Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0007669

Physical Location & Seq

Genomic Coordinates Reverse (-)

15462014 .. 15463532

Gene Structure 1519 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032462

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGCCACTACTACTTCACTTTCCAAAGTACTCCTCCCAATCTTCGTCATAATCGTCTCCGCACTCATTCCTCAAGCTCATTCGCAATCCGAGAGTGATGAATGCGAGTCTGAAACTACCAACTCCTGCCACGACAATGCAGGAGCTGTGCCACTAAAAATCATAGCCATTGCCTCAATCCTGGTCACCAGCATGATCGACTCTTTTGACATGTTGTCCTCGAATTGTTTGGATGAGAAGCCGTGGCACAAGTTCCCTTTCACTGGATTTTTTGCTATGTTGTCCGCTATTGTGACTATGATGGTGGACTCCATGGCTACTAGCATATACAGCAGGAGATCCAGAGCCGGAGTTAACCCCGATACTGCTGGTGTTGCCGTCATTCAGGGAGATCAAGAGATGGCTGTGGCGGGTGGCGGACATGGACATTTTCATTCACATGATCATCAAGTCAAAGGAGGAAGCGAGCCGCAGCTGTCACGCTATCGCGTTGTTGCCATGGTGTTGGAACTGGGAATTATTGTTCACTCGGTTGTTATCGGGCTTTCTCTTGGAGCTTCAGACAACACTTGCACCATTAAAGGTCTTGTAGCTGCCCTTTGCTTCCATCAAATGTTTGAAGGCATGGGCCTTGGTGGTTGCATTCTCCAGGCTGAGTATAAGTTCATGCAGAAGGCAATAATGGTGTTCTTCTTCTCAGCAACAACCCCATTTGGAATTGCACTGGGAATGGCCATTTCAAAAATGTACAAAGAGAACAGTCCAAGTGCATTAGTGACAGTAGGACTGCTGAATGCTTCTTCAGCTGGGCTGCTCATCTACATGGCTTTGGTTGATCTTCTCTCTGCCGACTTCATGGGTCCAAAGTTGCAACGCAGCATCAAGCTCCAGATCAAGTCTTACATGGCGGTTCTTTTGGGTGCCGGTGGCATGTCTCTGTTGGCAAAATGGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000302 GO:0003674 GO:0005215 GO:0005381 GO:0005385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006829 GO:0006950 GO:0006979 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0012505 GO:0015075 GO:0015318 GO:0015675 GO:0015691 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0031410 GO:0031982 GO:0031984 GO:0032870 GO:0033554 GO:0034220 GO:0034599 GO:0034614 GO:0034755 GO:0035690 GO:0042221 GO:0042493 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0055085 GO:0070838 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0071577 GO:0071731 GO:0071732 GO:0071944 GO:0072509 GO:0072511 GO:0097366 GO:0097708 GO:0098655 GO:0098660 GO:0098662 GO:0098791 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

319

Amino Acids

33.85

Weight (kDa)

6.35

Isoelectric Point (pI)

