Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0012024

Physical Location & Seq

Genomic Coordinates Forward (+)

23183262 .. 23185851

Gene Structure 2590 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g20240.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGACCAGCTTGTGTTACGAACTCATAAAATAATTTCTCTTTGGGTTGGCCCAAGTTTGGAATTAATCTTACGCATCATCATAAATCCTTCTAAAGTTTATAATAAACCGGCCCCTCGACAGCATTCGTCCTCCACGCTTTTGTCTCAGATCTGCAACTGTGAGAAACCAAATCGAAATCTCTCAACAATGGCAGCAGTGGCAGCAGTGGCAGCAGGACCGGACCACCTCTTCAACCTCCGCAACAACTTCTACTTGGGAGCCTACCAGGCCTCCATTAACAACAGCGACATTCCCAACCTCTCCCCCGACGAAGCCGTCGAGCGCGACTGCCTCGTCTTCCGCTCTTACATCGCCCTCGGCAGCTACCAGCTCGTCATCAATGAGATCGACGCCTCCGCCGCCACGCCTCTCCAGGCCGTCAAGCTCCTCGCCCTCTACCTCTCTGGCCCCGATTTCAAGGAATCGGCGATCTCGAATTTGAAGGAGTTGTTGGCGGATCCGGCCGTCGGAAACAACCCTACTCTGAGGCTGATTGCTGGGACGGTCTTCATGCATGAGCAGGACTACAATGAAGCTCTCAAATACACCAACGCCGGAGGCACTATGGAACTGAATGCATTGACTATCCAGATATTCCTTAAAATGCATAGGTCAGATTATGCTGAGAGACAGCTGCGGCTCATGCAACAGGTTGACGAGGACCACACACTAACTCAACTTGCAATGGCATGGTTAAGTCTGGCAGTGGGTGGTTCCAAGATACAGGAGGCATATCTCATCTTCCAAGATTTATCTGAGAAGTCTCAGGTTACGAGTTTGATCCTCAATGGAAAGGCTGTTTGCTGTATGCATATGGGAAACTTTGATGAAGCTGAAACACTACTTCTTGAAGCACTGCAAAAGGACGCAAAGGATCCATCAACTCTAGCCAACCTTGTTGTATGCTGTCTTCACCTTGGAAAACCATCTTCTCGTTTCCTCAGCCAGTTGAAAATTGGTCACCCAGATCACTTGCTCGTCAAACGGGTCTTGGAGGCAGAACAGAGCTTTAACCTAGCTGCTCTTCAAGCAGCTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005798 GO:0005829 GO:0006810 GO:0006888 GO:0006890 GO:0006891 GO:0008150 GO:0012505 GO:0012506 GO:0016020 GO:0016192 GO:0030117 GO:0030120 GO:0030126 GO:0030135 GO:0030137 GO:0030659 GO:0030660 GO:0030662 GO:0030663 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Coatomer_E

Protein Analysis

361

Amino Acids

39.63

Weight (kDa)

5.93

Isoelectric Point (pI)

