Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007669

Physical Location & Seq

Genomic Coordinates Reverse (-)

11175559 .. 11177362

Gene Structure 1804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G31260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGACTAAATCTCATGTCATTTTCTCTGCCTCCATCGCTCTCTTTCTCCTACTCTCCATCTCGCATTTCCCGGGAGCTCTCTCTCAATCCAATAAAGATTGCCAATCAAAATCCAACTACTCATGTATAGACAAAAACAAAGCATTAGATCTCAAACTCTTATCAATCTTCTCAATTCTCATCACTAGTCTAATCGGTGTTTGCCTCCCGTTCTTTGCCCGATCAATTCCCGCTTTCCAACCCGAGAAATCTCACTTCCTCATCGTAAAATCTTTCGCCTCCGGAATCATCCTTTCCACTGGTTTCATGCATGTCTTGCCTGATTCTTTCGAGATGCTTTCATCTCCTTGTCTTAACGATAACCCCTGGCACAAGTTTCCTTTCGCCGGCTTTGTAGCCATGATGTCTGCCGTGTTCACGCTCATGGTTGACTCTATTACCACCAGCGTCTTCACCAAGTCAGGAAGGAAAGATCTACGTGCTGACGTAGCATCCGTTGAGACTCCTGACCAAGAGATAGGGCACGTACAGGTTCATGGCCATGTTCATAGCCATACTCTTCCTCACAATCTTCATGGAGAGAATGATAAAGAGCTTGGTTCTTATTTACAGCTTCTGCGGTATCGTATTCTTGCAATCGTATTGGAGCTAGGAATAGTGGTGCAGTCGATAGTGATAGGACTATCGGTAGGAGACACTAACAATACTTGCACCATCAAAGGACTCGTCGCTGCGCTTTGCTTCCATCAAATGTTCGAAGGCATGGGTCTCGGCGGTTGCATCCTTCAGGCGGAGTACGGGTGGGTTAAAAAGGCGGTGATGGCTTTCTTTTTTGCGGTGACGACGCCTTTTGGAGTGGTTCTAGGGATGGCACTATCTAAAACATACAAAGAGAATAGCCCTGAATCGCTTATAACAGTTGGGTTGCTCAACGCTTCCTCGGCAGGACTACTCATCTACATGGCTTTAGTTGACCTTCTAGCTGCCGATTTTATGGGTCAAAAAATGCAAAGGAGCATCAAGCTTCAATTAAAGTCATATGCTGCCGTTTTGCTTGGTGCTGGTGGCATGTCCGTCATGGCCAAGTGGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000302 GO:0003674 GO:0005215 GO:0005381 GO:0005385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006829 GO:0006950 GO:0006979 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0012505 GO:0015075 GO:0015318 GO:0015675 GO:0015691 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0031410 GO:0031982 GO:0031984 GO:0032870 GO:0033554 GO:0034220 GO:0034599 GO:0034614 GO:0034755 GO:0035690 GO:0042221 GO:0042493 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0055085 GO:0070838 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0071577 GO:0071731 GO:0071732 GO:0071944 GO:0072509 GO:0072511 GO:0097366 GO:0097708 GO:0098655 GO:0098660 GO:0098662 GO:0098791 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

364

Amino Acids

39.49

Weight (kDa)

8.4

Isoelectric Point (pI)

