Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0007669

Physical Location & Seq

Genomic Coordinates Reverse (-)

5668145 .. 5669820

Gene Structure 1676 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G108400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGGCCACCAAGTCACATTTGAAGCTCACCCCAATTATCTTCATCATCTTCATCTCCATTCTCACTCCCCAAGTCCATTCAGAGTCTGATGAATGCGGCTCAGAAACCAACTCCTGCAATGACAAGTCTGGAGCTGTGCCGCTCAAAGTCATAGCCATCACCACAATTTTGGTCACGAGCATGATCGGGGTGTCCTTGCCTCTTGTTACTCGTTCGATACCCGCGTTGCACCCCGATCGAAACCTGTTTGTGATTGTCAAGTGCTTTGCAGCCGGCATCATCCTTGCCACGGGGTTCATGCACGTCTTGCCTGATTCTTTTGACATGTTATCATCCAACTGTTTGAAAGAAAACCCGTGGCACAAGTTTCCTTTCTCAGGGTTTGTGGCTATGCTCTCTGCAATTGTGACTTTGATGGTGGATTCTATGGCCACTAGTATTTATAGCAAGAGATGCAGAACTGGAGTTATCCCAGATAATGGGACGGTTGCAGCCGTTGAGGTGGACCAAGAGATGGCTGCAGTGGGTGCTGGGCATGGTCATTTTCATGCTCACAGTCATGACATAGTCAAGGGAGGAAATGAAGACTCACAGCTTCCCCGTTATCGCGTTGTTGCCATGGTATTAGAACTGGGTATCATTGTTCACTCAGTTGTTATTGGGCTTTCTCTTGGAGCATCAAACAACACTTGCACAATTAAAGGTCTTGTAGCTGCCCTTTGCTTCCATCAAATGTTTGAAGGCATGGGTCTTGGTGGTTGCATTCTCCAGGCCGAGTACAAGTTCATGAAGAAGGCAATCATGGTGTTCTTCTTCTCAACAACAACCCCATTCGGAATTGCAATCGGAATGGCCCTTACAAAATCATACAAAGAAAATAGTCCAAGGTCGCTAATCACAGTAGGGCTGCTCAATGCATCCTCAGCTGGCCTTCTTATCTACATGGCTCTGGTTGATCTTCTTGCTGCTGACTTCATGGGTCCAAAGTTGCAGCGTAGCATCAAGCTCCAGATCAAATCTTACATGGCGGTCCTTTTGGGTGCAGGTGGCATGTCTGTATTGGCAAAATGGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000302 GO:0003674 GO:0005215 GO:0005381 GO:0005385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006829 GO:0006950 GO:0006979 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0012505 GO:0015075 GO:0015318 GO:0015675 GO:0015691 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0031410 GO:0031982 GO:0031984 GO:0032870 GO:0033554 GO:0034220 GO:0034599 GO:0034614 GO:0034755 GO:0035690 GO:0042221 GO:0042493 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0055085 GO:0070838 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0071577 GO:0071731 GO:0071732 GO:0071944 GO:0072509 GO:0072511 GO:0097366 GO:0097708 GO:0098655 GO:0098660 GO:0098662 GO:0098791 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

359

Amino Acids

38.33

Weight (kDa)

8.57

Isoelectric Point (pI)