40.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zip	PF02535	34 - 315	1.7e-62	ZIP Zinc transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007669)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31260 AT4G19690 AT4G19690
fragaria_vesca	FvH4_3g12020
malus_domestica	MD05G1255500.v1.1
prunus_persica	Prupe.4G108400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0019701 RchiOBHm_Chr5g0019711
rosa_laevigata	RLG00000032462 RLG00000032463
rosa_multiflora	Rmu_sc0003325.1_g000008 Rmu_ssc0000062.1_g000007 Rmu_ssc0000062.1_g000017
rosa_roxburghii	Rroxscaffold_1G00058400
rosa_rugosa	Rorug05G0052700 Rorug05G0053300
rosa_samantha	Rh5AG143700 Rh5BG142200 Rh5BG142600 Rh5CG153900 Rh5CG154000 Rh5DG142600 Rh5DG142700
rosa_wichuraiana	Rw5G012720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	920
AccII	CGCG	1 cut(s)	489
AciI	CCGC	6 cut(s)	60, 285, 410, 417, 470, 908
AclWI	GGATC	1 cut(s)	333
AcoI	YGGCCR	2 cut(s)	3, 732
AcuI	CTGAAG	2 cut(s)	543, 786
AfaI	GTAC	2 cut(s)	30, 749
AfiI	CCNNNNNNNGG	1 cut(s)	263
AflIII	ACRYGT	1 cut(s)	210
AgsI	TTSAA	2 cut(s)	620, 741
AhdI	GACNNNNNGTC	1 cut(s)	214
AjnI	CCWGG	2 cut(s)	180, 648
AloI	GAACNNNNNNTCC	2 cut(s)	507, 539
AluBI	AGCT	7 cut(s)	77, 146, 475, 557, 593, 806, 886
AluI	AGCT	7 cut(s)	77, 146, 475, 557, 593, 806, 886
Alw26I	GTCTC	2 cut(s)	61, 939
AlwI	GGATC	1 cut(s)	333
AlwNI	CAGNNNCTG	1 cut(s)	146
AoxI	GGCC	3 cut(s)	3, 628, 732
ApeKI	GCWGC	4 cut(s)	472, 593, 811, 876
AspS9I	GGNCC	2 cut(s)	628, 860
AsuHPI	GGTGA	1 cut(s)	178
AvaII	GGWCC	1 cut(s)	860
BalI	TGGCCA	2 cut(s)	5, 734
BanI	GGYRCC	1 cut(s)	920
BbvI	GCAGC	4 cut(s)	484, 580, 798, 888
BccI	CCATC	3 cut(s)	295, 394, 615
BceAI	ACGGC	2 cut(s)	226, 362
BciT130I	CCWGG	2 cut(s)	182, 650
BclI	TGATCA	1 cut(s)	442
BcoDI	GTCTC	2 cut(s)	61, 939
BfaI	CTAG	1 cut(s)	321
BisI	GCNGC	5 cut(s)	470, 473, 594, 812, 877
BlsI	GCNGC	5 cut(s)	471, 474, 595, 813, 878
BmcAI	AGTACT	1 cut(s)	30
Bme1390I	CCNGG	2 cut(s)	182, 650
Bme18I	GGWCC	1 cut(s)	860
BmeRI	GACNNNNNGTC	1 cut(s)	214
BmgT120I	GGNCC	2 cut(s)	628, 860
BmiI	GGNNCC	2 cut(s)	861, 922
BmrFI	CCNGG	2 cut(s)	182, 650
BmrI	ACTGGG	2 cut(s)	521, 734
BmsI	GCATC	1 cut(s)	888
BmuI	ACTGGG	2 cut(s)	521, 734
BpmI	CTGGAG	2 cut(s)	632, 872
BpuEI	CTTGAG	1 cut(s)	57
