Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0012024

Physical Location & Seq

Genomic Coordinates Reverse (-)

13616849 .. 13618961

Gene Structure 2113 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G011780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGCAGCACTAGCAGCAGGACCGGACCACCTCTTCAACCTCCGCAACAGCTTCTACTTGGGGGCCTACCAGGCCGCCATTAACACCAGCGACATCCCCAACCTCTCGCCGGACGAAGCCGTCGAGCGCGACTGCCTCGTTTTCCGATCCTACATAGCCCTCGGTAGCTACCAGCTCGTCATCAACGAGATCGACTCCTCCGCCGCCACGCCTCTCCAGGCCGTCAAGCTCCTCGCCCTCTACCTCTCCGGCCCCGATTACAAGGAATCGGCGATCTCGAATCTAAAGGAGTTGCTGGCGGATCCGGCGATCGGGAACAACTCGACTCTGAGGATGATCGCCGGGACTGTATTTATGCATGAGCAGGACTACAATGAAGCTCTCAAGTACACCCATGCTTCTGGAGGCAATTTGGAACTGGATGCACTGAATGTCCAAATATTCCTCAAAATGCATAGGTCTGATTATGCTGAAAGACGGCTGAAGGAAATGCAAAAGATTGACGAGGACCACACCCTAACTCAACTTGCAACAGCATGGCAAAATCTGGCAGTGGGTGGTTCTAAGATACAGGAGGCATATCTTATCTTCCAAGATTTCTCTGAAAAGTCTCAGGTCACAAGCTTGATTTTGAATGGAAAGGCTGTTTGCTGCATACACATGGGAAACTTTGATGAAGCTGAAACACTGCTTCTTGAAGCACTGAACAAGGATGCAAAGGATCCAGAAACTCTAGCCAACCTTGTCGTATGCTGTCTTCACCTTGGAAAACCACCTTCTCGTTTTCTCAGCCAATTAAGACTCGCACATCCAGACCACGTCCTCGTCAAACGTGCCTCAGCAGCAGAAGAGAGCTTTGACAGAGCTGTTCAATCAGTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005798 GO:0005829 GO:0006810 GO:0006888 GO:0006890 GO:0006891 GO:0008150 GO:0012505 GO:0012506 GO:0016020 GO:0016192 GO:0030117 GO:0030120 GO:0030126 GO:0030135 GO:0030137 GO:0030659 GO:0030660 GO:0030662 GO:0030663 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Coatomer_E

Protein Analysis

294

Amino Acids

32.38

Weight (kDa)

5.18

Isoelectric Point (pI)

