Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0007669

Physical Location & Seq

Genomic Coordinates Reverse (-)

7104810 .. 7106704

Gene Structure 1895 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g12020.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGCCACTACCAGTTCACTTTCCAAAGTACTCCTCCCAATCTTCTTCATAATCCTCGTCTCCGCTCTCATTCCTCAAGCTCATTCGATATCCGAGGGCGATGAATGCGAGTCTGAAACTACCAACTCCTGCAACGACAAGGCCGGAGCTGTGCCGCTCAAGATCATAGCCATCACCTCCATCCTGGTCACCAGCATGATCGGTGTGTCCTTGCCACTCGTCACTCGCGCCGTGCCCGCCTTGCACCCCGACCGAGACCTATTCGTGATCGTCAAGTGCTTTGCCGGCGGCATTATTCTTGCCACGGGGTTCATGCACGTTTTGCCGGACTCTTTTGACATGTTGAACTCGAATTGTTTGGCTGAGAAGCCGTGGCACAAGTTTCCTTTCACTGGGTTTGTTGCTATGCTGTCTGCTATTGTGACTATGATGGTGGACTCCATGGCTACTAGCATATACAGCAAGAGATCTAAAGCCGGAGCAGTTAACCCCGATACTGATGGTGTTGCTGCCATTGAGGGAGATCAAGAGATGGCTGTGGCGGGTGGCGGACACGGACATTTTCATTCACATAATCATCAAGTTAAAGGAGGAAGTGAGTCACAACTGTCACGCTATCGCGTTGTTGCCATGGTACTGGAACTGGGGATTATTGTTCACTCAATTGTTATAGGGCTTTCTCTTGGAGCTTCAAACAACACTTGCACCATTAAAGGTCTTGTAGCTGCCCTTTGCTTCCATCAAATGTTTGAAGGCATGGGACTTGGTGGTTGCATTCTCCAGGCCGAGTACAAGTTCATGAAGAAGGTAATCATGGTGTTCTTCTTCTCGATAACAACTCCATCTGGAATTGCACTGGGAATGGCCGTGTCGAAAATGTACAAAGAAAACAGTCCAAGGGCATTAGTTACAGTAGGACTGCTGAATGCTTCTTCAGCCGGGCTCCTCATCTACATGGCATTGGTTGATCTTCTCTCTGCTGACTTCATGGGTCCAAAGTTGCAACGCAGCATTAAGCTCCAGATCAAGTCTTACATGGCGGTTCTTTTGGGTGCTGGTGGCATGTCTTTGTTGGCAAAATGGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000302 GO:0003674 GO:0005215 GO:0005381 GO:0005385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006829 GO:0006950 GO:0006979 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0012505 GO:0015075 GO:0015318 GO:0015675 GO:0015691 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0031410 GO:0031982 GO:0031984 GO:0032870 GO:0033554 GO:0034220 GO:0034599 GO:0034614 GO:0034755 GO:0035690 GO:0042221 GO:0042493 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0055085 GO:0070838 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0071577 GO:0071731 GO:0071732 GO:0071944 GO:0072509 GO:0072511 GO:0097366 GO:0097708 GO:0098655 GO:0098660 GO:0098662 GO:0098791 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

363

Amino Acids

38.43

Weight (kDa)

8.12

Isoelectric Point (pI)

