301, 718
PvuI	CGATCG	1 cut(s)	276
PvuII	CAGCTG	2 cut(s)	478, 878
RgaI	GCGATCGC	1 cut(s)	276
RruI	TCGCGA	1 cut(s)	278
SalI	GTCGAC	1 cut(s)	497
SapI	GCTCTTC	1 cut(s)	873
SaqAI	TTAA	4 cut(s)	81, 444, 539, 855
SatI	GCNGC	8 cut(s)	6, 15, 166, 204, 479, 482, 864, 876
Sau3AI	GATC	6 cut(s)	189, 273, 301, 624, 718, 811
Sau96I	GGNCC	5 cut(s)	20, 25, 251, 505, 831
ScrFI	CCNGG	2 cut(s)	71, 218
SfaAI	GCGATCGC	1 cut(s)	276
SfaNI	GCATC	1 cut(s)	700
SgfI	GCGATCGC	1 cut(s)	276
SinI	GGWCC	3 cut(s)	20, 25, 505
Sse9I	AATT	2 cut(s)	280, 798
SseBI	AGGCCT	1 cut(s)	74
SsiI	CCGC	6 cut(s)	43, 145, 201, 204, 299, 481
SspMI	CTAG	2 cut(s)	731, 860
StuI	AGGCCT	1 cut(s)	74
StyD4I	CCNGG	2 cut(s)	69, 216
StyI	CCWWGG	3 cut(s)	714, 760, 834
TaaI	ACNGT	1 cut(s)	349
TaqI	TCGA	3 cut(s)	123, 192, 498
TasI	AATT	2 cut(s)	280, 798
TauI	GCSGC	2 cut(s)	206, 484
TfiI	GAWTC	1 cut(s)	266
Tru1I	TTAA	4 cut(s)	81, 444, 539, 855
Tru9I	TTAA	4 cut(s)	81, 444, 539, 855
TscAI	CASTG	3 cut(s)	15, 555, 705
TseFI	GTSAC	1 cut(s)	803
TseI	GCWGC	6 cut(s)	5, 14, 165, 478, 863, 875
Tsp45I	GTSAC	1 cut(s)	803
TspDTI	ATGAA	3 cut(s)	343, 390, 687
TspRI	CASTG	3 cut(s)	15, 555, 705
VpaK11BI	GGWCC	3 cut(s)	20, 25, 505
XapI	RAATTY	1 cut(s)	280
XcmI	CCANNNNNNNNNTGG	1 cut(s)	797
XmiI	GTMKAC	1 cut(s)	498
XspI	CTAG	2 cut(s)	731, 860
Zsp2I	ATGCAT	4 cut(s)	360, 424, 453, 657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.