37.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zip	PF02535	50 - 361	1.1e-89	ZIP Zinc transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007669)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31260 AT4G19690 AT4G19690
fragaria_vesca	FvH4_3g12020
malus_domestica	MD05G1255500.v1.1
prunus_persica	Prupe.4G108400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0019701 RchiOBHm_Chr5g0019711
rosa_laevigata	RLG00000032462 RLG00000032463
rosa_multiflora	Rmu_sc0003325.1_g000008 Rmu_ssc0000062.1_g000007 Rmu_ssc0000062.1_g000017
rosa_roxburghii	Rroxscaffold_1G00058400
rosa_rugosa	Rorug05G0052700 Rorug05G0053300
rosa_samantha	Rh5AG143700 Rh5BG142200 Rh5BG142600 Rh5CG153900 Rh5CG154000 Rh5DG142600 Rh5DG142700
rosa_wichuraiana	Rw5G012720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	914
AccIII	TCCGGA	1 cut(s)	281
AciI	CCGC	6 cut(s)	231, 619, 774, 791, 815, 836
AcoI	YGGCCR	2 cut(s)	538, 1080
AcuI	CTGAAG	1 cut(s)	770
AcyI	GRCGYC	1 cut(s)	845
AfaI	GTAC	2 cut(s)	528, 797
AfiI	CCNNNNNNNGG	2 cut(s)	386, 790
AgsI	TTSAA	1 cut(s)	1028
AhlI	ACTAGT	1 cut(s)	185
AjnI	CCWGG	1 cut(s)	365
AluBI	AGCT	6 cut(s)	77, 595, 613, 649, 983, 1024
AluI	AGCT	6 cut(s)	77, 595, 613, 649, 983, 1024
Alw21I	GWGCWC	1 cut(s)	79
Alw26I	GTCTC	3 cut(s)	494, 687, 773
AlwNI	CAGNNNCTG	1 cut(s)	616
Ama87I	CYCGRG	2 cut(s)	70, 242
Aor13HI	TCCGGA	1 cut(s)	281
AoxI	GGCC	2 cut(s)	538, 1080
ApeKI	GCWGC	3 cut(s)	731, 983, 1043
ArsI	GACNNNNNNTTYG	2 cut(s)	711, 743
AspLEI	GCGC	1 cut(s)	736
AsuC2I	CCSGG	2 cut(s)	71, 72
AsuHPI	GGTGA	3 cut(s)	445, 829, 850
AsuII	TTCGAA	1 cut(s)	756
AvaI	CYCGRG	2 cut(s)	70, 242
BaeGI	GKGCMC	1 cut(s)	525
BalI	TGGCCA	2 cut(s)	540, 1082
BanII	GRGCYC	1 cut(s)	79
BbsI	GAAGAC	1 cut(s)	442
Bbv12I	GWGCWC	1 cut(s)	79
BbvI	GCAGC	3 cut(s)	718, 970, 1030
BccI	CCATC	6 cut(s)	41, 65, 722, 753, 814, 862
BceAI	ACGGC	2 cut(s)	395, 1031
BcgI	CGANNNNNNTGC	2 cut(s)	751, 785
BciT130I	CCWGG	1 cut(s)	367
BcnI	CCSGG	2 cut(s)	71, 72
BcoDI	GTCTC	3 cut(s)	494, 687, 773
BcuI	ACTAGT	1 cut(s)	185
BfaI	CTAG	4 cut(s)	186, 650, 863, 980
BglI	GCCNNNNNGGC	1 cut(s)	1088
BglII	AGATCT	2 cut(s)	148, 472
BisI	GCNGC	3 cut(s)	732, 984, 1044
BlsI	GCNGC	3 cut(s)	733, 985, 1045
Bme1390I	CCNGG	3 cut(s)	71, 72, 367
BmeT110I	CYCGRG	2 cut(s)	70, 242
BmrFI	CCNGG	3 cut(s)	71, 72, 367
BmsI	GCATC	4 cut(s)	324, 500, 789, 1026
BpiI	GAAGAC	1 cut(s)	442