35.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zip	PF02535	52 - 359	2.4e-84	ZIP Zinc transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007669)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31260 AT4G19690 AT4G19690
fragaria_vesca	FvH4_3g12020
malus_domestica	MD05G1255500.v1.1
prunus_persica	Prupe.4G108400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0019701 RchiOBHm_Chr5g0019711
rosa_laevigata	RLG00000032462 RLG00000032463
rosa_multiflora	Rmu_sc0003325.1_g000008 Rmu_ssc0000062.1_g000007 Rmu_ssc0000062.1_g000017
rosa_roxburghii	Rroxscaffold_1G00058400
rosa_rugosa	Rorug05G0052700 Rorug05G0053300
rosa_samantha	Rh5AG143700 Rh5BG142200 Rh5BG142600 Rh5CG153900 Rh5CG154000 Rh5DG142600 Rh5DG142700
rosa_wichuraiana	Rw5G012720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	65, 157
AccII	CGCG	2 cut(s)	228, 621
AciI	CCGC	7 cut(s)	63, 155, 237, 288, 542, 549, 1040
AcoI	YGGCCR	2 cut(s)	3, 864
AcuI	CTGAAG	1 cut(s)	918
AfaI	GTAC	4 cut(s)	30, 636, 791, 881
AfiI	CCNNNNNNNGG	1 cut(s)	392
AflIII	ACRYGT	1 cut(s)	339
AgsI	TTSAA	3 cut(s)	346, 693, 752
AjnI	CCWGG	2 cut(s)	183, 780
AluBI	AGCT	5 cut(s)	80, 149, 689, 725, 1018
AluI	AGCT	5 cut(s)	80, 149, 689, 725, 1018
Alw26I	GTCTC	2 cut(s)	64, 249
AoxI	GGCC	4 cut(s)	3, 141, 783, 864
ApeKI	GCWGC	3 cut(s)	509, 725, 1008
AspLEI	GCGC	1 cut(s)	230
AspS9I	GGNCC	1 cut(s)	992
AsuC2I	CCSGG	1 cut(s)	940
AsuHPI	GGTGA	2 cut(s)	166, 181
AvaII	GGWCC	1 cut(s)	992
BaeGI	GKGCMC	1 cut(s)	237
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	945
BbvI	GCAGC	3 cut(s)	496, 712, 1020
BccI	CCATC	7 cut(s)	179, 188, 424, 494, 526, 747, 850
BceAI	ACGGC	3 cut(s)	215, 355, 851
BciT130I	CCWGG	2 cut(s)	185, 782
BcnI	CCSGG	1 cut(s)	940
BcoDI	GTCTC	2 cut(s)	64, 249
BfaI	CTAG	1 cut(s)	450
BglII	AGATCT	1 cut(s)	467
BisI	GCNGC	5 cut(s)	155, 289, 510, 726, 1009
BlsI	GCNGC	5 cut(s)	156, 290, 511, 727, 1010
BmcAI	AGTACT	1 cut(s)	30
Bme1390I	CCNGG	3 cut(s)	185, 782, 940
Bme18I	GGWCC	1 cut(s)	992
BmgT120I	GGNCC	1 cut(s)	992
BmiI	GGNNCC	2 cut(s)	944, 993
BmrFI	CCNGG	3 cut(s)	185, 782, 940
BmrI	ACTGGG	3 cut(s)	402, 653, 866
BmuI	ACTGGG	3 cut(s)	402, 653, 866
BpmI	CTGGAG	2 cut(s)	764, 1004
BpuEI	CTTGAG	2 cut(s)	60, 143
BpuMI	CCSGG	1 cut(s)	940
BsaI	GGTCTC	1 cut(s)	249
BsaJI	CCNNGG	6 cut(s)	93, 303, 371, 441, 630, 896
Bsc4I	CCNNNNNNNGG	1 cut(s)	392
Bse118I	RCCGGY	1 cut(s)	284
Bse1I	ACTGG	5 cut(s)	12, 397, 642, 648, 861
BseBI	CCWGG	2 cut(s)	185, 782
BseDI	CCNNGG	6 cut(s)	93, 303, 371, 441, 630, 896
BseGI	GGATG	1 cut(s)	180
BseLI	CCNNNNNNNGG	1 cut(s)	392
BseMII	CTCAG	1 cut(s)	354