30.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007669)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31260 AT4G19690 AT4G19690
fragaria_vesca	FvH4_3g12020
malus_domestica	MD05G1255500.v1.1
prunus_persica	Prupe.4G108400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0019701 RchiOBHm_Chr5g0019711
rosa_laevigata	RLG00000032462 RLG00000032463
rosa_multiflora	Rmu_sc0003325.1_g000008 Rmu_ssc0000062.1_g000007 Rmu_ssc0000062.1_g000017
rosa_roxburghii	Rroxscaffold_1G00058400
rosa_rugosa	Rorug05G0052700 Rorug05G0053300
rosa_samantha	Rh5AG143700 Rh5BG142200 Rh5BG142600 Rh5CG153900 Rh5CG154000 Rh5DG142600 Rh5DG142700
rosa_wichuraiana	Rw5G012720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1034
Acc36I	ACCTGC	1 cut(s)	1034
AccB7I	CCANNNNNTGG	2 cut(s)	479, 514
AccBSI	CCGCTC	1 cut(s)	142
AccII	CGCG	2 cut(s)	224, 609
AciI	CCGC	4 cut(s)	96, 140, 222, 1028
AcoI	YGGCCR	2 cut(s)	3, 429
AfaI	GTAC	1 cut(s)	779
AfiI	CCNNNNNNNGG	4 cut(s)	289, 377, 479, 514
AflIII	ACRYGT	1 cut(s)	324
AgsI	TTSAA	3 cut(s)	22, 346, 740
AhlI	ACTAGT	1 cut(s)	434
AjiI	CACGTC	1 cut(s)	304
AjnI	CCWGG	1 cut(s)	768
AluBI	AGCT	6 cut(s)	25, 134, 595, 713, 926, 1006
AluI	AGCT	6 cut(s)	25, 134, 595, 713, 926, 1006
AlwNI	CAGNNNCTG	1 cut(s)	86
AoxI	GGCC	5 cut(s)	3, 429, 771, 852, 928
ApeKI	GCWGC	7 cut(s)	269, 491, 518, 713, 907, 965, 991
AspS9I	GGNCC	4 cut(s)	505, 853, 980, 1030
AsuHPI	GGTGA	2 cut(s)	19, 151
AvaII	GGWCC	3 cut(s)	505, 980, 1030
BaeI	ACNNNNGTAYC	2 cut(s)	209, 242
BalI	TGGCCA	2 cut(s)	5, 431
BauI	CACGAG	1 cut(s)	175
BbsI	GAAGAC	1 cut(s)	591
BbvCI	CCTCAGC	1 cut(s)	922
BbvI	GCAGC	7 cut(s)	281, 503, 505, 700, 894, 952, 1003
BccI	CCATC	4 cut(s)	164, 409, 508, 735
BceAI	ACGGC	1 cut(s)	479
BcgI	CGANNNNNNTGC	2 cut(s)	218, 252
BciT130I	CCWGG	1 cut(s)	770
BcuI	ACTAGT	1 cut(s)	434
BfaI	CTAG	1 cut(s)	435
BfmI	CTRYAG	1 cut(s)	519
BfuAI	ACCTGC	1 cut(s)	1034
BisI	GCNGC	9 cut(s)	97, 140, 270, 492, 519, 714, 908, 966, 992
BlsI	GCNGC	9 cut(s)	98, 141, 271, 493, 520, 715, 909, 967, 993
Bme1390I	CCNGG	1 cut(s)	770
Bme18I	GGWCC	3 cut(s)	505, 980, 1030
BmgBI	CACGTC	1 cut(s)	304
BmgT120I	GGNCC	4 cut(s)	505, 853, 980, 1030
BmiI	GGNNCC	1 cut(s)	981
BmrFI	CCNGG	1 cut(s)	770
BmrI	ACTGGG	1 cut(s)	641
BmsI	GCATC	5 cut(s)	285, 443, 686, 926, 1008
BmuI	ACTGGG	1 cut(s)	641
BpiI	GAAGAC	1 cut(s)	591
BpmI	CTGGAG	4 cut(s)	150, 483, 752, 992
Bpu10I	CCTNAGC	1 cut(s)	922
BsaJI	CCNNGG	4 cut(s)	288, 356, 618, 884
Bsc4I	CCNNNNNNNGG	4 cut(s)	289, 377, 479, 514