37.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Coatomer_E	PF04733	8 - 293	2.1e-131	Coatomer epsilon subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30630 AT2G34840 AT2G34840
fragaria_vesca	FvH4_3g11400 FvH4_3g11400
malus_domestica	MD05G1263700.v1.1 MD10G1241400.v1.1
prunus_persica	Prupe.4G101800_v2.0.a1
pyrus_communis	pycom05g24770 pycom10g20240
rosa_chinensis	RchiOBHm_Chr5g0018341
rosa_laevigata	RLG00000032353
rosa_multiflora	Rmu_sc0004464.1_g000001
rosa_roxburghii	Rroxscaffold_1G00059400
rosa_rugosa	Rorug05G0041600
rosa_samantha	Rh5BG133500 Rh5CG145300 Rh5DG134900
rosa_wichuraiana	Rw5G011780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	119
AccII	CGCG	1 cut(s)	129
AciI	CCGC	5 cut(s)	43, 75, 201, 204, 299
AclWI	GGATC	5 cut(s)	141, 296, 309, 716, 729
AcuI	CTGAAG	1 cut(s)	503
AfaI	GTAC	1 cut(s)	389
AfiI	CCNNNNNNNGG	2 cut(s)	109, 311
AgsI	TTSAA	4 cut(s)	37, 634, 698, 872
AjiI	CACGTC	1 cut(s)	820
AjnI	CCWGG	2 cut(s)	69, 216
AluBI	AGCT	9 cut(s)	51, 168, 175, 229, 380, 624, 680, 855, 866
AluI	AGCT	9 cut(s)	51, 168, 175, 229, 380, 624, 680, 855, 866
Alw26I	GTCTC	1 cut(s)	615
AlwI	GGATC	5 cut(s)	141, 296, 309, 716, 729
AoxI	GGCC	4 cut(s)	63, 72, 219, 250
ApeKI	GCWGC	4 cut(s)	5, 14, 651, 842
AspLEI	GCGC	1 cut(s)	129
AspS9I	GGNCC	5 cut(s)	20, 25, 63, 251, 508
AsuC2I	CCSGG	1 cut(s)	343
AsuHPI	GGTGA	1 cut(s)	752
AvaII	GGWCC	3 cut(s)	20, 25, 508
BamHI	GGATCC	2 cut(s)	301, 721
BarI	GAAGNNNNNNTAC	2 cut(s)	741, 773
BbsI	GAAGAC	1 cut(s)	749
BbvCI	CCTCAGC	1 cut(s)	838
BbvI	GCAGC	4 cut(s)	17, 26, 638, 854
BceAI	ACGGC	3 cut(s)	104, 206, 494
BciT130I	CCWGG	2 cut(s)	71, 218
BcnI	CCSGG	1 cut(s)	343
BcoDI	GTCTC	1 cut(s)	615
BfaI	CTAG	2 cut(s)	11, 734
BglI	GCCNNNNNGGC	1 cut(s)	71
BisI	GCNGC	6 cut(s)	6, 15, 75, 204, 652, 843
BlsI	GCNGC	6 cut(s)	7, 16, 76, 205, 653, 844
Bme1390I	CCNGG	3 cut(s)	71, 218, 343
Bme18I	GGWCC	3 cut(s)	20, 25, 508
BmgBI	CACGTC	1 cut(s)	820
BmgT120I	GGNCC	5 cut(s)	20, 25, 63, 251, 508
BmiI	GGNNCC	4 cut(s)	64, 253, 303, 723
BmrFI	CCNGG	3 cut(s)	71, 218, 343
BmsI	GCATC	2 cut(s)	412, 703
BpiI	GAAGAC	1 cut(s)	749
BplI	GAGNNNNNCTC	2 cut(s)	179, 211
BpmI	CTGGAG	2 cut(s)	200, 423
Bpu10I	CCTNAGC	1 cut(s)	838
BpuEI	CTTGAG	1 cut(s)	368
BpuMI	CCSGG	1 cut(s)	343
BsaJI	CCNNGG	2 cut(s)	160, 763
