Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000062.1

Orthogroup ID

OG0007669

Physical Location & Seq

Genomic Coordinates Reverse (-)

42166 .. 42651

Gene Structure 486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000062.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

atggccactactacttcactttccaaagtactcctcccaatcttcgtcataatcctcgtctccgcactcattcctcaagctcattcgcaatccgagagtgatgaatgcgagtctgaaactaccaactcctgccacgacaaggcaggagctgtgccactcaaaatcatagccattgcctcaatcctggtcaccagcatgataggtgtgtccttgccactcgtcactcgcaccatacccgccttgcatcccgatcgagacatattcgtggtcgtcaagtgctttgccggtggcattattcttggcacggggttcatgcacgttttgccagactcttttgacatgttgtcctcgaattgtttggatgagaagccgtggcacaagttccctttcactggattttttgctatgttgtccgctattgtgactatgatggtggactccatggctactaccatatacagcaggagatccagagcccggagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000302 GO:0003674 GO:0005215 GO:0005381 GO:0005385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006829 GO:0006950 GO:0006979 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0012505 GO:0015075 GO:0015318 GO:0015675 GO:0015691 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0031410 GO:0031982 GO:0031984 GO:0032870 GO:0033554 GO:0034220 GO:0034599 GO:0034614 GO:0034755 GO:0035690 GO:0042221 GO:0042493 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0055085 GO:0070838 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0071577 GO:0071731 GO:0071732 GO:0071944 GO:0072509 GO:0072511 GO:0097366 GO:0097708 GO:0098655 GO:0098660 GO:0098662 GO:0098791 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

161

Amino Acids

17.45

Weight (kDa)

6.49

Isoelectric Point (pI)