Bse118I	RCCGGY	1 cut(s)	272
Bse1I	ACTGG	2 cut(s)	466, 636
Bse3DI	GCAATG	1 cut(s)	124
BseBI	CCWGG	1 cut(s)	770
BseDI	CCNNGG	4 cut(s)	288, 356, 618, 884
BseGI	GGATG	3 cut(s)	279, 332, 917
BseLI	CCNNNNNNNGG	4 cut(s)	289, 377, 479, 514
BseMI	GCAATG	1 cut(s)	124
BseMII	CTCAG	4 cut(s)	114, 390, 663, 936
BseNI	ACTGG	2 cut(s)	466, 636
BseXI	GCAGC	7 cut(s)	281, 503, 505, 700, 894, 952, 1003
BseYI	CCCAGC	1 cut(s)	530
BsgI	GTGCAG	1 cut(s)	1062
Bsh1236I	CGCG	2 cut(s)	224, 609
Bsh1285I	CGRYCG	1 cut(s)	238
BshFI	GGCC	5 cut(s)	5, 431, 773, 854, 930
BsiEI	CGRYCG	1 cut(s)	238
BsiSI	CCGG	1 cut(s)	273
BslFI	GGGAC	1 cut(s)	496
BslI	CCNNNNNNNGG	4 cut(s)	289, 377, 479, 514
BsmFI	GGGAC	1 cut(s)	496
BsmI	GAATGC	2 cut(s)	98, 762
BsnI	GGCC	5 cut(s)	5, 431, 773, 854, 930
Bsp143I	GATC	4 cut(s)	183, 235, 955, 1011
Bsp19I	CCATGG	1 cut(s)	618
BspACI	CCGC	4 cut(s)	96, 140, 222, 1028
BspANI	GGCC	5 cut(s)	5, 431, 773, 854, 930
BspCNI	CTCAG	4 cut(s)	113, 389, 662, 935
BspFNI	CGCG	2 cut(s)	224, 609
BspHI	TCATGA	2 cut(s)	559, 786
BspLI	GGNNCC	1 cut(s)	981
BspMAI	CTGCAG	1 cut(s)	523
BspMI	ACCTGC	1 cut(s)	1034
BsrBI	CCGCTC	1 cut(s)	142
BsrDI	GCAATG	1 cut(s)	124
BsrFI	RCCGGY	1 cut(s)	272
BsrI	ACTGG	2 cut(s)	466, 636
BssAI	RCCGGY	1 cut(s)	272
BssECI	CCNNGG	4 cut(s)	288, 356, 618, 884
BssMI	GATC	4 cut(s)	183, 235, 955, 1011
BssSI	CACGAG	1 cut(s)	175
BssT1I	CCWWGG	2 cut(s)	618, 884
Bst2BI	CACGAG	1 cut(s)	175
Bst2UI	CCWGG	1 cut(s)	770
Bst4CI	ACNGT	4 cut(s)	341, 487, 557, 901
BstAPI	GCANNNNNTGC	3 cut(s)	307, 453, 527
BstC8I	GCNNGC	2 cut(s)	274, 928
BstDEI	CTNAG	4 cut(s)	100, 376, 649, 922
BstDSI	CCRYGG	3 cut(s)	288, 356, 618
BstENI	CCTNNNNNAGG	1 cut(s)	375
BstF5I	GGATG	3 cut(s)	279, 332, 917
BstFNI	CGCG	2 cut(s)	224, 609
BstKTI	GATC	4 cut(s)	186, 238, 958, 1014
BstMBI	GATC	4 cut(s)	183, 235, 955, 1011
BstMCI	CGRYCG	1 cut(s)	238
BstMWI	GCNNNNNNNGC	5 cut(s)	307, 453, 527, 923, 1070
BstNI	CCWGG	1 cut(s)	770
BstNSI	RCATGY	2 cut(s)	328, 1054
BstSCI	CCNGG	1 cut(s)	768
BstSFI	CTRYAG	1 cut(s)	519
BstUI	CGCG	2 cut(s)	224, 609
BstV1I	GCAGC	7 cut(s)	281, 503, 505, 700, 894, 952, 1003
BstV2I	GAAGAC	1 cut(s)	591
BstXI	CCANNNNNNTGG	1 cut(s)	169
BsuRI	GGCC	5 cut(s)	5, 431, 773, 854, 930
BtgI	CCRYGG	3 cut(s)	288, 356, 618
BtrI	CACGTC	1 cut(s)	304
BtsCI	GGATG	3 cut(s)	279, 332, 917
BtsI	GCAGTG	1 cut(s)	528
BtsIMutI	CAGTG	1 cut(s)	528
BveI	ACCTGC	1 cut(s)	1034
Cac8I	GCNNGC	2 cut(s)	274, 928
CaiI	CAGNNNCTG	1 cut(s)	86
CciI	TCATGA	2 cut(s)	559, 786
Cfr10I	RCCGGY	1 cut(s)	272