38.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30630 AT2G34840 AT2G34840
fragaria_vesca	FvH4_3g11400 FvH4_3g11400
malus_domestica	MD05G1263700.v1.1 MD10G1241400.v1.1
prunus_persica	Prupe.4G101800_v2.0.a1
pyrus_communis	pycom05g24770 pycom10g20240
rosa_chinensis	RchiOBHm_Chr5g0018341
rosa_laevigata	RLG00000032353
rosa_multiflora	Rmu_sc0004464.1_g000001
rosa_roxburghii	Rroxscaffold_1G00059400
rosa_rugosa	Rorug05G0041600
rosa_samantha	Rh5BG133500 Rh5CG145300 Rh5DG134900
rosa_wichuraiana	Rw5G011780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	102
AasI	GACNNNNNNGTC	2 cut(s)	317, 335
AccBSI	CCGCTC	1 cut(s)	345
AccII	CGCG	1 cut(s)	327
AciI	CCGC	6 cut(s)	241, 343, 399, 402, 497, 679
AclWI	GGATC	5 cut(s)	494, 507, 817, 911, 924
AcoI	YGGCCR	1 cut(s)	504
AcsI	RAATTY	1 cut(s)	478
AcyI	GRCGYC	1 cut(s)	393
AfiI	CCNNNNNNNGG	2 cut(s)	58, 509
AgsI	TTSAA	6 cut(s)	235, 460, 484, 893, 994, 1070
AjnI	CCWGG	2 cut(s)	267, 414
AjuI	GAANNNNNNNTTGG	2 cut(s)	476, 508
Alw26I	GTCTC	3 cut(s)	150, 664, 810
AlwI	GGATC	5 cut(s)	494, 507, 817, 911, 924
AoxI	GGCC	6 cut(s)	49, 111, 270, 417, 448, 504
ApeKI	GCWGC	7 cut(s)	194, 203, 212, 363, 676, 1061, 1073
ApoI	RAATTY	1 cut(s)	478
AseI	ATTAAT	1 cut(s)	65
AspLEI	GCGC	1 cut(s)	327
AspS9I	GGNCC	7 cut(s)	4, 50, 112, 218, 223, 449, 703
AsuHPI	GGTGA	2 cut(s)	947, 995
AvaII	GGWCC	4 cut(s)	4, 218, 223, 703
BamHI	GGATCC	2 cut(s)	499, 916
BarI	GAAGNNNNNNTAC	2 cut(s)	936, 968
BbsI	GAAGAC	3 cut(s)	331, 541, 944
BbvCI	CCTCAGC	1 cut(s)	983
BbvI	GCAGC	6 cut(s)	206, 215, 224, 375, 663, 1048
BccI	CCATC	2 cut(s)	928, 976
BceAI	ACGGC	3 cut(s)	302, 404, 491
BciT130I	CCWGG	2 cut(s)	269, 416
BcoDI	GTCTC	3 cut(s)	150, 664, 810
BfaI	CTAG	2 cut(s)	929, 1058
BglI	GCCNNNNNGGC	1 cut(s)	269
BglII	AGATCT	1 cut(s)	150
BisI	GCNGC	9 cut(s)	195, 204, 213, 364, 402, 677, 680, 1062, 1074
BlsI	GCNGC	9 cut(s)	196, 205, 214, 365, 403, 678, 681, 1063, 1075
Bme1390I	CCNGG	2 cut(s)	269, 416
Bme18I	GGWCC	4 cut(s)	4, 218, 223, 703
BmgT120I	GGNCC	7 cut(s)	4, 50, 112, 218, 223, 449, 703
BmiI	GGNNCC	6 cut(s)	114, 262, 451, 501, 757, 918
BmrFI	CCNGG	2 cut(s)	269, 416
BmsI	GCATC	1 cut(s)	84
BpiI	GAAGAC	3 cut(s)	331, 541, 944
BpmI	CTGGAG	1 cut(s)	398
Bpu10I	CCTNAGC	1 cut(s)	983
BsaHI	GRCGYC	1 cut(s)	393
BsaJI	CCNNGG	2 cut(s)	358, 958
BsaWI	WCCGGW	1 cut(s)	220
BsaXI	ACNNNNNCTCC	2 cut(s)	257, 287
Bsc4I	CCNNNNNNNGG	2 cut(s)	58, 509
Bse118I	RCCGGY	1 cut(s)	109
Bse1I	ACTGG	1 cut(s)	988
Bse3DI	GCAATG	1 cut(s)	732
BseBI	CCWGG	2 cut(s)	269, 416
BseDI	CCNNGG	2 cut(s)	358, 958