Bpu14I	TTCGAA	1 cut(s)	756
BpuMI	CCSGG	2 cut(s)	71, 72
BsaAI	YACGTR	2 cut(s)	479, 526
BsaHI	GRCGYC	1 cut(s)	845
BsaI	GGTCTC	1 cut(s)	773
BsaJI	CCNNGG	3 cut(s)	70, 365, 939
BsaWI	WCCGGW	1 cut(s)	281
BsaXI	ACNNNNNCTCC	2 cut(s)	785, 815
Bsc4I	CCNNNNNNNGG	2 cut(s)	386, 790
Bse118I	RCCGGY	1 cut(s)	386
Bse1I	ACTGG	1 cut(s)	304
BseAI	TCCGGA	1 cut(s)	281
BseBI	CCWGG	1 cut(s)	367
BseDI	CCNNGG	3 cut(s)	70, 365, 939
BseGI	GGATG	4 cut(s)	288, 491, 780, 873
BseLI	CCNNNNNNNGG	2 cut(s)	386, 790
BseNI	ACTGG	1 cut(s)	304
BseSI	GKGCMC	1 cut(s)	525
BseXI	GCAGC	3 cut(s)	718, 970, 1030
BsgI	GTGCAG	1 cut(s)	683
BshFI	GGCC	2 cut(s)	540, 1082
BsiHKAI	GWGCWC	1 cut(s)	79
BsiHKCI	CYCGRG	2 cut(s)	70, 242
BsiSI	CCGG	3 cut(s)	71, 282, 387
BslI	CCNNNNNNNGG	2 cut(s)	386, 790
BsmAI	GTCTC	3 cut(s)	494, 687, 773
BsnI	GGCC	2 cut(s)	540, 1082
Bso31I	GGTCTC	1 cut(s)	773
BsoBI	CYCGRG	2 cut(s)	70, 242
Bsp119I	TTCGAA	1 cut(s)	756
Bsp1286I	GDGCHC	2 cut(s)	79, 525
Bsp13I	TCCGGA	1 cut(s)	281
Bsp143I	GATC	3 cut(s)	148, 221, 472
BspACI	CCGC	6 cut(s)	231, 619, 774, 791, 815, 836
BspANI	GGCC	2 cut(s)	540, 1082
BspEI	TCCGGA	1 cut(s)	281
BspT104I	TTCGAA	1 cut(s)	756
BspTNI	GGTCTC	1 cut(s)	773
BsrFI	RCCGGY	1 cut(s)	386
BsrI	ACTGG	1 cut(s)	304
BssAI	RCCGGY	1 cut(s)	386
BssECI	CCNNGG	3 cut(s)	70, 365, 939
BssMI	GATC	3 cut(s)	148, 221, 472
BssNI	GRCGYC	1 cut(s)	845
Bst2UI	CCWGG	1 cut(s)	367
Bst4CI	ACNGT	1 cut(s)	919
Bst6I	CTCTTC	1 cut(s)	564
BstACI	GRCGYC	1 cut(s)	845
BstAPI	GCANNNNNTGC	1 cut(s)	316
BstBAI	YACGTR	2 cut(s)	479, 526
BstBI	TTCGAA	1 cut(s)	756
BstC8I	GCNNGC	1 cut(s)	388
BstF5I	GGATG	4 cut(s)	288, 491, 780, 873
BstHHI	GCGC	1 cut(s)	736
BstKTI	GATC	3 cut(s)	151, 224, 475
BstMAI	GTCTC	3 cut(s)	494, 687, 773
BstMBI	GATC	3 cut(s)	148, 221, 472
BstMWI	GCNNNNNNNGC	6 cut(s)	35, 316, 488, 821, 941, 1088
BstNI	CCWGG	1 cut(s)	367
BstNSI	RCATGY	2 cut(s)	314, 1072
BstSCI	CCNGG	3 cut(s)	69, 70, 365
BstSLI	GKGCMC	1 cut(s)	525
BstV1I	GCAGC	3 cut(s)	718, 970, 1030
BstV2I	GAAGAC	1 cut(s)	442
BstX2I	RGATCY	2 cut(s)	148, 472
BstYI	RGATCY	2 cut(s)	148, 472
BsuRI	GGCC	2 cut(s)	540, 1082
BtgZI	GCGATG	1 cut(s)	19
BtsCI	GGATG	4 cut(s)	288, 491, 780, 873
BtsIMutI	CAGTG	1 cut(s)	297
Cac8I	GCNNGC	1 cut(s)	388
CaiI	CAGNNNCTG	1 cut(s)	616
CfoI	GCGC	1 cut(s)	736
Cfr10I	RCCGGY	1 cut(s)	386
Cfr9I	CCCGGG	1 cut(s)	70
CseI	GACGC	2 cut(s)	436, 853
Csp6I	GTAC	2 cut(s)	527, 796