51.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007669)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31260 AT4G19690 AT4G19690
fragaria_vesca	FvH4_3g12020
malus_domestica	MD05G1255500.v1.1
prunus_persica	Prupe.4G108400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0019701 RchiOBHm_Chr5g0019711
rosa_laevigata	RLG00000032462 RLG00000032463
rosa_multiflora	Rmu_sc0003325.1_g000008 Rmu_ssc0000062.1_g000007 Rmu_ssc0000062.1_g000017
rosa_roxburghii	Rroxscaffold_1G00058400
rosa_rugosa	Rorug05G0052700 Rorug05G0053300
rosa_samantha	Rh5AG143700 Rh5BG142200 Rh5BG142600 Rh5CG153900 Rh5CG154000 Rh5DG142600 Rh5DG142700
rosa_wichuraiana	Rw5G012720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	63, 237, 414
AclWI	GGATC	1 cut(s)	462
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	1 cut(s)	30
AfiI	CCNNNNNNNGG	3 cut(s)	139, 392, 477
AflIII	ACRYGT	1 cut(s)	339
AhdI	GACNNNNNGTC	1 cut(s)	343
AjnI	CCWGG	1 cut(s)	183
AluBI	AGCT	2 cut(s)	80, 149
AluI	AGCT	2 cut(s)	80, 149
Alw26I	GTCTC	2 cut(s)	64, 249
AlwI	GGATC	1 cut(s)	462
AlwNI	CAGNNNCTG	1 cut(s)	149
AoxI	GGCC	1 cut(s)	3
AsuC2I	CCSGG	1 cut(s)	478
AsuHPI	GGTGA	1 cut(s)	181
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	478
BccI	CCATC	1 cut(s)	424
BceAI	ACGGC	1 cut(s)	355
BcgI	CGANNNNNNTGC	2 cut(s)	233, 267
BciT130I	CCWGG	1 cut(s)	185
BcnI	CCSGG	1 cut(s)	478
BcoDI	GTCTC	2 cut(s)	64, 249
BmcAI	AGTACT	1 cut(s)	30
Bme1390I	CCNGG	2 cut(s)	185, 478
BmeRI	GACNNNNNGTC	1 cut(s)	343
BmrFI	CCNGG	2 cut(s)	185, 478
BmsI	GCATC	1 cut(s)	253
BpuEI	CTTGAG	1 cut(s)	60
BpuMI	CCSGG	1 cut(s)	478
BsaJI	CCNNGG	2 cut(s)	371, 441
Bsc4I	CCNNNNNNNGG	3 cut(s)	139, 392, 477
Bse118I	RCCGGY	1 cut(s)	284
Bse1I	ACTGG	1 cut(s)	397
Bse3DI	GCAATG	1 cut(s)	171
BseBI	CCWGG	1 cut(s)	185
BseDI	CCNNGG	2 cut(s)	371, 441
BseGI	GGATG	2 cut(s)	244, 367
BseLI	CCNNNNNNNGG	3 cut(s)	139, 392, 477
BseMI	GCAATG	1 cut(s)	171
BseNI	ACTGG	1 cut(s)	397
BseRI	GAGGAG	1 cut(s)	23
Bsh1285I	CGRYCG	1 cut(s)	253
BshFI	GGCC	1 cut(s)	5
BsiEI	CGRYCG	1 cut(s)	253
BsiSI	CCGG	2 cut(s)	285, 478
BslI	CCNNNNNNNGG	3 cut(s)	139, 392, 477
BsmAI	GTCTC	2 cut(s)	64, 249
BsmBI	CGTCTC	1 cut(s)	64
BsmI	GAATGC	1 cut(s)	110
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	478
Bsp143I	GATC	2 cut(s)	250, 467
Bsp19I	CCATGG	1 cut(s)	441
BspACI	CCGC	3 cut(s)	63, 237, 414
BspANI	GGCC	1 cut(s)	5
BspPI	GGATC	1 cut(s)	462
BsrDI	GCAATG	1 cut(s)	171
BsrFI	RCCGGY	1 cut(s)	284
BsrI	ACTGG	1 cut(s)	397
BssAI	RCCGGY	1 cut(s)	284
BssECI	CCNNGG	2 cut(s)	371, 441
BssMI	GATC	2 cut(s)	250, 467
BssT1I	CCWWGG	1 cut(s)	441
Bst2UI	CCWGG	1 cut(s)	185
BstAPI	GCANNNNNTGC	1 cut(s)	322
BstDSI	CCRYGG	2 cut(s)	371, 441
BstEII	GGTNACC	1 cut(s)	187
BstF5I	GGATG	2 cut(s)	244, 367
BstKTI	GATC	2 cut(s)	253, 470
BstMAI	GTCTC	2 cut(s)	64, 249
BstMBI	GATC	2 cut(s)	250, 467
BstMCI	CGRYCG	1 cut(s)	253
BstMWI	GCNNNNNNNGC	1 cut(s)	322
BstNI	CCWGG	1 cut(s)	185
BstNSI	RCATGY	1 cut(s)	343
BstPI	GGTNACC	1 cut(s)	187
BstSCI	CCNGG	2 cut(s)	183, 476
BstX2I	RGATCY	1 cut(s)	467
BstYI	RGATCY	1 cut(s)	467
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	2 cut(s)	371, 441
BtsCI	GGATG	2 cut(s)	244, 367
BtsIMutI	CAGTG	1 cut(s)	390
CaiI	CAGNNNCTG	1 cut(s)	149
Cfr10I	RCCGGY	1 cut(s)	284
Csp6I	GTAC	1 cut(s)	29
CviAII	CATG	4 cut(s)	196, 313, 340, 442
CviJI	RGCY	7 cut(s)	5, 80, 149, 170, 370, 446, 476