BsaJI	CCNNGG	4 cut(s)	242, 312, 498, 631
Bsc4I	CCNNNNNNNGG	1 cut(s)	263
Bse118I	RCCGGY	1 cut(s)	923
Bse1I	ACTGG	3 cut(s)	268, 516, 729
Bse3DI	GCAATG	1 cut(s)	168
BseBI	CCWGG	2 cut(s)	182, 650
BseDI	CCNNGG	4 cut(s)	242, 312, 498, 631
BseGI	GGATG	1 cut(s)	238
BseLI	CCNNNNNNNGG	1 cut(s)	263
BseMI	GCAATG	1 cut(s)	168
BseMII	CTCAG	2 cut(s)	645, 711
BseNI	ACTGG	3 cut(s)	268, 516, 729
BseRI	GAGGAG	1 cut(s)	23
BseXI	GCAGC	4 cut(s)	484, 580, 798, 888
BseYI	CCCAGC	1 cut(s)	806
Bsh1236I	CGCG	1 cut(s)	489
BshFI	GGCC	3 cut(s)	5, 630, 734
BshNI	GGYRCC	1 cut(s)	920
BsiSI	CCGG	2 cut(s)	348, 924
BslI	CCNNNNNNNGG	1 cut(s)	263
BsmAI	GTCTC	2 cut(s)	61, 939
BsmBI	CGTCTC	1 cut(s)	61
BsmI	GAATGC	3 cut(s)	107, 642, 799
BsnI	GGCC	3 cut(s)	5, 630, 734
Bsp1407I	TGTACA	1 cut(s)	747
Bsp143I	GATC	6 cut(s)	195, 338, 391, 442, 835, 891
Bsp19I	CCATGG	2 cut(s)	312, 498
BspACI	CCGC	6 cut(s)	60, 285, 410, 417, 470, 908
BspANI	GGCC	3 cut(s)	5, 630, 734
BspCNI	CTCAG	2 cut(s)	646, 710
BspFNI	CGCG	1 cut(s)	489
BspLI	GGNNCC	2 cut(s)	861, 922
BspPI	GGATC	1 cut(s)	333
BspT107I	GGYRCC	1 cut(s)	920
BsrDI	GCAATG	1 cut(s)	168
BsrFI	RCCGGY	1 cut(s)	923
BsrGI	TGTACA	1 cut(s)	747
BsrI	ACTGG	3 cut(s)	268, 516, 729
BssAI	RCCGGY	1 cut(s)	923
BssECI	CCNNGG	4 cut(s)	242, 312, 498, 631
BssMI	GATC	6 cut(s)	195, 338, 391, 442, 835, 891
BssT1I	CCWWGG	3 cut(s)	312, 498, 631
Bst2UI	CCWGG	2 cut(s)	182, 650
Bst4CI	ACNGT	2 cut(s)	761, 781
BstAUI	TGTACA	1 cut(s)	747
BstC8I	GCNNGC	1 cut(s)	467
BstDEI	CTNAG	2 cut(s)	654, 697
BstDSI	CCRYGG	3 cut(s)	242, 312, 498
BstEII	GGTNACC	1 cut(s)	184
BstF5I	GGATG	1 cut(s)	238
BstFNI	CGCG	1 cut(s)	489
BstKTI	GATC	6 cut(s)	198, 341, 394, 445, 838, 894
BstMAI	GTCTC	2 cut(s)	61, 939
BstMBI	GATC	6 cut(s)	195, 338, 391, 442, 835, 891
BstMWI	GCNNNNNNNGC	4 cut(s)	330, 374, 803, 950
BstNI	CCWGG	2 cut(s)	182, 650
BstNSI	RCATGY	2 cut(s)	214, 934
BstPI	GGTNACC	1 cut(s)	184
BstSCI	CCNGG	2 cut(s)	180, 648
BstUI	CGCG	1 cut(s)	489
BstV1I	GCAGC	4 cut(s)	484, 580, 798, 888
BstX2I	RGATCY	1 cut(s)	338
BstXI	CCANNNNNNTGG	1 cut(s)	505
BstYI	RGATCY	1 cut(s)	338
BsuRI	GGCC	3 cut(s)	5, 630, 734
BtgI	CCRYGG	3 cut(s)	242, 312, 498
BtsCI	GGATG	1 cut(s)	238
BtsIMutI	CAGTG	2 cut(s)	261, 722
Cac8I	GCNNGC	1 cut(s)	467
CaiI	CAGNNNCTG	1 cut(s)	146
Cfr10I	RCCGGY	1 cut(s)	923