CviQI	GTAC	2 cut(s)	527, 796
DpnI	GATC	3 cut(s)	150, 223, 474
DpnII	GATC	3 cut(s)	148, 221, 472
EaeI	YGGCCR	2 cut(s)	538, 1080
Eam1104I	CTCTTC	1 cut(s)	564
EarI	CTCTTC	1 cut(s)	564
EciI	GGCGGA	1 cut(s)	806
Ecl136II	GAGCTC	1 cut(s)	77
Eco24I	GRGCYC	1 cut(s)	79
Eco31I	GGTCTC	1 cut(s)	773
Eco53kI	GAGCTC	1 cut(s)	77
Eco57I	CTGAAG	1 cut(s)	770
Eco88I	CYCGRG	2 cut(s)	70, 242
EcoICRI	GAGCTC	1 cut(s)	77
EcoRII	CCWGG	1 cut(s)	365
EcoT22I	ATGCAT	1 cut(s)	312
EcoT38I	GRGCYC	1 cut(s)	79
FauI	CCCGC	1 cut(s)	238
FauNDI	CATATG	1 cut(s)	1039
Fnu4HI	GCNGC	3 cut(s)	732, 984, 1044
FokI	GGATG	4 cut(s)	275, 478, 767, 880
FriOI	GRGCYC	1 cut(s)	79
Fsp4HI	GCNGC	3 cut(s)	732, 984, 1044
FspBI	CTAG	4 cut(s)	186, 650, 863, 980
GlaI	GCGC	1 cut(s)	735
GluI	GCNGC	3 cut(s)	732, 984, 1044
HaeIII	GGCC	2 cut(s)	540, 1082
HapII	CCGG	3 cut(s)	71, 282, 387
HgaI	GACGC	2 cut(s)	436, 853
HhaI	GCGC	1 cut(s)	736
Hin1I	GRCGYC	1 cut(s)	845
Hin6I	GCGC	1 cut(s)	734
HinP1I	GCGC	1 cut(s)	734
HincII	GTYRAC	2 cut(s)	430, 973
HindII	GTYRAC	2 cut(s)	430, 973
HindIII	AAGCTT	1 cut(s)	1022
HinfI	GANTC	6 cut(s)	285, 323, 431, 502, 723, 905
HpaII	CCGG	3 cut(s)	71, 282, 387
HphI	GGTGA	3 cut(s)	445, 829, 850
Hpy166II	GTNNAC	3 cut(s)	417, 430, 973
Hpy188III	TCNNGA	4 cut(s)	282, 331, 462, 506
Hpy8I	GTNNAC	3 cut(s)	417, 430, 973
Hpy99I	CGWCG	2 cut(s)	731, 847
HpyAV	CCTTC	4 cut(s)	459, 752, 794, 986
HpyCH4III	ACNGT	1 cut(s)	919
HpyCH4IV	ACGT	3 cut(s)	478, 486, 525
HpyCH4V	TGCA	6 cut(s)	310, 635, 664, 711, 780, 1009
HpyF10VI	GCNNNNNNNGC	6 cut(s)	35, 316, 488, 821, 941, 1088
HpySE526I	ACGT	3 cut(s)	478, 486, 525
Hsp92I	GRCGYC	1 cut(s)	845
HspAI	GCGC	1 cut(s)	734
Kpn2I	TCCGGA	1 cut(s)	281
KroI	GCCGGC	1 cut(s)	386
KroNI	GCCGGC	1 cut(s)	388
Kzo9I	GATC	3 cut(s)	148, 221, 472
LmnI	GCTCC	3 cut(s)	74, 646, 1014
Lsp1109I	GCAGC	3 cut(s)	718, 970, 1030
LweI	GCATC	4 cut(s)	324, 500, 789, 1026
MaeI	CTAG	4 cut(s)	186, 650, 863, 980
MaeII	ACGT	3 cut(s)	478, 486, 525
MaeIII	GTNAC	1 cut(s)	838
MalI	GATC	3 cut(s)	150, 223, 474
MboI	GATC	3 cut(s)	148, 221, 472
MboII	GAAGA	4 cut(s)	160, 442, 551, 563
MflI	RGATCY	2 cut(s)	148, 472
MhlI	GDGCHC	2 cut(s)	79, 525
MlsI	TGGCCA	2 cut(s)	540, 1082
MluCI	AATT	3 cut(s)	174, 225, 1028
MluNI	TGGCCA	2 cut(s)	540, 1082
MlyI	GAGTC	3 cut(s)	425, 496, 717
MmeI	TCCRAC	2 cut(s)	138, 262
MnlI	CCTC	6 cut(s)	40, 215, 269, 289, 573, 949
