Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0012024

Physical Location & Seq

Genomic Coordinates Forward (+)

3578523 .. 3580394

Gene Structure 1872 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0041600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGCAGGGAGTAGCCATGTCTAAGACTCAAACAATGCTTGAGGGCCAATATAAAGCTATGGCAGTTTGTTGGGTTCTTGGACTAGGGACTCTCTTCGCGTGGAACAGTATTGTGACAATAGGAGACTACTATTATAATTTGTTTCCGAAATATCATCCTTCGCGGGTTTTTACCCTTCTTTATCAGCCATTTGCCCTTGCAACATTGGCAGTACTTTCATACAATGACTCAAAAATTGATACAATAAGAAAGAGGATCTTAGTTGGTTACACACTGTTCCTCCTTGGTACCCCTATGCTAATATTCGTAAGTAATGCCCGCATTAGAGCTACATCTGGGACTGGAGGATTTGGATATTTCATCGCTACATGTGCAATTGTTGGTGCATTTGGGGTTGCAGGTGGAAATGTTGAAGGTGCAGTTATGGGTGAACTATCTTTTATGCGTCCTGAATTCATCCAGTCCACATTCATTGAGCTTCTCTGTATACTTTTATATGCAATTTACTTCCCAAGATTGCCTATAGTAAAGTACTACCGCTCAAAGGCAGCCTCAGAAGGCTCTACAACTGTATCCGCTGATCTCGCCACTGCTGGCATTCAGGAACATGCATCAGATATAGAAGTCCATATTGATGCTTACCTACCAAATAGATTGAGCAATAAGCACTTATTTGTGCAAAATATAGATTATGGTCTTGACTTGTTTCTGATATATGCACTGACCTACTCAATCTTCCCCAGTTTCATGTTCGAAAATACTGGAGAACACCAGTTAGGCTCATGGTATCCACTTGTTCTGGTGGCAATGTTCAATATGATGGATTTGATATCAAGATACATACCTGGATGGATGATCATGCTCACATTAGTCCTAGGATTCACAAATGGTTATCTCAGTGTCTGTGTAGTGACAGTGGCACCACGCGGTTACAAGGGACCTGAGCAAAATGCCTTGGGGAACATTCTTGTGCTGTGTCTTTTGTCTGGCATATTTGTGGGGGTTGCCTTGGCTGGTTATGGCTCATTGGTAAAGACACATTTTAAAAGATCCAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005798 GO:0005829 GO:0006810 GO:0006888 GO:0006890 GO:0006891 GO:0008150 GO:0012505 GO:0012506 GO:0016020 GO:0016192 GO:0030117 GO:0030120 GO:0030126 GO:0030135 GO:0030137 GO:0030659 GO:0030660 GO:0030662 GO:0030663 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Coatomer_E

Protein Analysis

352

Amino Acids

38.92

Weight (kDa)

8.46

Isoelectric Point (pI)