Cfr13I	GGNCC	2 cut(s)	628, 860
Csp6I	GTAC	2 cut(s)	29, 748
CviQI	GTAC	2 cut(s)	29, 748
DdeI	CTNAG	2 cut(s)	654, 697
DpnI	GATC	6 cut(s)	197, 340, 393, 444, 837, 893
DpnII	GATC	6 cut(s)	195, 338, 391, 442, 835, 891
DriI	GACNNNNNGTC	1 cut(s)	214
EaeI	YGGCCR	2 cut(s)	3, 732
Eam1105I	GACNNNNNGTC	1 cut(s)	214
EciI	GGCGGA	1 cut(s)	432
Eco130I	CCWWGG	3 cut(s)	312, 498, 631
Eco47I	GGWCC	1 cut(s)	860
Eco57I	CTGAAG	2 cut(s)	543, 786
Eco91I	GGTNACC	1 cut(s)	184
EcoO65I	GGTNACC	1 cut(s)	184
EcoRII	CCWGG	2 cut(s)	180, 648
EcoT14I	CCWWGG	3 cut(s)	312, 498, 631
ErhI	CCWWGG	3 cut(s)	312, 498, 631
Esp3I	CGTCTC	1 cut(s)	61
FauI	CCCGC	1 cut(s)	403
FbaI	TGATCA	1 cut(s)	442
Fnu4HI	GCNGC	5 cut(s)	470, 473, 594, 812, 877
FokI	GGATG	1 cut(s)	245
Fsp4HI	GCNGC	5 cut(s)	470, 473, 594, 812, 877
FspBI	CTAG	1 cut(s)	321
GluI	GCNGC	5 cut(s)	470, 473, 594, 812, 877
GsaI	CCCAGC	1 cut(s)	810
GsuI	CTGGAG	2 cut(s)	632, 872
HaeIII	GGCC	3 cut(s)	5, 630, 734
HapII	CCGG	2 cut(s)	348, 924
HincII	GTYRAC	1 cut(s)	355
HindII	GTYRAC	1 cut(s)	355
HinfI	GANTC	3 cut(s)	107, 200, 308
HpaI	GTTAAC	1 cut(s)	355
HpaII	CCGG	2 cut(s)	348, 924
HphI	GGTGA	1 cut(s)	178
Hpy166II	GTNNAC	3 cut(s)	307, 355, 526
Hpy188I	TCNGA	3 cut(s)	91, 112, 562
Hpy188III	TCNNGA	3 cut(s)	342, 395, 889
Hpy8I	GTNNAC	3 cut(s)	307, 355, 526
HpyAV	CCTTC	2 cut(s)	614, 667
HpyCH4III	ACNGT	2 cut(s)	761, 781
HpyCH4V	TGCA	7 cut(s)	140, 573, 642, 670, 722, 770, 871
HpyF10VI	GCNNNNNNNGC	4 cut(s)	330, 374, 803, 950
HpyF3I	CTNAG	2 cut(s)	654, 697
Ksp22I	TGATCA	1 cut(s)	442
KspAI	GTTAAC	1 cut(s)	355
Kzo9I	GATC	6 cut(s)	195, 338, 391, 442, 835, 891
LmnI	GCTCC	3 cut(s)	143, 554, 891
Lsp1109I	GCAGC	4 cut(s)	484, 580, 798, 888
LweI	GCATC	1 cut(s)	888
MaeI	CTAG	1 cut(s)	321
MaeIII	GTNAC	4 cut(s)	184, 292, 477, 775
MalI	GATC	6 cut(s)	197, 340, 393, 444, 837, 893
MboI	GATC	6 cut(s)	195, 338, 391, 442, 835, 891
MboII	GAAGA	5 cut(s)	34, 682, 685, 792, 830
MflI	RGATCY	1 cut(s)	338
MlsI	TGGCCA	2 cut(s)	5, 734
MluCI	AATT	3 cut(s)	223, 516, 717
MluNI	TGGCCA	2 cut(s)	5, 734
MlyI	GAGTC	3 cut(s)	116, 194, 302
MmeI	TCCRAC	1 cut(s)	486
MnlI	CCTC	5 cut(s)	44, 81, 184, 229, 452
Mox20I	TGGCCA	2 cut(s)	5, 734
MscI	TGGCCA	2 cut(s)	5, 734
MseI	TTAA	3 cut(s)	354, 579, 955
MslI	CAYNNNNRTG	4 cut(s)	135, 191, 438, 821