BseNI	ACTGG	5 cut(s)	12, 397, 642, 648, 861
BseRI	GAGGAG	2 cut(s)	23, 935
BseSI	GKGCMC	1 cut(s)	237
BseXI	GCAGC	3 cut(s)	496, 712, 1020
Bsh1236I	CGCG	2 cut(s)	228, 621
Bsh1285I	CGRYCG	1 cut(s)	253
BshFI	GGCC	4 cut(s)	5, 143, 785, 866
BsiEI	CGRYCG	1 cut(s)	253
BsiSI	CCGG	5 cut(s)	144, 285, 326, 477, 939
BslFI	GGGAC	1 cut(s)	774
BslI	CCNNNNNNNGG	1 cut(s)	392
BsmAI	GTCTC	2 cut(s)	64, 249
BsmBI	CGTCTC	1 cut(s)	64
BsmFI	GGGAC	1 cut(s)	774
BsmI	GAATGC	3 cut(s)	110, 774, 931
BsnI	GGCC	4 cut(s)	5, 143, 785, 866
Bso31I	GGTCTC	1 cut(s)	249
Bsp1286I	GDGCHC	2 cut(s)	237, 945
Bsp1407I	TGTACA	1 cut(s)	879
Bsp143I	GATC	7 cut(s)	162, 198, 267, 467, 523, 967, 1023
Bsp19I	CCATGG	2 cut(s)	441, 630
BspACI	CCGC	7 cut(s)	63, 155, 237, 288, 542, 549, 1040
BspANI	GGCC	4 cut(s)	5, 143, 785, 866
BspCNI	CTCAG	1 cut(s)	355
BspFNI	CGCG	2 cut(s)	228, 621
BspHI	TCATGA	1 cut(s)	798
BspLI	GGNNCC	2 cut(s)	944, 993
BspTNI	GGTCTC	1 cut(s)	249
BsrBI	CCGCTC	2 cut(s)	65, 157
BsrFI	RCCGGY	1 cut(s)	284
BsrGI	TGTACA	1 cut(s)	879
BsrI	ACTGG	5 cut(s)	12, 397, 642, 648, 861
BssAI	RCCGGY	1 cut(s)	284
BssECI	CCNNGG	6 cut(s)	93, 303, 371, 441, 630, 896
BssMI	GATC	7 cut(s)	162, 198, 267, 467, 523, 967, 1023
BssT1I	CCWWGG	3 cut(s)	441, 630, 896
Bst2UI	CCWGG	2 cut(s)	185, 782
Bst4CI	ACNGT	3 cut(s)	609, 893, 913
BstAPI	GCANNNNNTGC	1 cut(s)	322
BstAUI	TGTACA	1 cut(s)	879
BstC8I	GCNNGC	2 cut(s)	237, 286
BstDEI	CTNAG	1 cut(s)	363
BstDSI	CCRYGG	4 cut(s)	303, 371, 441, 630
BstEII	GGTNACC	1 cut(s)	187
BstF5I	GGATG	1 cut(s)	180
BstFNI	CGCG	2 cut(s)	228, 621
BstHHI	GCGC	1 cut(s)	230
BstKTI	GATC	7 cut(s)	165, 201, 270, 470, 526, 970, 1026
BstMAI	GTCTC	2 cut(s)	64, 249
BstMBI	GATC	7 cut(s)	162, 198, 267, 467, 523, 967, 1023
BstMCI	CGRYCG	1 cut(s)	253
BstMWI	GCNNNNNNNGC	8 cut(s)	105, 236, 241, 285, 322, 459, 935, 1082
BstNI	CCWGG	2 cut(s)	185, 782
BstNSI	RCATGY	2 cut(s)	343, 1066
BstPI	GGTNACC	1 cut(s)	187
BstSCI	CCNGG	3 cut(s)	183, 780, 938
BstSLI	GKGCMC	1 cut(s)	237
BstUI	CGCG	2 cut(s)	228, 621
BstV1I	GCAGC	3 cut(s)	496, 712, 1020
BstX2I	RGATCY	1 cut(s)	467
BstXI	CCANNNNNNTGG	1 cut(s)	637
BstYI	RGATCY	1 cut(s)	467
BsuRI	GGCC	4 cut(s)	5, 143, 785, 866
BtgI	CCRYGG	4 cut(s)	303, 371, 441, 630
BtgZI	GCGATG	1 cut(s)	114
BtsCI	GGATG	1 cut(s)	180
BtsIMutI	CAGTG	2 cut(s)	390, 854
Cac8I	GCNNGC	2 cut(s)	237, 286
CciI	TCATGA	1 cut(s)	798
CfoI	GCGC	1 cut(s)	230
Cfr10I	RCCGGY	1 cut(s)	284
Cfr13I	GGNCC	1 cut(s)	992
Csp6I	GTAC	4 cut(s)	29, 635, 790, 880
CviQI	GTAC	4 cut(s)	29, 635, 790, 880
DdeI	CTNAG	1 cut(s)	363
DpnI	GATC	7 cut(s)	164, 200, 269, 469, 525, 969, 1025