BseLI	CCNNNNNNNGG	2 cut(s)	58, 509
BseMI	GCAATG	1 cut(s)	732
BseMII	CTCAG	6 cut(s)	161, 518, 657, 789, 821, 997
BseNI	ACTGG	1 cut(s)	988
BseRI	GAGGAG	1 cut(s)	419
BseX3I	CGGCCG	1 cut(s)	504
BseXI	GCAGC	6 cut(s)	206, 215, 224, 375, 663, 1048
BseYI	CCCAGC	1 cut(s)	539
Bsh1236I	CGCG	1 cut(s)	327
Bsh1285I	CGRYCG	1 cut(s)	507
BshFI	GGCC	6 cut(s)	51, 113, 272, 419, 450, 506
BsiEI	CGRYCG	1 cut(s)	507
BsiSI	CCGG	4 cut(s)	110, 221, 503, 597
BslFI	GGGAC	1 cut(s)	556
BslI	CCNNNNNNNGG	2 cut(s)	58, 509
BsmAI	GTCTC	3 cut(s)	150, 664, 810
BsmFI	GGGAC	1 cut(s)	556
BsmI	GAATGC	2 cut(s)	124, 622
BsnI	GGCC	6 cut(s)	51, 113, 272, 419, 450, 506
Bsp143I	GATC	7 cut(s)	150, 387, 471, 499, 822, 916, 1009
BspACI	CCGC	6 cut(s)	241, 343, 399, 402, 497, 679
BspANI	GGCC	6 cut(s)	51, 113, 272, 419, 450, 506
BspCNI	CTCAG	6 cut(s)	160, 519, 658, 790, 820, 996
BspFNI	CGCG	1 cut(s)	327
BspLI	GGNNCC	6 cut(s)	114, 262, 451, 501, 757, 918
BspPI	GGATC	5 cut(s)	494, 507, 817, 911, 924
BspQI	GCTCTTC	1 cut(s)	1071
BsrBI	CCGCTC	1 cut(s)	345
BsrDI	GCAATG	1 cut(s)	732
BsrFI	RCCGGY	1 cut(s)	109
BsrI	ACTGG	1 cut(s)	988
BssAI	RCCGGY	1 cut(s)	109
BssECI	CCNNGG	2 cut(s)	358, 958
BssMI	GATC	7 cut(s)	150, 387, 471, 499, 822, 916, 1009
BssNI	GRCGYC	1 cut(s)	393
BssT1I	CCWWGG	1 cut(s)	958
Bst2UI	CCWGG	2 cut(s)	269, 416
Bst4CI	ACNGT	2 cut(s)	161, 547
Bst6I	CTCTTC	2 cut(s)	236, 1071
BstACI	GRCGYC	1 cut(s)	393
BstDEI	CTNAG	6 cut(s)	147, 527, 666, 798, 807, 983
BstEII	GGTNACC	1 cut(s)	1001
BstFNI	CGCG	1 cut(s)	327
BstHHI	GCGC	1 cut(s)	327
BstKTI	GATC	7 cut(s)	153, 390, 474, 502, 825, 919, 1012
BstMAI	GTCTC	3 cut(s)	150, 664, 810
BstMBI	GATC	7 cut(s)	150, 387, 471, 499, 822, 916, 1009
BstMCI	CGRYCG	1 cut(s)	507
BstMWI	GCNNNNNNNGC	9 cut(s)	200, 203, 209, 212, 269, 401, 503, 685, 1070
BstNI	CCWGG	2 cut(s)	269, 416
BstPI	GGTNACC	1 cut(s)	1001
BstSCI	CCNGG	2 cut(s)	267, 414
BstUI	CGCG	1 cut(s)	327
BstV1I	GCAGC	6 cut(s)	206, 215, 224, 375, 663, 1048
BstV2I	GAAGAC	3 cut(s)	331, 541, 944
BstX2I	RGATCY	3 cut(s)	150, 499, 916
BstYI	RGATCY	3 cut(s)	150, 499, 916
BstZI	CGGCCG	1 cut(s)	504
BsuRI	GGCC	6 cut(s)	51, 113, 272, 419, 450, 506
BtgZI	GCGATG	1 cut(s)	337
BtsI	GCAGTG	4 cut(s)	204, 213, 753, 896
BtsIMutI	CAGTG	4 cut(s)	204, 213, 753, 896
CfoI	GCGC	1 cut(s)	327
Cfr10I	RCCGGY	1 cut(s)	109
Cfr13I	GGNCC	7 cut(s)	4, 50, 112, 218, 223, 449, 703
CseI	GACGC	2 cut(s)	401, 917
CviAII	CATG	4 cut(s)	553, 557, 685, 732
DdeI	CTNAG	6 cut(s)	147, 527, 666, 798, 807, 983
DpnI	GATC	7 cut(s)	152, 389, 473, 501, 824, 918, 1011