29.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30630 AT2G34840 AT2G34840
fragaria_vesca	FvH4_3g11400 FvH4_3g11400
malus_domestica	MD05G1263700.v1.1 MD10G1241400.v1.1
prunus_persica	Prupe.4G101800_v2.0.a1
pyrus_communis	pycom05g24770 pycom10g20240
rosa_chinensis	RchiOBHm_Chr5g0018341
rosa_laevigata	RLG00000032353
rosa_multiflora	Rmu_sc0004464.1_g000001
rosa_roxburghii	Rroxscaffold_1G00059400
rosa_rugosa	Rorug05G0041600
rosa_samantha	Rh5BG133500 Rh5CG145300 Rh5DG134900
rosa_wichuraiana	Rw5G011780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	135
AarI	CACCTGC	1 cut(s)	389
Acc36I	ACCTGC	1 cut(s)	389
Acc65I	GGTACC	1 cut(s)	287
AccB1I	GGYRCC	2 cut(s)	287, 919
AccBSI	CCGCTC	1 cut(s)	540
AccI	GTMKAC	1 cut(s)	487
AccII	CGCG	3 cut(s)	98, 163, 927
AciI	CCGC	5 cut(s)	163, 319, 538, 576, 927
AclWI	GGATC	2 cut(s)	263, 1044
AcsI	RAATTY	1 cut(s)	452
AfaI	GTAC	3 cut(s)	213, 289, 533
AfiI	CCNNNNNNNGG	1 cut(s)	544
AflIII	ACRYGT	1 cut(s)	368
AgsI	TTSAA	2 cut(s)	413, 814
AjnI	CCWGG	1 cut(s)	844
AluBI	AGCT	3 cut(s)	56, 329, 478
AluI	AGCT	3 cut(s)	56, 329, 478
Alw26I	GTCTC	1 cut(s)	117
AlwI	GGATC	2 cut(s)	263, 1044
AlwNI	CAGNNNCTG	1 cut(s)	903
AoxI	GGCC	1 cut(s)	43
ApeKI	GCWGC	1 cut(s)	548
ApoI	RAATTY	1 cut(s)	452
Asp718I	GGTACC	1 cut(s)	287
AspA2I	CCTAGG	1 cut(s)	874
AspS9I	GGNCC	2 cut(s)	43, 938
AsuHPI	GGTGA	1 cut(s)	440
AsuII	TTCGAA	1 cut(s)	753
AvaII	GGWCC	1 cut(s)	938
AvrII	CCTAGG	1 cut(s)	874
BaeI	ACNNNNGTAYC	2 cut(s)	555, 588
BanI	GGYRCC	2 cut(s)	287, 919
BbvI	GCAGC	1 cut(s)	560
BccI	CCATC	2 cut(s)	814, 843
BciT130I	CCWGG	1 cut(s)	846
BciVI	GTATCC	2 cut(s)	583, 798
BclI	TGATCA	1 cut(s)	855
BcoDI	GTCTC	1 cut(s)	117
BfaI	CTAG	3 cut(s)	83, 875, 1057
BfmI	CTRYAG	1 cut(s)	522
BfuAI	ACCTGC	1 cut(s)	389
BfuI	GTATCC	2 cut(s)	583, 798
BisI	GCNGC	1 cut(s)	549
BlnI	CCTAGG	1 cut(s)	874
BlsI	GCNGC	1 cut(s)	550
BmcAI	AGTACT	2 cut(s)	213, 533
Bme1390I	CCNGG	1 cut(s)	846
Bme18I	GGWCC	1 cut(s)	938
BmgT120I	GGNCC	2 cut(s)	43, 938
BmiI	GGNNCC	3 cut(s)	289, 921, 939
BmrFI	CCNGG	1 cut(s)	846
BmrI	ACTGGG	1 cut(s)	735
BmsI	GCATC	2 cut(s)	620, 625
BmuI	ACTGGG	1 cut(s)	735
BpmI	CTGGAG	2 cut(s)	363, 783
Bpu10I	CCTNAGC	1 cut(s)	942
Bpu14I	TTCGAA	1 cut(s)	753
BpuEI	CTTGAG	1 cut(s)	59
BsaJI	CCNNGG	4 cut(s)	283, 874, 954, 1008
BsaXI	ACNNNNNCTCC	2 cut(s)	264, 294
Bsc4I	CCNNNNNNNGG	1 cut(s)	544