DpnII	GATC	7 cut(s)	162, 198, 267, 467, 523, 967, 1023
EaeI	YGGCCR	2 cut(s)	3, 864
EciI	GGCGGA	1 cut(s)	564
Eco130I	CCWWGG	3 cut(s)	441, 630, 896
Eco24I	GRGCYC	1 cut(s)	945
Eco31I	GGTCTC	1 cut(s)	249
Eco32I	GATATC	1 cut(s)	90
Eco47I	GGWCC	1 cut(s)	992
Eco57I	CTGAAG	1 cut(s)	918
Eco91I	GGTNACC	1 cut(s)	187
EcoO65I	GGTNACC	1 cut(s)	187
EcoRII	CCWGG	2 cut(s)	183, 780
EcoRV	GATATC	1 cut(s)	90
EcoT14I	CCWWGG	3 cut(s)	441, 630, 896
EcoT38I	GRGCYC	1 cut(s)	945
ErhI	CCWWGG	3 cut(s)	441, 630, 896
Esp3I	CGTCTC	1 cut(s)	64
FaqI	GGGAC	1 cut(s)	774
FauI	CCCGC	2 cut(s)	244, 535
Fnu4HI	GCNGC	5 cut(s)	155, 289, 510, 726, 1009
FokI	GGATG	1 cut(s)	167
FriOI	GRGCYC	1 cut(s)	945
Fsp4HI	GCNGC	5 cut(s)	155, 289, 510, 726, 1009
FspBI	CTAG	1 cut(s)	450
GlaI	GCGC	1 cut(s)	229
GluI	GCNGC	5 cut(s)	155, 289, 510, 726, 1009
GsuI	CTGGAG	2 cut(s)	764, 1004
HaeIII	GGCC	4 cut(s)	5, 143, 785, 866
HapII	CCGG	5 cut(s)	144, 285, 326, 477, 939
HhaI	GCGC	1 cut(s)	230
Hin6I	GCGC	1 cut(s)	228
HinP1I	GCGC	1 cut(s)	228
HincII	GTYRAC	1 cut(s)	487
HindII	GTYRAC	1 cut(s)	487
HinfI	GANTC	4 cut(s)	110, 329, 437, 599
HpaI	GTTAAC	1 cut(s)	487
HpaII	CCGG	5 cut(s)	144, 285, 326, 477, 939
HphI	GGTGA	2 cut(s)	166, 181
Hpy166II	GTNNAC	4 cut(s)	17, 436, 487, 658
Hpy188I	TCNGA	2 cut(s)	94, 115
Hpy188III	TCNNGA	7 cut(s)	160, 265, 527, 799, 829, 846, 1021
Hpy8I	GTNNAC	4 cut(s)	17, 436, 487, 658
HpyAV	CCTTC	2 cut(s)	746, 799
HpyCH4III	ACNGT	3 cut(s)	609, 893, 913
HpyCH4IV	ACGT	1 cut(s)	318
HpyCH4V	TGCA	7 cut(s)	132, 244, 316, 705, 774, 854, 1003
HpyF10VI	GCNNNNNNNGC	8 cut(s)	105, 236, 241, 285, 322, 459, 935, 1082
HpyF3I	CTNAG	1 cut(s)	363
HpySE526I	ACGT	1 cut(s)	318
HspAI	GCGC	1 cut(s)	228
KroI	GCCGGC	1 cut(s)	284
KroNI	GCCGGC	1 cut(s)	286
KspAI	GTTAAC	1 cut(s)	487
Kzo9I	GATC	7 cut(s)	162, 198, 267, 467, 523, 967, 1023
LmnI	GCTCC	5 cut(s)	146, 479, 686, 948, 1023
Lsp1109I	GCAGC	3 cut(s)	496, 712, 1020
MaeI	CTAG	1 cut(s)	450
MaeII	ACGT	1 cut(s)	318
MaeIII	GTNAC	6 cut(s)	187, 220, 421, 600, 609, 907
MalI	GATC	7 cut(s)	164, 200, 269, 469, 525, 969, 1025
MbiI	CCGCTC	2 cut(s)	65, 157
MboI	GATC	7 cut(s)	162, 198, 267, 467, 523, 967, 1023
MboII	GAAGA	7 cut(s)	34, 37, 814, 814, 817, 924, 962
MfeI	CAATTG	1 cut(s)	663
MflI	RGATCY	1 cut(s)	467
MhlI	GDGCHC	2 cut(s)	237, 945
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	352, 663, 849
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	4 cut(s)	119, 323, 431, 608
MnlI	CCTC	8 cut(s)	44, 65, 84, 88, 187, 511, 584, 956
Mox20I	TGGCCA	1 cut(s)	5
MroNI	GCCGGC	1 cut(s)	284