BsaWI	WCCGGW	1 cut(s)	22
Bsc4I	CCNNNNNNNGG	2 cut(s)	109, 311
Bse1I	ACTGG	1 cut(s)	423
BseBI	CCWGG	2 cut(s)	71, 218
BseDI	CCNNGG	2 cut(s)	160, 763
BseGI	GGATG	5 cut(s)	93, 339, 427, 718, 808
BseLI	CCNNNNNNNGG	2 cut(s)	109, 311
BseMII	CTCAG	4 cut(s)	320, 626, 802, 852
BseNI	ACTGG	1 cut(s)	423
BseRI	GAGGAG	2 cut(s)	187, 221
BseXI	GCAGC	4 cut(s)	17, 26, 638, 854
Bsh1236I	CGCG	1 cut(s)	129
Bsh1285I	CGRYCG	1 cut(s)	312
BshFI	GGCC	4 cut(s)	65, 74, 221, 252
BsiEI	CGRYCG	1 cut(s)	312
BsiSI	CCGG	5 cut(s)	23, 110, 249, 305, 342
BslFI	GGGAC	1 cut(s)	358
BslI	CCNNNNNNNGG	2 cut(s)	109, 311
BsmAI	GTCTC	1 cut(s)	615
BsmFI	GGGAC	1 cut(s)	358
BsnI	GGCC	4 cut(s)	65, 74, 221, 252
Bsp143I	GATC	7 cut(s)	146, 189, 273, 301, 309, 336, 721
BspACI	CCGC	5 cut(s)	43, 75, 201, 204, 299
BspANI	GGCC	4 cut(s)	65, 74, 221, 252
BspCNI	CTCAG	4 cut(s)	321, 625, 801, 851
BspFNI	CGCG	1 cut(s)	129
BspLI	GGNNCC	4 cut(s)	64, 253, 303, 723
BspPI	GGATC	5 cut(s)	141, 296, 309, 716, 729
BsrI	ACTGG	1 cut(s)	423
BssECI	CCNNGG	2 cut(s)	160, 763
BssMI	GATC	7 cut(s)	146, 189, 273, 301, 309, 336, 721
BssT1I	CCWWGG	1 cut(s)	763
Bst2UI	CCWGG	2 cut(s)	71, 218
Bst4CI	ACNGT	1 cut(s)	349
Bst6I	CTCTTC	2 cut(s)	38, 843
BstC8I	GCNNGC	1 cut(s)	297
BstDEI	CTNAG	5 cut(s)	329, 564, 612, 788, 838
BstF5I	GGATG	5 cut(s)	93, 339, 427, 718, 808
BstFNI	CGCG	1 cut(s)	129
BstHHI	GCGC	1 cut(s)	129
BstKTI	GATC	7 cut(s)	149, 192, 276, 304, 312, 339, 724
BstMAI	GTCTC	1 cut(s)	615
BstMBI	GATC	7 cut(s)	146, 189, 273, 301, 309, 336, 721
BstMCI	CGRYCG	1 cut(s)	312
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 14, 71, 305, 842
BstNI	CCWGG	2 cut(s)	71, 218
BstSCI	CCNGG	3 cut(s)	69, 216, 341
BstUI	CGCG	1 cut(s)	129
BstV1I	GCAGC	4 cut(s)	17, 26, 638, 854
BstV2I	GAAGAC	1 cut(s)	749
BstX2I	RGATCY	2 cut(s)	301, 721
BstXI	CCANNNNNNTGG	1 cut(s)	401
BstYI	RGATCY	2 cut(s)	301, 721
BsuRI	GGCC	4 cut(s)	65, 74, 221, 252
BtrI	CACGTC	1 cut(s)	820
BtsCI	GGATG	5 cut(s)	93, 339, 427, 718, 808
BtsI	GCAGTG	2 cut(s)	558, 686
BtsIMutI	CAGTG	4 cut(s)	425, 558, 686, 701
Cac8I	GCNNGC	1 cut(s)	297
CfoI	GCGC	1 cut(s)	129
Cfr13I	GGNCC	5 cut(s)	20, 25, 63, 251, 508
Csp6I	GTAC	1 cut(s)	388
CviAII	CATG	4 cut(s)	359, 395, 537, 661
CviQI	GTAC	1 cut(s)	388
DdeI	CTNAG	5 cut(s)	329, 564, 612, 788, 838