Cfr13I	GGNCC	4 cut(s)	505, 853, 980, 1030
Csp6I	GTAC	1 cut(s)	778
CviQI	GTAC	1 cut(s)	778
DdeI	CTNAG	4 cut(s)	100, 376, 649, 922
DpnI	GATC	4 cut(s)	185, 237, 957, 1013
DpnII	GATC	4 cut(s)	183, 235, 955, 1011
EaeI	YGGCCR	2 cut(s)	3, 429
Eco130I	CCWWGG	2 cut(s)	618, 884
Eco47I	GGWCC	3 cut(s)	505, 980, 1030
EcoNI	CCTNNNNNAGG	1 cut(s)	375
EcoRII	CCWGG	1 cut(s)	768
EcoT14I	CCWWGG	2 cut(s)	618, 884
EcoT22I	ATGCAT	1 cut(s)	919
ErhI	CCWWGG	2 cut(s)	618, 884
FaqI	GGGAC	1 cut(s)	496
FauI	CCCGC	1 cut(s)	229
Fnu4HI	GCNGC	9 cut(s)	97, 140, 270, 492, 519, 714, 908, 966, 992
FokI	GGATG	3 cut(s)	266, 319, 904
Fsp4HI	GCNGC	9 cut(s)	97, 140, 270, 492, 519, 714, 908, 966, 992
FspBI	CTAG	1 cut(s)	435
GluI	GCNGC	9 cut(s)	97, 140, 270, 492, 519, 714, 908, 966, 992
GsaI	CCCAGC	1 cut(s)	534
GsuI	CTGGAG	4 cut(s)	150, 483, 752, 992
HaeIII	GGCC	5 cut(s)	5, 431, 773, 854, 930
HapII	CCGG	1 cut(s)	273
HinfI	GANTC	4 cut(s)	83, 314, 422, 587
HpaII	CCGG	1 cut(s)	273
HphI	GGTGA	2 cut(s)	19, 151
Hpy166II	GTNNAC	2 cut(s)	505, 646
Hpy188I	TCNGA	5 cut(s)	82, 88, 103, 836, 848
Hpy188III	TCNNGA	5 cut(s)	129, 175, 560, 787, 1009
Hpy8I	GTNNAC	2 cut(s)	505, 646
HpyAV	CCTTC	3 cut(s)	734, 787, 941
HpyCH4III	ACNGT	4 cut(s)	341, 487, 557, 901
HpyCH4IV	ACGT	1 cut(s)	303
HpyF10VI	GCNNNNNNNGC	5 cut(s)	307, 453, 527, 923, 1070
HpyF3I	CTNAG	4 cut(s)	100, 376, 649, 922
HpySE526I	ACGT	1 cut(s)	303
KroI	GCCGGC	1 cut(s)	272
KroNI	GCCGGC	1 cut(s)	274
Kzo9I	GATC	4 cut(s)	183, 235, 955, 1011
LmnI	GCTCC	3 cut(s)	131, 674, 1011
Lsp1109I	GCAGC	7 cut(s)	281, 503, 505, 700, 894, 952, 1003
LweI	GCATC	5 cut(s)	285, 443, 686, 926, 1008
MaeI	CTAG	1 cut(s)	435
MaeII	ACGT	1 cut(s)	303
MaeIII	GTNAC	4 cut(s)	12, 172, 205, 406
MalI	GATC	4 cut(s)	185, 237, 957, 1013
MbiI	CCGCTC	1 cut(s)	142
MboI	GATC	4 cut(s)	183, 235, 955, 1011
MboII	GAAGA	7 cut(s)	31, 40, 596, 802, 802, 805, 950
MfeI	CAATTG	1 cut(s)	402
MlsI	TGGCCA	2 cut(s)	5, 431
MluCI	AATT	5 cut(s)	33, 165, 402, 696, 837
MluNI	TGGCCA	2 cut(s)	5, 431
MlyI	GAGTC	2 cut(s)	92, 581
MmeI	TCCRAC	1 cut(s)	360
MnlI	CCTC	4 cut(s)	210, 493, 569, 931
Mox20I	TGGCCA	2 cut(s)	5, 431
Mph1103I	ATGCAT	1 cut(s)	919
MroNI	GCCGGC	1 cut(s)	272
MscI	TGGCCA	2 cut(s)	5, 431
MseI	TTAA	2 cut(s)	699, 1075
MslI	CAYNNNNRTG	3 cut(s)	179, 546, 558
Msp20I	TGGCCA	2 cut(s)	5, 431
MspA1I	CMGCKG	1 cut(s)	926
MspI	CCGG	1 cut(s)	273
MspR9I	CCNGG	1 cut(s)	770
MunI	CAATTG	1 cut(s)	402
Mva1269I	GAATGC	2 cut(s)	98, 762
MvaI	CCWGG	1 cut(s)	770
MvnI	CGCG	2 cut(s)	224, 609