Msp20I	TGGCCA	2 cut(s)	5, 734
MspA1I	CMGCKG	2 cut(s)	475, 806
MspI	CCGG	2 cut(s)	348, 924
MspR9I	CCNGG	2 cut(s)	182, 650
Mva1269I	GAATGC	3 cut(s)	107, 642, 799
MvaI	CCWGG	2 cut(s)	182, 650
MvnI	CGCG	1 cut(s)	489
MwoI	GCNNNNNNNGC	4 cut(s)	330, 374, 803, 950
NcoI	CCATGG	2 cut(s)	312, 498
NdeII	GATC	6 cut(s)	195, 338, 391, 442, 835, 891
NlaIV	GGNNCC	2 cut(s)	861, 922
NmuCI	GTSAC	4 cut(s)	184, 292, 477, 775
NspI	RCATGY	2 cut(s)	214, 934
PciI	ACATGT	1 cut(s)	210
PcsI	WCGNNNNNNNCGW	1 cut(s)	51
PctI	GAATGC	3 cut(s)	107, 642, 799
PkrI	GCNGC	5 cut(s)	471, 474, 595, 813, 878
PleI	GAGTC	3 cut(s)	115, 194, 302
PpsI	GAGTC	3 cut(s)	115, 194, 302
PscI	ACATGT	1 cut(s)	210
Psp6I	CCWGG	2 cut(s)	180, 648
PspEI	GGTNACC	1 cut(s)	184
PspFI	CCCAGC	1 cut(s)	806
PspGI	CCWGG	2 cut(s)	180, 648
PspN4I	GGNNCC	2 cut(s)	861, 922
PspPI	GGNCC	2 cut(s)	628, 860
PstNI	CAGNNNCTG	1 cut(s)	146
PsuI	RGATCY	1 cut(s)	338
PvuII	CAGCTG	2 cut(s)	475, 806
RsaI	GTAC	2 cut(s)	30, 749
RsaNI	GTAC	2 cut(s)	29, 748
RseI	CAYNNNNRTG	4 cut(s)	135, 191, 438, 821
SaqAI	TTAA	3 cut(s)	354, 579, 955
SatI	GCNGC	5 cut(s)	470, 473, 594, 812, 877
Sau3AI	GATC	6 cut(s)	195, 338, 391, 442, 835, 891
Sau96I	GGNCC	2 cut(s)	628, 860
ScaI	AGTACT	1 cut(s)	30
SchI	GAGTC	3 cut(s)	116, 194, 302
ScrFI	CCNGG	2 cut(s)	182, 650
SetI	ASST	8 cut(s)	79, 148, 477, 559, 586, 595, 808, 888
SfaNI	GCATC	1 cut(s)	888
SinI	GGWCC	1 cut(s)	860
SmiMI	CAYNNNNRTG	4 cut(s)	135, 191, 438, 821
SmlI	CTYRAG	1 cut(s)	72
SmoI	CTYRAG	1 cut(s)	72
Sse9I	AATT	3 cut(s)	223, 516, 717
SsiI	CCGC	6 cut(s)	60, 285, 410, 417, 470, 908
SspMI	CTAG	1 cut(s)	321
StyD4I	CCNGG	2 cut(s)	180, 648
StyI	CCWWGG	3 cut(s)	312, 498, 631
TaaI	ACNGT	2 cut(s)	761, 781
TaqI	TCGA	2 cut(s)	198, 221
TasI	AATT	3 cut(s)	223, 516, 717
TatI	WGTACW	2 cut(s)	28, 747
TauI	GCSGC	1 cut(s)	472
Tru1I	TTAA	3 cut(s)	354, 579, 955
Tru9I	TTAA	3 cut(s)	354, 579, 955
TscAI	CASTG	2 cut(s)	268, 729
TseFI	GTSAC	4 cut(s)	184, 292, 477, 775
TseI	GCWGC	4 cut(s)	472, 593, 811, 876
Tsp45I	GTSAC	4 cut(s)	184, 292, 477, 775
TspDTI	ATGAA	4 cut(s)	114, 422, 655, 844
TspRI	CASTG	2 cut(s)	268, 729
VpaK11BI	GGWCC	1 cut(s)	860
XceI	RCATGY	2 cut(s)	214, 934
XspI	CTAG	1 cut(s)	321
ZrmI	AGTACT	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.