Bse1I	ACTGG	5 cut(s)	346, 460, 741, 766, 772
Bse3DI	GCAATG	1 cut(s)	813
BseBI	CCWGG	1 cut(s)	846
BseDI	CCNNGG	4 cut(s)	283, 874, 954, 1008
BseGI	GGATG	4 cut(s)	154, 456, 854, 858
BseLI	CCNNNNNNNGG	1 cut(s)	544
BseMI	GCAATG	1 cut(s)	813
BseMII	CTCAG	3 cut(s)	567, 910, 933
BseNI	ACTGG	5 cut(s)	346, 460, 741, 766, 772
BseXI	GCAGC	1 cut(s)	560
BsgI	GTGCAG	1 cut(s)	438
Bsh1236I	CGCG	3 cut(s)	98, 163, 927
BshFI	GGCC	1 cut(s)	45
BshNI	GGYRCC	2 cut(s)	287, 919
BslFI	GGGAC	3 cut(s)	100, 352, 951
BslI	CCNNNNNNNGG	1 cut(s)	544
BsmAI	GTCTC	1 cut(s)	117
BsmFI	GGGAC	3 cut(s)	100, 352, 951
BsmI	GAATGC	1 cut(s)	597
BsnI	GGCC	1 cut(s)	45
Bsp119I	TTCGAA	1 cut(s)	753
Bsp143I	GATC	4 cut(s)	255, 580, 855, 1049
BspACI	CCGC	5 cut(s)	163, 319, 538, 576, 927
BspANI	GGCC	1 cut(s)	45
BspCNI	CTCAG	3 cut(s)	566, 909, 934
BspFNI	CGCG	3 cut(s)	98, 163, 927
BspLI	GGNNCC	3 cut(s)	289, 921, 939
BspMI	ACCTGC	1 cut(s)	389
BspPI	GGATC	2 cut(s)	263, 1044
BspT104I	TTCGAA	1 cut(s)	753
BspT107I	GGYRCC	2 cut(s)	287, 919
BsrBI	CCGCTC	1 cut(s)	540
BsrDI	GCAATG	1 cut(s)	813
BsrI	ACTGG	5 cut(s)	346, 460, 741, 766, 772
BssECI	CCNNGG	4 cut(s)	283, 874, 954, 1008
BssMI	GATC	4 cut(s)	255, 580, 855, 1049
BssNAI	GTATAC	1 cut(s)	488
BssT1I	CCWWGG	4 cut(s)	283, 874, 954, 1008
Bst1107I	GTATAC	1 cut(s)	488
Bst2UI	CCWGG	1 cut(s)	846
Bst4CI	ACNGT	4 cut(s)	107, 276, 571, 916
Bst6I	CTCTTC	1 cut(s)	98
BstBI	TTCGAA	1 cut(s)	753
BstC8I	GCNNGC	2 cut(s)	319, 595
BstDEI	CTNAG	5 cut(s)	21, 259, 553, 896, 942
BstF5I	GGATG	4 cut(s)	154, 456, 854, 858
BstFNI	CGCG	3 cut(s)	98, 163, 927
BstKTI	GATC	4 cut(s)	258, 583, 858, 1052
BstMAI	GTCTC	1 cut(s)	117
BstMBI	GATC	4 cut(s)	255, 580, 855, 1049
BstMWI	GCNNNNNNNGC	3 cut(s)	206, 371, 584
BstNI	CCWGG	1 cut(s)	846
BstNSI	RCATGY	2 cut(s)	372, 611
BstSCI	CCNGG	1 cut(s)	844
BstSFI	CTRYAG	1 cut(s)	522
BstUI	CGCG	3 cut(s)	98, 163, 927
BstV1I	GCAGC	1 cut(s)	560
BstX2I	RGATCY	2 cut(s)	255, 1049
BstYI	RGATCY	2 cut(s)	255, 1049
BstZ17I	GTATAC	1 cut(s)	488
BsuI	GTATCC	2 cut(s)	583, 798
BsuRI	GGCC	1 cut(s)	45
BtgZI	GCGATG	1 cut(s)	346
BtsCI	GGATG	4 cut(s)	154, 456, 854, 858
BtsI	GCAGTG	1 cut(s)	588
BtsIMutI	CAGTG	5 cut(s)	272, 588, 719, 904, 921
BveI	ACCTGC	1 cut(s)	389
Cac8I	GCNNGC	2 cut(s)	319, 595
CaiI	CAGNNNCTG	1 cut(s)	903
Cfr13I	GGNCC	2 cut(s)	43, 938
CseI	GACGC	1 cut(s)	434
Csp6I	GTAC	3 cut(s)	212, 288, 532