CviKI_1	RGCY	7 cut(s)	5, 80, 149, 170, 370, 446, 476
CviQI	GTAC	1 cut(s)	29
DpnI	GATC	2 cut(s)	252, 469
DpnII	GATC	2 cut(s)	250, 467
DriI	GACNNNNNGTC	1 cut(s)	343
EaeI	YGGCCR	1 cut(s)	3
Eam1105I	GACNNNNNGTC	1 cut(s)	343
Eco130I	CCWWGG	1 cut(s)	441
Eco24I	GRGCYC	1 cut(s)	478
Eco91I	GGTNACC	1 cut(s)	187
EcoO65I	GGTNACC	1 cut(s)	187
EcoRII	CCWGG	1 cut(s)	183
EcoT14I	CCWWGG	1 cut(s)	441
EcoT38I	GRGCYC	1 cut(s)	478
ErhI	CCWWGG	1 cut(s)	441
Esp3I	CGTCTC	1 cut(s)	64
FaeI	CATG	4 cut(s)	199, 316, 343, 445
FatI	CATG	4 cut(s)	195, 312, 339, 441
FauI	CCCGC	1 cut(s)	244
FokI	GGATG	2 cut(s)	231, 374
FriOI	GRGCYC	1 cut(s)	478
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	285, 478
Hin1II	CATG	4 cut(s)	199, 316, 343, 445
HinfI	GANTC	3 cut(s)	110, 329, 437
HpaII	CCGG	2 cut(s)	285, 478
HphI	GGTGA	1 cut(s)	181
Hpy166II	GTNNAC	1 cut(s)	436
Hpy188I	TCNGA	2 cut(s)	94, 115
Hpy188III	TCNNGA	3 cut(s)	248, 254, 471
Hpy8I	GTNNAC	1 cut(s)	436
HpyCH4IV	ACGT	1 cut(s)	318
HpyCH4V	TGCA	2 cut(s)	244, 316
HpyF10VI	GCNNNNNNNGC	1 cut(s)	322
HpySE526I	ACGT	1 cut(s)	318
Hsp92II	CATG	4 cut(s)	199, 316, 343, 445
Kzo9I	GATC	2 cut(s)	250, 467
LmnI	GCTCC	1 cut(s)	146
LpnPI	CCDG	9 cut(s)	129, 142, 170, 197, 205, 298, 339, 378, 448
LweI	GCATC	1 cut(s)	253
MaeII	ACGT	1 cut(s)	318
MaeIII	GTNAC	3 cut(s)	187, 220, 421
MalI	GATC	2 cut(s)	252, 469
MboI	GATC	2 cut(s)	250, 467
MboII	GAAGA	1 cut(s)	34
MflI	RGATCY	1 cut(s)	467
MhlI	GDGCHC	1 cut(s)	478
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	352
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	119, 323, 431
MnlI	CCTC	5 cut(s)	44, 65, 84, 187, 358
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	484
MslI	CAYNNNNRTG	2 cut(s)	194, 263
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	285, 478
MspR9I	CCNGG	2 cut(s)	185, 478
Mva1269I	GAATGC	1 cut(s)	110
MvaI	CCWGG	1 cut(s)	185
MwoI	GCNNNNNNNGC	1 cut(s)	322
NciI	CCSGG	1 cut(s)	478
NcoI	CCATGG	1 cut(s)	441
NdeII	GATC	2 cut(s)	250, 467
NlaIII	CATG	4 cut(s)	199, 316, 343, 445
NmuCI	GTSAC	3 cut(s)	187, 220, 421
NspI	RCATGY	1 cut(s)	343
PciI	ACATGT	1 cut(s)	339
PctI	GAATGC	1 cut(s)	110
Ple19I	CGATCG	1 cut(s)	253
PleI	GAGTC	3 cut(s)	118, 323, 431
PpsI	GAGTC	3 cut(s)	118, 323, 431
PscI	ACATGT	1 cut(s)	339
Psp6I	CCWGG	1 cut(s)	183
PspEI	GGTNACC	1 cut(s)	187
PspGI	CCWGG	1 cut(s)	183
PstNI	CAGNNNCTG	1 cut(s)	149
PsuI	RGATCY	1 cut(s)	467
PvuI	CGATCG	1 cut(s)	253
RsaI	GTAC	1 cut(s)	30
RsaNI	GTAC	1 cut(s)	29
RseI	CAYNNNNRTG	2 cut(s)	194, 263
SaqAI	TTAA	1 cut(s)	484
Sau3AI	GATC	2 cut(s)	250, 467
ScaI	AGTACT	1 cut(s)	30
SchI	GAGTC	3 cut(s)	119, 323, 431
ScrFI	CCNGG	2 cut(s)	185, 478
SduI	GDGCHC	1 cut(s)	478
SetI	ASST	4 cut(s)	82, 151, 205, 321
SfaNI	GCATC	1 cut(s)	253
SmiMI	CAYNNNNRTG	2 cut(s)	194, 263
SmlI	CTYRAG	1 cut(s)	75
SmoI	CTYRAG	1 cut(s)	75
Sse9I	AATT	1 cut(s)	352
SsiI	CCGC	3 cut(s)	63, 237, 414
StyD4I	CCNGG	2 cut(s)	183, 476
StyI	CCWWGG	1 cut(s)	441
TaiI	ACGT	1 cut(s)	321
TaqI	TCGA	2 cut(s)	253, 350
TasI	AATT	1 cut(s)	352
TatI	WGTACW	1 cut(s)	28
Tru1I	TTAA	1 cut(s)	484
Tru9I	TTAA	1 cut(s)	484
TscAI	CASTG	1 cut(s)	397
TseFI	GTSAC	3 cut(s)	187, 220, 421
Tsp45I	GTSAC	3 cut(s)	187, 220, 421
TspDTI	ATGAA	2 cut(s)	117, 301
TspRI	CASTG	1 cut(s)	397
XceI	RCATGY	1 cut(s)	343
ZrmI	AGTACT	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.