DpnII	GATC	7 cut(s)	150, 387, 471, 499, 822, 916, 1009
DrdI	GACNNNNNNGTC	2 cut(s)	317, 335
DseDI	GACNNNNNNGTC	2 cut(s)	317, 335
EaeI	YGGCCR	1 cut(s)	504
EagI	CGGCCG	1 cut(s)	504
Eam1104I	CTCTTC	2 cut(s)	236, 1071
EarI	CTCTTC	2 cut(s)	236, 1071
EciI	GGCGGA	2 cut(s)	388, 512
EclXI	CGGCCG	1 cut(s)	504
Eco130I	CCWWGG	1 cut(s)	958
Eco147I	AGGCCT	1 cut(s)	272
Eco47I	GGWCC	4 cut(s)	4, 218, 223, 703
Eco52I	CGGCCG	1 cut(s)	504
Eco91I	GGTNACC	1 cut(s)	1001
EcoO65I	GGTNACC	1 cut(s)	1001
EcoRII	CCWGG	2 cut(s)	267, 414
EcoT14I	CCWWGG	1 cut(s)	958
EcoT22I	ATGCAT	4 cut(s)	558, 622, 651, 855
ErhI	CCWWGG	1 cut(s)	958
FaeI	CATG	4 cut(s)	556, 560, 688, 735
FaqI	GGGAC	1 cut(s)	556
FatI	CATG	4 cut(s)	552, 556, 684, 731
FauNDI	CATATG	1 cut(s)	855
Fnu4HI	GCNGC	9 cut(s)	195, 204, 213, 364, 402, 677, 680, 1062, 1074
Fsp4HI	GCNGC	9 cut(s)	195, 204, 213, 364, 402, 677, 680, 1062, 1074
FspBI	CTAG	2 cut(s)	929, 1058
GlaI	GCGC	1 cut(s)	326
GluI	GCNGC	9 cut(s)	195, 204, 213, 364, 402, 677, 680, 1062, 1074
GsaI	CCCAGC	1 cut(s)	543
GsuI	CTGGAG	1 cut(s)	398
HaeIII	GGCC	6 cut(s)	51, 113, 272, 419, 450, 506
HapII	CCGG	4 cut(s)	110, 221, 503, 597
HgaI	GACGC	2 cut(s)	401, 917
HhaI	GCGC	1 cut(s)	327
Hin1I	GRCGYC	1 cut(s)	393
Hin1II	CATG	4 cut(s)	556, 560, 688, 735
Hin6I	GCGC	1 cut(s)	325
HinP1I	GCGC	1 cut(s)	325
HincII	GTYRAC	1 cut(s)	697
HindII	GTYRAC	1 cut(s)	697
HinfI	GANTC	1 cut(s)	464
HpaII	CCGG	4 cut(s)	110, 221, 503, 597
HphI	GGTGA	2 cut(s)	947, 995
Hpy166II	GTNNAC	1 cut(s)	697
Hpy188I	TCNGA	5 cut(s)	150, 512, 528, 658, 799
Hpy188III	TCNNGA	3 cut(s)	475, 631, 890
Hpy8I	GTNNAC	1 cut(s)	697
Hpy99I	CGWCG	4 cut(s)	314, 323, 395, 512
HpyAV	CCTTC	2 cut(s)	99, 478
HpyCH4III	ACNGT	2 cut(s)	161, 547
HpyCH4V	TGCA	8 cut(s)	156, 556, 620, 649, 688, 725, 853, 901
HpyF10VI	GCNNNNNNNGC	9 cut(s)	200, 203, 209, 212, 269, 401, 503, 685, 1070
HpyF3I	CTNAG	6 cut(s)	147, 527, 666, 798, 807, 983
Hsp92I	GRCGYC	1 cut(s)	393
Hsp92II	CATG	4 cut(s)	556, 560, 688, 735
HspAI	GCGC	1 cut(s)	325
Kzo9I	GATC	7 cut(s)	150, 387, 471, 499, 822, 916, 1009
LguI	GCTCTTC	1 cut(s)	1071
LmnI	GCTCC	2 cut(s)	260, 432
Lsp1109I	GCAGC	6 cut(s)	206, 215, 224, 375, 663, 1048
LweI	GCATC	1 cut(s)	84
MaeI	CTAG	2 cut(s)	929, 1058
MaeIII	GTNAC	3 cut(s)	15, 811, 1001
MalI	GATC	7 cut(s)	152, 389, 473, 501, 824, 918, 1011
MbiI	CCGCTC	1 cut(s)	345
MboI	GATC	7 cut(s)	150, 387, 471, 499, 822, 916, 1009
MboII	GAAGA	7 cut(s)	223, 331, 541, 775, 944, 963, 1058
MflI	RGATCY	3 cut(s)	150, 499, 916