Mox20I	TGGCCA	2 cut(s)	540, 1082
Mph1103I	ATGCAT	1 cut(s)	312
MroI	TCCGGA	1 cut(s)	281
MroNI	GCCGGC	1 cut(s)	386
MscI	TGGCCA	2 cut(s)	540, 1082
MseI	TTAA	3 cut(s)	354, 807, 1031
MslI	CAYNNNNRTG	3 cut(s)	422, 540, 959
Msp20I	TGGCCA	2 cut(s)	540, 1082
MspI	CCGG	3 cut(s)	71, 282, 387
MspR9I	CCNGG	3 cut(s)	71, 72, 367
MvaI	CCWGG	1 cut(s)	367
MwoI	GCNNNNNNNGC	6 cut(s)	35, 316, 488, 821, 941, 1088
NaeI	GCCGGC	1 cut(s)	388
NciI	CCSGG	2 cut(s)	71, 72
NdeI	CATATG	1 cut(s)	1039
NdeII	GATC	3 cut(s)	148, 221, 472
NgoMIV	GCCGGC	1 cut(s)	386
NmeAIII	GCCGAG	2 cut(s)	750, 920
NmuCI	GTSAC	1 cut(s)	838
NsiI	ATGCAT	1 cut(s)	312
NspI	RCATGY	2 cut(s)	314, 1072
NspV	TTCGAA	1 cut(s)	756
PcsI	WCGNNNNNNNCGW	1 cut(s)	492
PdiI	GCCGGC	1 cut(s)	388
PfeI	GAWTC	3 cut(s)	285, 323, 905
PkrI	GCNGC	3 cut(s)	733, 985, 1045
PleI	GAGTC	3 cut(s)	425, 496, 717
PpsI	GAGTC	3 cut(s)	425, 496, 717
Ppu21I	YACGTR	2 cut(s)	479, 526
PsiI	TTATAA	1 cut(s)	914
Psp124BI	GAGCTC	1 cut(s)	79
Psp6I	CCWGG	1 cut(s)	365
PspGI	CCWGG	1 cut(s)	365
PstNI	CAGNNNCTG	1 cut(s)	616
PsuI	RGATCY	2 cut(s)	148, 472
RsaI	GTAC	2 cut(s)	528, 797
RsaNI	GTAC	2 cut(s)	527, 796
RseI	CAYNNNNRTG	3 cut(s)	422, 540, 959
SacI	GAGCTC	1 cut(s)	79
SaqAI	TTAA	3 cut(s)	354, 807, 1031
SatI	GCNGC	3 cut(s)	732, 984, 1044
Sau3AI	GATC	3 cut(s)	148, 221, 472
SchI	GAGTC	3 cut(s)	425, 496, 717
ScrFI	CCNGG	3 cut(s)	71, 72, 367
SduI	GDGCHC	2 cut(s)	79, 525
SfaNI	GCATC	4 cut(s)	324, 500, 789, 1026
SfuI	TTCGAA	1 cut(s)	756
SmaI	CCCGGG	1 cut(s)	72
SmiMI	CAYNNNNRTG	3 cut(s)	422, 540, 959
SpeI	ACTAGT	1 cut(s)	185
Sse9I	AATT	3 cut(s)	174, 225, 1028
SsiI	CCGC	6 cut(s)	231, 619, 774, 791, 815, 836
SspMI	CTAG	4 cut(s)	186, 650, 863, 980
SstI	GAGCTC	1 cut(s)	79
StyD4I	CCNGG	3 cut(s)	69, 70, 365
TaaI	ACNGT	1 cut(s)	919
TaiI	ACGT	3 cut(s)	481, 489, 528
TaqI	TCGA	3 cut(s)	330, 668, 756
TasI	AATT	3 cut(s)	174, 225, 1028
TfiI	GAWTC	3 cut(s)	285, 323, 905
Tru1I	TTAA	3 cut(s)	354, 807, 1031
Tru9I	TTAA	3 cut(s)	354, 807, 1031
TscAI	CASTG	1 cut(s)	304
TseFI	GTSAC	1 cut(s)	838
TseI	GCWGC	3 cut(s)	731, 983, 1043
Tsp45I	GTSAC	1 cut(s)	838
TspDTI	ATGAA	5 cut(s)	295, 330, 524, 536, 563
TspGWI	ACGGA	2 cut(s)	484, 1063
TspMI	CCCGGG	1 cut(s)	70
TspRI	CASTG	1 cut(s)	304
XceI	RCATGY	2 cut(s)	314, 1072
XmaI	CCCGGG	1 cut(s)	70
XspI	CTAG	4 cut(s)	186, 650, 863, 980
Zsp2I	ATGCAT	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.