CspCI	CAANNNNNGTGG	2 cut(s)	454, 489
CviAII	CATG	6 cut(s)	16, 369, 608, 748, 783, 859
CviQI	GTAC	3 cut(s)	212, 288, 532
DdeI	CTNAG	5 cut(s)	21, 259, 553, 896, 942
DpnI	GATC	4 cut(s)	257, 582, 857, 1051
DpnII	GATC	4 cut(s)	255, 580, 855, 1049
DraI	TTTAAA	1 cut(s)	1045
Eam1104I	CTCTTC	1 cut(s)	98
EarI	CTCTTC	1 cut(s)	98
Eco130I	CCWWGG	4 cut(s)	283, 874, 954, 1008
Eco32I	GATATC	1 cut(s)	831
Eco47I	GGWCC	1 cut(s)	938
EcoO109I	RGGNCCY	1 cut(s)	938
EcoRI	GAATTC	1 cut(s)	452
EcoRII	CCWGG	1 cut(s)	844
EcoRV	GATATC	1 cut(s)	831
EcoT14I	CCWWGG	4 cut(s)	283, 874, 954, 1008
EcoT22I	ATGCAT	1 cut(s)	613
ErhI	CCWWGG	4 cut(s)	283, 874, 954, 1008
FaeI	CATG	6 cut(s)	19, 372, 611, 751, 786, 862
FalI	AAGNNNNNCTT	2 cut(s)	242, 274
FaqI	GGGAC	3 cut(s)	100, 352, 951
FatI	CATG	6 cut(s)	15, 368, 607, 747, 782, 858
FauI	CCCGC	2 cut(s)	156, 326
FbaI	TGATCA	1 cut(s)	855
FblI	GTMKAC	1 cut(s)	487
Fnu4HI	GCNGC	1 cut(s)	549
FokI	GGATG	4 cut(s)	141, 443, 861, 865
Fsp4HI	GCNGC	1 cut(s)	549
FspBI	CTAG	3 cut(s)	83, 875, 1057
GluI	GCNGC	1 cut(s)	549
GsuI	CTGGAG	2 cut(s)	363, 783
HaeIII	GGCC	1 cut(s)	45
HgaI	GACGC	1 cut(s)	434
Hin1II	CATG	6 cut(s)	19, 372, 611, 751, 786, 862
HinfI	GANTC	4 cut(s)	25, 88, 227, 879
HphI	GGTGA	1 cut(s)	440
Hpy166II	GTNNAC	3 cut(s)	431, 465, 488
Hpy188I	TCNGA	4 cut(s)	147, 556, 616, 711
Hpy188III	TCNNGA	4 cut(s)	449, 602, 698, 834
Hpy8I	GTNNAC	3 cut(s)	431, 465, 488
HpyAV	CCTTC	4 cut(s)	168, 185, 407, 551
HpyCH4III	ACNGT	4 cut(s)	107, 276, 571, 916
HpyF10VI	GCNNNNNNNGC	3 cut(s)	206, 371, 584
HpyF3I	CTNAG	5 cut(s)	21, 259, 553, 896, 942
Hsp92II	CATG	6 cut(s)	19, 372, 611, 751, 786, 862
KpnI	GGTACC	1 cut(s)	291
Ksp22I	TGATCA	1 cut(s)	855
Kzo9I	GATC	4 cut(s)	255, 580, 855, 1049
Lsp1109I	GCAGC	1 cut(s)	560
LweI	GCATC	2 cut(s)	620, 625
MaeI	CTAG	3 cut(s)	83, 875, 1057
MaeIII	GTNAC	4 cut(s)	112, 266, 910, 929
MalI	GATC	4 cut(s)	257, 582, 857, 1051
MbiI	CCGCTC	1 cut(s)	540
MboI	GATC	4 cut(s)	255, 580, 855, 1049
MboII	GAAGA	2 cut(s)	85, 727
MfeI	CAATTG	1 cut(s)	375
MflI	RGATCY	2 cut(s)	255, 1049
MluCI	AATT	5 cut(s)	136, 234, 375, 452, 501
MlyI	GAGTC	3 cut(s)	19, 82, 221
MnlI	CCTC	5 cut(s)	34, 246, 290, 338, 562
Mph1103I	ATGCAT	1 cut(s)	613
MseI	TTAA	1 cut(s)	1044
MslI	CAYNNNNRTG	3 cut(s)	633, 968, 995
MspA1I	CMGCKG	1 cut(s)	578
MspR9I	CCNGG	1 cut(s)	846
MunI	CAATTG	1 cut(s)	375
Mva1269I	GAATGC	1 cut(s)	597