MluCI	AATT	4 cut(s)	33, 62, 478, 996
MmeI	TCCRAC	1 cut(s)	490
Mph1103I	ATGCAT	4 cut(s)	558, 622, 651, 855
MseI	TTAA	5 cut(s)	65, 279, 642, 737, 1053
MspA1I	CMGCKG	2 cut(s)	676, 1076
MspI	CCGG	4 cut(s)	110, 221, 503, 597
MspR9I	CCNGG	2 cut(s)	269, 416
Mva1269I	GAATGC	2 cut(s)	124, 622
MvaI	CCWGG	2 cut(s)	269, 416
MvnI	CGCG	1 cut(s)	327
MwoI	GCNNNNNNNGC	9 cut(s)	200, 203, 209, 212, 269, 401, 503, 685, 1070
NdeI	CATATG	1 cut(s)	855
NdeII	GATC	7 cut(s)	150, 387, 471, 499, 822, 916, 1009
NlaIII	CATG	4 cut(s)	556, 560, 688, 735
NlaIV	GGNNCC	6 cut(s)	114, 262, 451, 501, 757, 918
NmeAIII	GCCGAG	1 cut(s)	339
NmuCI	GTSAC	1 cut(s)	1001
NsiI	ATGCAT	4 cut(s)	558, 622, 651, 855
PceI	AGGCCT	1 cut(s)	272
PciSI	GCTCTTC	1 cut(s)	1071
PcsI	WCGNNNNNNNCGW	2 cut(s)	318, 473
PctI	GAATGC	2 cut(s)	124, 622
PfeI	GAWTC	1 cut(s)	464
PkrI	GCNGC	9 cut(s)	196, 205, 214, 365, 403, 678, 681, 1063, 1075
PshBI	ATTAAT	1 cut(s)	65
PsiI	TTATAA	1 cut(s)	102
Psp6I	CCWGG	2 cut(s)	267, 414
PspEI	GGTNACC	1 cut(s)	1001
PspFI	CCCAGC	1 cut(s)	539
PspGI	CCWGG	2 cut(s)	267, 414
PspN4I	GGNNCC	6 cut(s)	114, 262, 451, 501, 757, 918
PspPI	GGNCC	7 cut(s)	4, 50, 112, 218, 223, 449, 703
PsuI	RGATCY	3 cut(s)	150, 499, 916
PvuII	CAGCTG	2 cut(s)	676, 1076
SapI	GCTCTTC	1 cut(s)	1071
SaqAI	TTAA	5 cut(s)	65, 279, 642, 737, 1053
SatI	GCNGC	9 cut(s)	195, 204, 213, 364, 402, 677, 680, 1062, 1074
Sau3AI	GATC	7 cut(s)	150, 387, 471, 499, 822, 916, 1009
Sau96I	GGNCC	7 cut(s)	4, 50, 112, 218, 223, 449, 703
ScrFI	CCNGG	2 cut(s)	269, 416
SfaNI	GCATC	1 cut(s)	84
SinI	GGWCC	4 cut(s)	4, 218, 223, 703
Sse9I	AATT	4 cut(s)	33, 62, 478, 996
SseBI	AGGCCT	1 cut(s)	272
SsiI	CCGC	6 cut(s)	241, 343, 399, 402, 497, 679
SspMI	CTAG	2 cut(s)	929, 1058
StuI	AGGCCT	1 cut(s)	272
StyD4I	CCNGG	2 cut(s)	267, 414
StyI	CCWWGG	1 cut(s)	958
TaaI	ACNGT	2 cut(s)	161, 547
TaqI	TCGA	5 cut(s)	118, 175, 321, 390, 476
TasI	AATT	4 cut(s)	33, 62, 478, 996
TauI	GCSGC	2 cut(s)	404, 682
TfiI	GAWTC	1 cut(s)	464
Tru1I	TTAA	5 cut(s)	65, 279, 642, 737, 1053
Tru9I	TTAA	5 cut(s)	65, 279, 642, 737, 1053
TscAI	CASTG	4 cut(s)	204, 213, 753, 903
TseFI	GTSAC	1 cut(s)	1001
TseI	GCWGC	7 cut(s)	194, 203, 212, 363, 676, 1061, 1073
Tsp45I	GTSAC	1 cut(s)	1001
TspDTI	ATGAA	3 cut(s)	541, 588, 885
TspRI	CASTG	4 cut(s)	204, 213, 753, 903
VpaK11BI	GGWCC	4 cut(s)	4, 218, 223, 703
VspI	ATTAAT	1 cut(s)	65
XapI	RAATTY	1 cut(s)	478
XcmI	CCANNNNNNNNNTGG	1 cut(s)	995
XspI	CTAG	2 cut(s)	929, 1058
Zsp2I	ATGCAT	4 cut(s)	558, 622, 651, 855

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.