MwoI	GCNNNNNNNGC	5 cut(s)	307, 453, 527, 923, 1070
NaeI	GCCGGC	1 cut(s)	274
NcoI	CCATGG	1 cut(s)	618
NdeII	GATC	4 cut(s)	183, 235, 955, 1011
NgoMIV	GCCGGC	1 cut(s)	272
NlaIV	GGNNCC	1 cut(s)	981
NmeAIII	GCCGAG	1 cut(s)	799
NmuCI	GTSAC	3 cut(s)	12, 172, 406
NsiI	ATGCAT	1 cut(s)	919
NspI	RCATGY	2 cut(s)	328, 1054
PagI	TCATGA	2 cut(s)	559, 786
PaqCI	CACCTGC	1 cut(s)	1034
PciI	ACATGT	1 cut(s)	324
PcsI	WCGNNNNNNNCGW	1 cut(s)	221
PctI	GAATGC	2 cut(s)	98, 762
PdiI	GCCGGC	1 cut(s)	274
PfeI	GAWTC	2 cut(s)	314, 422
PflFI	GACNNNGTC	1 cut(s)	566
PflMI	CCANNNNNTGG	2 cut(s)	479, 514
PkrI	GCNGC	9 cut(s)	98, 141, 271, 493, 520, 715, 909, 967, 993
Ple19I	CGATCG	1 cut(s)	238
PleI	GAGTC	2 cut(s)	91, 581
PpsI	GAGTC	2 cut(s)	91, 581
PscI	ACATGT	1 cut(s)	324
Psp6I	CCWGG	1 cut(s)	768
PspFI	CCCAGC	1 cut(s)	530
PspGI	CCWGG	1 cut(s)	768
PspN4I	GGNNCC	1 cut(s)	981
PspPI	GGNCC	4 cut(s)	505, 853, 980, 1030
PstI	CTGCAG	1 cut(s)	523
PstNI	CAGNNNCTG	1 cut(s)	86
PsyI	GACNNNGTC	1 cut(s)	566
PvuI	CGATCG	1 cut(s)	238
PvuII	CAGCTG	1 cut(s)	926
RsaI	GTAC	1 cut(s)	779
RsaNI	GTAC	1 cut(s)	778
RseI	CAYNNNNRTG	3 cut(s)	179, 546, 558
SaqAI	TTAA	2 cut(s)	699, 1075
SatI	GCNGC	9 cut(s)	97, 140, 270, 492, 519, 714, 908, 966, 992
Sau3AI	GATC	4 cut(s)	183, 235, 955, 1011
Sau96I	GGNCC	4 cut(s)	505, 853, 980, 1030
SchI	GAGTC	2 cut(s)	92, 581
ScrFI	CCNGG	1 cut(s)	770
SfaNI	GCATC	5 cut(s)	285, 443, 686, 926, 1008
SfcI	CTRYAG	1 cut(s)	519
SinI	GGWCC	3 cut(s)	505, 980, 1030
SmiMI	CAYNNNNRTG	3 cut(s)	179, 546, 558
SpeI	ACTAGT	1 cut(s)	434
Sse9I	AATT	5 cut(s)	33, 165, 402, 696, 837
SsiI	CCGC	4 cut(s)	96, 140, 222, 1028
SspMI	CTAG	1 cut(s)	435
StyD4I	CCNGG	1 cut(s)	768
StyI	CCWWGG	2 cut(s)	618, 884
TaaI	ACNGT	4 cut(s)	341, 487, 557, 901
TaiI	ACGT	1 cut(s)	306
TaqI	TCGA	2 cut(s)	215, 238
TasI	AATT	5 cut(s)	33, 165, 402, 696, 837
TatI	WGTACW	1 cut(s)	777
TauI	GCSGC	2 cut(s)	99, 142
TfiI	GAWTC	2 cut(s)	314, 422
Tru1I	TTAA	2 cut(s)	699, 1075
Tru9I	TTAA	2 cut(s)	699, 1075
TscAI	CASTG	1 cut(s)	528
TseFI	GTSAC	3 cut(s)	12, 172, 406
TseI	GCWGC	7 cut(s)	269, 491, 518, 713, 907, 965, 991
Tsp45I	GTSAC	3 cut(s)	12, 172, 406
TspDTI	ATGAA	9 cut(s)	31, 40, 105, 286, 536, 597, 775, 803, 964
TspRI	CASTG	1 cut(s)	528
Tth111I	GACNNNGTC	1 cut(s)	566
Van91I	CCANNNNNTGG	2 cut(s)	479, 514
VpaK11BI	GGWCC	3 cut(s)	505, 980, 1030
XagI	CCTNNNNNAGG	1 cut(s)	375
XceI	RCATGY	2 cut(s)	328, 1054
XspI	CTAG	1 cut(s)	435
Zsp2I	ATGCAT	1 cut(s)	919

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.