MvaI	CCWGG	1 cut(s)	846
MvnI	CGCG	3 cut(s)	98, 163, 927
MwoI	GCNNNNNNNGC	3 cut(s)	206, 371, 584
NdeII	GATC	4 cut(s)	255, 580, 855, 1049
NlaIII	CATG	6 cut(s)	19, 372, 611, 751, 786, 862
NlaIV	GGNNCC	3 cut(s)	289, 921, 939
NmuCI	GTSAC	2 cut(s)	112, 910
NsiI	ATGCAT	1 cut(s)	613
NspI	RCATGY	2 cut(s)	372, 611
NspV	TTCGAA	1 cut(s)	753
PaqCI	CACCTGC	1 cut(s)	389
PciI	ACATGT	1 cut(s)	368
PctI	GAATGC	1 cut(s)	597
PfeI	GAWTC	1 cut(s)	879
PkrI	GCNGC	1 cut(s)	550
PleI	GAGTC	3 cut(s)	19, 82, 221
PpsI	GAGTC	3 cut(s)	19, 82, 221
PpuMI	RGGWCCY	1 cut(s)	938
PscI	ACATGT	1 cut(s)	368
PsiI	TTATAA	1 cut(s)	135
Psp5II	RGGWCCY	1 cut(s)	938
Psp6I	CCWGG	1 cut(s)	844
PspGI	CCWGG	1 cut(s)	844
PspN4I	GGNNCC	3 cut(s)	289, 921, 939
PspPI	GGNCC	2 cut(s)	43, 938
PspPPI	RGGWCCY	1 cut(s)	938
PstNI	CAGNNNCTG	1 cut(s)	903
PsuI	RGATCY	2 cut(s)	255, 1049
RsaI	GTAC	3 cut(s)	213, 289, 533
RsaNI	GTAC	3 cut(s)	212, 288, 532
RseI	CAYNNNNRTG	3 cut(s)	633, 968, 995
SaqAI	TTAA	1 cut(s)	1044
SatI	GCNGC	1 cut(s)	549
Sau3AI	GATC	4 cut(s)	255, 580, 855, 1049
Sau96I	GGNCC	2 cut(s)	43, 938
ScaI	AGTACT	2 cut(s)	213, 533
SchI	GAGTC	3 cut(s)	19, 82, 221
ScrFI	CCNGG	1 cut(s)	846
SetI	ASST	9 cut(s)	58, 331, 403, 418, 480, 645, 728, 847, 943
SfaNI	GCATC	2 cut(s)	620, 625
SfcI	CTRYAG	1 cut(s)	522
SfuI	TTCGAA	1 cut(s)	753
SinI	GGWCC	1 cut(s)	938
SmiMI	CAYNNNNRTG	3 cut(s)	633, 968, 995
SmlI	CTYRAG	1 cut(s)	38
SmoI	CTYRAG	1 cut(s)	38
Sse9I	AATT	5 cut(s)	136, 234, 375, 452, 501
SsiI	CCGC	5 cut(s)	163, 319, 538, 576, 927
SspI	AATATT	1 cut(s)	303
SspMI	CTAG	3 cut(s)	83, 875, 1057
StyD4I	CCNGG	1 cut(s)	844
StyI	CCWWGG	4 cut(s)	283, 874, 954, 1008
TaaI	ACNGT	4 cut(s)	107, 276, 571, 916
TaqI	TCGA	1 cut(s)	753
TasI	AATT	5 cut(s)	136, 234, 375, 452, 501
TatI	WGTACW	2 cut(s)	211, 531
TfiI	GAWTC	1 cut(s)	879
Tru1I	TTAA	1 cut(s)	1044
Tru9I	TTAA	1 cut(s)	1044
TscAI	CASTG	5 cut(s)	279, 595, 726, 904, 921
TseFI	GTSAC	2 cut(s)	112, 910
TseI	GCWGC	1 cut(s)	548
Tsp45I	GTSAC	2 cut(s)	112, 910
TspDTI	ATGAA	5 cut(s)	207, 349, 445, 460, 736
TspRI	CASTG	5 cut(s)	279, 595, 726, 904, 921
VpaK11BI	GGWCC	1 cut(s)	938
XapI	RAATTY	1 cut(s)	452
XceI	RCATGY	2 cut(s)	372, 611
XmaJI	CCTAGG	1 cut(s)	874
XmiI	GTMKAC	1 cut(s)	487
XspI	CTAG	3 cut(s)	83, 875, 1057
ZrmI	AGTACT	2 cut(s)	213, 533
Zsp2I	ATGCAT	1 cut(s)	613

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.