DpnI	GATC	7 cut(s)	148, 191, 275, 303, 311, 338, 723
DpnII	GATC	7 cut(s)	146, 189, 273, 301, 309, 336, 721
DrdI	GACNNNNNNGTC	1 cut(s)	119
DseDI	GACNNNNNNGTC	1 cut(s)	119
Eam1104I	CTCTTC	2 cut(s)	38, 843
EarI	CTCTTC	2 cut(s)	38, 843
EciI	GGCGGA	2 cut(s)	190, 314
Eco130I	CCWWGG	1 cut(s)	763
Eco47I	GGWCC	3 cut(s)	20, 25, 508
Eco57I	CTGAAG	1 cut(s)	503
EcoO109I	RGGNCCY	1 cut(s)	63
EcoRII	CCWGG	2 cut(s)	69, 216
EcoT14I	CCWWGG	1 cut(s)	763
EcoT22I	ATGCAT	2 cut(s)	360, 456
ErhI	CCWWGG	1 cut(s)	763
FaeI	CATG	4 cut(s)	362, 398, 540, 664
FaqI	GGGAC	1 cut(s)	358
FatI	CATG	4 cut(s)	358, 394, 536, 660
Fnu4HI	GCNGC	6 cut(s)	6, 15, 75, 204, 652, 843
FokI	GGATG	5 cut(s)	80, 346, 434, 725, 795
Fsp4HI	GCNGC	6 cut(s)	6, 15, 75, 204, 652, 843
FspBI	CTAG	2 cut(s)	11, 734
GlaI	GCGC	1 cut(s)	128
GluI	GCNGC	6 cut(s)	6, 15, 75, 204, 652, 843
GsuI	CTGGAG	2 cut(s)	200, 423
HaeIII	GGCC	4 cut(s)	65, 74, 221, 252
HapII	CCGG	5 cut(s)	23, 110, 249, 305, 342
HhaI	GCGC	1 cut(s)	129
Hin1II	CATG	4 cut(s)	362, 398, 540, 664
Hin6I	GCGC	1 cut(s)	127
HinP1I	GCGC	1 cut(s)	127
HindIII	AAGCTT	1 cut(s)	622
HinfI	GANTC	5 cut(s)	194, 266, 280, 325, 801
HpaII	CCGG	5 cut(s)	23, 110, 249, 305, 342
HphI	GGTGA	1 cut(s)	752
Hpy166II	GTNNAC	1 cut(s)	390
Hpy188I	TCNGA	4 cut(s)	146, 330, 463, 604
Hpy188III	TCNNGA	6 cut(s)	277, 313, 402, 695, 725, 812
Hpy8I	GTNNAC	1 cut(s)	390
Hpy99I	CGWCG	1 cut(s)	125
HpyAV	CCTTC	2 cut(s)	478, 786
HpyCH4III	ACNGT	1 cut(s)	349
HpyCH4IV	ACGT	2 cut(s)	819, 832
HpyCH4V	TGCA	7 cut(s)	358, 425, 454, 493, 530, 654, 716
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 14, 71, 305, 842
HpyF3I	CTNAG	5 cut(s)	329, 564, 612, 788, 838
HpySE526I	ACGT	2 cut(s)	819, 832
Hsp92II	CATG	4 cut(s)	362, 398, 540, 664
HspAI	GCGC	1 cut(s)	127
Kzo9I	GATC	7 cut(s)	146, 189, 273, 301, 309, 336, 721
LmnI	GCTCC	1 cut(s)	234
Lsp1109I	GCAGC	4 cut(s)	17, 26, 638, 854
LweI	GCATC	2 cut(s)	412, 703
MaeI	CTAG	2 cut(s)	11, 734
MaeII	ACGT	2 cut(s)	819, 832
MaeIII	GTNAC	1 cut(s)	616
MalI	GATC	7 cut(s)	148, 191, 275, 303, 311, 338, 723
MboI	GATC	7 cut(s)	146, 189, 273, 301, 309, 336, 721
MboII	GAAGA	4 cut(s)	25, 580, 749, 860
MflI	RGATCY	2 cut(s)	301, 721
MluCI	AATT	2 cut(s)	409, 794
MlyI	GAGTC	3 cut(s)	188, 319, 795