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	4 cut(s)	486, 585, 711, 1014
MslI	CAYNNNNRTG	2 cut(s)	194, 953
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	5 cut(s)	144, 285, 326, 477, 939
MspR9I	CCNGG	3 cut(s)	185, 782, 940
MunI	CAATTG	1 cut(s)	663
Mva1269I	GAATGC	3 cut(s)	110, 774, 931
MvaI	CCWGG	2 cut(s)	185, 782
MvnI	CGCG	2 cut(s)	228, 621
MwoI	GCNNNNNNNGC	8 cut(s)	105, 236, 241, 285, 322, 459, 935, 1082
NaeI	GCCGGC	1 cut(s)	286
NciI	CCSGG	1 cut(s)	940
NcoI	CCATGG	2 cut(s)	441, 630
NdeII	GATC	7 cut(s)	162, 198, 267, 467, 523, 967, 1023
NgoMIV	GCCGGC	1 cut(s)	284
NlaIV	GGNNCC	2 cut(s)	944, 993
NmeAIII	GCCGAG	1 cut(s)	811
NmuCI	GTSAC	5 cut(s)	187, 220, 421, 600, 609
NspI	RCATGY	2 cut(s)	343, 1066
PagI	TCATGA	1 cut(s)	798
PciI	ACATGT	1 cut(s)	339
PctI	GAATGC	3 cut(s)	110, 774, 931
PdiI	GCCGGC	1 cut(s)	286
PkrI	GCNGC	5 cut(s)	156, 290, 511, 727, 1010
PleI	GAGTC	4 cut(s)	118, 323, 431, 607
PpsI	GAGTC	4 cut(s)	118, 323, 431, 607
PscI	ACATGT	1 cut(s)	339
Psp6I	CCWGG	2 cut(s)	183, 780
PspEI	GGTNACC	1 cut(s)	187
PspGI	CCWGG	2 cut(s)	183, 780
PspN4I	GGNNCC	2 cut(s)	944, 993
PspPI	GGNCC	1 cut(s)	992
PsuI	RGATCY	1 cut(s)	467
RsaI	GTAC	4 cut(s)	30, 636, 791, 881
RsaNI	GTAC	4 cut(s)	29, 635, 790, 880
RseI	CAYNNNNRTG	2 cut(s)	194, 953
SaqAI	TTAA	4 cut(s)	486, 585, 711, 1014
SatI	GCNGC	5 cut(s)	155, 289, 510, 726, 1009
Sau3AI	GATC	7 cut(s)	162, 198, 267, 467, 523, 967, 1023
Sau96I	GGNCC	1 cut(s)	992
ScaI	AGTACT	1 cut(s)	30
SchI	GAGTC	4 cut(s)	119, 323, 431, 608
ScrFI	CCNGG	3 cut(s)	185, 782, 940
SduI	GDGCHC	2 cut(s)	237, 945
SinI	GGWCC	1 cut(s)	992
SmiMI	CAYNNNNRTG	2 cut(s)	194, 953
SmlI	CTYRAG	2 cut(s)	75, 158
SmoI	CTYRAG	2 cut(s)	75, 158
Sse9I	AATT	3 cut(s)	352, 663, 849
SsiI	CCGC	7 cut(s)	63, 155, 237, 288, 542, 549, 1040
SspMI	CTAG	1 cut(s)	450
StyD4I	CCNGG	3 cut(s)	183, 780, 938
StyI	CCWWGG	3 cut(s)	441, 630, 896
TaaI	ACNGT	3 cut(s)	609, 893, 913
TaiI	ACGT	1 cut(s)	321
TaqI	TCGA	4 cut(s)	86, 350, 830, 872
TaqII	GACCGA	1 cut(s)	267
TasI	AATT	3 cut(s)	352, 663, 849
TatI	WGTACW	3 cut(s)	28, 789, 879
TauI	GCSGC	2 cut(s)	157, 291
Tru1I	TTAA	4 cut(s)	486, 585, 711, 1014
Tru9I	TTAA	4 cut(s)	486, 585, 711, 1014
TscAI	CASTG	2 cut(s)	397, 861
TseFI	GTSAC	5 cut(s)	187, 220, 421, 600, 609
TseI	GCWGC	3 cut(s)	509, 725, 1008
Tsp45I	GTSAC	5 cut(s)	187, 220, 421, 600, 609
TspDTI	ATGAA	7 cut(s)	37, 117, 301, 554, 787, 815, 976
TspGWI	ACGGA	1 cut(s)	570
TspRI	CASTG	2 cut(s)	397, 861
VpaK11BI	GGWCC	1 cut(s)	992
XceI	RCATGY	2 cut(s)	343, 1066
XspI	CTAG	1 cut(s)	450
ZrmI	AGTACT	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.