Mph1103I	ATGCAT	2 cut(s)	360, 456
MseI	TTAA	2 cut(s)	81, 797
MslI	CAYNNNNRTG	1 cut(s)	659
MspI	CCGG	5 cut(s)	23, 110, 249, 305, 342
MspR9I	CCNGG	3 cut(s)	71, 218, 343
MvaI	CCWGG	2 cut(s)	71, 218
MvnI	CGCG	1 cut(s)	129
MwoI	GCNNNNNNNGC	5 cut(s)	11, 14, 71, 305, 842
NciI	CCSGG	1 cut(s)	343
NdeII	GATC	7 cut(s)	146, 189, 273, 301, 309, 336, 721
NlaIII	CATG	4 cut(s)	362, 398, 540, 664
NlaIV	GGNNCC	4 cut(s)	64, 253, 303, 723
NmuCI	GTSAC	1 cut(s)	616
NsiI	ATGCAT	2 cut(s)	360, 456
PcsI	WCGNNNNNNNCGW	3 cut(s)	120, 183, 275
PfeI	GAWTC	2 cut(s)	266, 280
PflFI	GACNNNGTC	1 cut(s)	818
PkrI	GCNGC	6 cut(s)	7, 16, 76, 205, 653, 844
Ple19I	CGATCG	1 cut(s)	312
PleI	GAGTC	3 cut(s)	188, 319, 795
PpsI	GAGTC	3 cut(s)	188, 319, 795
Psp6I	CCWGG	2 cut(s)	69, 216
PspGI	CCWGG	2 cut(s)	69, 216
PspN4I	GGNNCC	4 cut(s)	64, 253, 303, 723
PspPI	GGNCC	5 cut(s)	20, 25, 63, 251, 508
PsuI	RGATCY	2 cut(s)	301, 721
PsyI	GACNNNGTC	1 cut(s)	818
PvuI	CGATCG	1 cut(s)	312
RsaI	GTAC	1 cut(s)	389
RsaNI	GTAC	1 cut(s)	388
RseI	CAYNNNNRTG	1 cut(s)	659
SaqAI	TTAA	2 cut(s)	81, 797
SatI	GCNGC	6 cut(s)	6, 15, 75, 204, 652, 843
Sau3AI	GATC	7 cut(s)	146, 189, 273, 301, 309, 336, 721
Sau96I	GGNCC	5 cut(s)	20, 25, 63, 251, 508
SchI	GAGTC	3 cut(s)	188, 319, 795
ScrFI	CCNGG	3 cut(s)	71, 218, 343
SfaNI	GCATC	2 cut(s)	412, 703
SfiI	GGCCNNNNNGGCC	1 cut(s)	71
SinI	GGWCC	3 cut(s)	20, 25, 508
SmiMI	CAYNNNNRTG	1 cut(s)	659
SmlI	CTYRAG	1 cut(s)	383
SmoI	CTYRAG	1 cut(s)	383
Sse9I	AATT	2 cut(s)	409, 794
SsiI	CCGC	5 cut(s)	43, 75, 201, 204, 299
SspI	AATATT	1 cut(s)	441
SspMI	CTAG	2 cut(s)	11, 734
StyD4I	CCNGG	3 cut(s)	69, 216, 341
StyI	CCWWGG	1 cut(s)	763
TaaI	ACNGT	1 cut(s)	349
TaiI	ACGT	2 cut(s)	822, 835
TaqI	TCGA	4 cut(s)	123, 192, 278, 323
TasI	AATT	2 cut(s)	409, 794
TatI	WGTACW	1 cut(s)	387
TauI	GCSGC	2 cut(s)	77, 206
TfiI	GAWTC	2 cut(s)	266, 280
Tru1I	TTAA	2 cut(s)	81, 797
Tru9I	TTAA	2 cut(s)	81, 797
TscAI	CASTG	4 cut(s)	432, 558, 693, 708
TseFI	GTSAC	1 cut(s)	616
TseI	GCWGC	4 cut(s)	5, 14, 651, 842
Tsp45I	GTSAC	1 cut(s)	616
TspDTI	ATGAA	2 cut(s)	390, 690
TspRI	CASTG	4 cut(s)	432, 558, 693, 708
Tth111I	GACNNNGTC	1 cut(s)	818
VpaK11BI	GGWCC	3 cut(s)	20, 25, 508
XspI	CTAG	2 cut(s)	11, 734
Zsp2I	ATGCAT	2 cut(s)	360, 456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.