Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0007669

Physical Location & Seq

Genomic Coordinates Forward (+)

38651496 .. 38653384

Gene Structure 1889 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1255500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGCTGCCACCAAGTCACATTTGAAGCTCATCCCAATTATTTTCTTCATCCTAATTATCTCCATCCTCACCCCCAAAGCTTATTCACAGTCTGATGAGGACGAGTGCAGCACTGAAAACACCTCCTCCTGCAATGACAAGTCAGGTGCTGTGCCCCTCAAAATCATAGCCCTTGTATCAATTCTAGTCACAAGCATGATTGGAGTGAGCTTCCCTCTTGTCACTCGTTCCATACCAGCCTTCCACCCCGATCGAAACCTCTTCGTGATCGTCAAGTGCTTTGCAGGTGGCATCATTCTTGCCACTGGTTTCATGCACGTTTTGCCTGATTCATATGCCATGTTACAATCTAGTTGTTTAAAAGAAAATCCATGGCACAAGTTCCCTTTTTCTGGCTTTGTGGCTATGTTGTCTGCAATTCTGACTTTAATGGTGGACTCTATGGCCACTAGCATATACAGTAGGAGATGTAGAACTGGAGTTATCCCAGATAATGGTGAAACTCCAGCCCCGGAGGTAGACCAAGAGATGGCTGTGGTGGGTGCTGGGCATGGCCATTTTCATGCACACAACCATGTTGTTGACAAGGGAGAAAACGGAGACTCGCAACAGCTGTCCCGTTATCGTGTTGTTGCCATGGTATTAGAACTGGGTATCATTGTCCATTCAGTTGTTATAGGGCTTTCTCTTGGAGCTTCAAACAACACCTGCACAATTAAAGGTCTTGTAGCTGCGCTTTGCTTTCATCAAATGTTTGAAGGCATGGGTCTTGGCGGTTGCATTCTACAGGCTGAGTACAAGTTCATGAAGAAGGCCATAATGGTGTTCTTCTTCTCAACAACGACCCCATTTGGAATTGCAATTGGAATGGCTATGACAAAATCGTACAAAGAAAATAGTCCAAAGTCACTAATCACAGTAGGACTGCTTAATGCATCATCGGCTGGCCTTCTTATCTACATGGCATTGGTTGATCTTCTTGCTGCCGACTTCATGGGTCCAAAGTTGCAACGCAGCATTAAGCTCCAGATCAAATCTTACATTGCAGTTCTTTTGGGTGCAGGTGGCATGTCTATATTGGCAAAGTGGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000302 GO:0003674 GO:0005215 GO:0005381 GO:0005385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006829 GO:0006950 GO:0006979 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0012505 GO:0015075 GO:0015318 GO:0015675 GO:0015691 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0031410 GO:0031982 GO:0031984 GO:0032870 GO:0033554 GO:0034220 GO:0034599 GO:0034614 GO:0034755 GO:0035690 GO:0042221 GO:0042493 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0055085 GO:0070838 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0071577 GO:0071731 GO:0071732 GO:0071944 GO:0072509 GO:0072511 GO:0097366 GO:0097708 GO:0098655 GO:0098660 GO:0098662 GO:0098791 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

365

Amino Acids

39.17

Weight (kDa)

8.55

Isoelectric Point (pI)

37.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zip	PF02535	52 - 361	3.1e-87	ZIP Zinc transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007669)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31260 AT4G19690 AT4G19690
fragaria_vesca	FvH4_3g12020
malus_domestica	MD05G1255500.v1.1
prunus_persica	Prupe.4G108400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0019701 RchiOBHm_Chr5g0019711
rosa_laevigata	RLG00000032462 RLG00000032463
rosa_multiflora	Rmu_sc0003325.1_g000008 Rmu_ssc0000062.1_g000007 Rmu_ssc0000062.1_g000017
rosa_roxburghii	Rroxscaffold_1G00058400
rosa_rugosa	Rorug05G0052700 Rorug05G0053300
rosa_samantha	Rh5AG143700 Rh5BG142200 Rh5BG142600 Rh5CG153900 Rh5CG154000 Rh5DG142600 Rh5DG142700
rosa_wichuraiana	Rw5G012720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	3 cut(s)	275, 716, 1052
Acc36I	ACCTGC	3 cut(s)	275, 716, 1052
AccB7I	CCANNNNNTGG	2 cut(s)	494, 529
AccI	GTMKAC	1 cut(s)	519
AciI	CCGC	1 cut(s)	774
AcoI	YGGCCR	2 cut(s)	444, 553
AfaI	GTAC	2 cut(s)	797, 887
AfiI	CCNNNNNNNGG	3 cut(s)	392, 494, 529
AgsI	TTSAA	3 cut(s)	25, 699, 758
AluBI	AGCT	7 cut(s)	28, 80, 210, 613, 695, 731, 1024
AluI	AGCT	7 cut(s)	28, 80, 210, 613, 695, 731, 1024
Alw26I	GTCTC	1 cut(s)	594
AlwNI	CAGNNNCTG	1 cut(s)	149
AoxI	GGCC	4 cut(s)	444, 553, 813, 946
ApeKI	GCWGC	5 cut(s)	5, 108, 731, 983, 1014
AspLEI	GCGC	1 cut(s)	736
AspS9I	GGNCC	1 cut(s)	998
AsuC2I	CCSGG	1 cut(s)	512
AsuHPI	GGTGA	2 cut(s)	61, 509
AvaII	GGWCC	1 cut(s)	998
BaeGI	GKGCMC	1 cut(s)	156
BalI	TGGCCA	2 cut(s)	446, 555
BbvI	GCAGC	4 cut(s)	120, 718, 970, 1026
BccI	CCATC	2 cut(s)	71, 523
BcnI	CCSGG	1 cut(s)	512
BcoDI	GTCTC	1 cut(s)	594
BfaI	CTAG	3 cut(s)	185, 351, 450
BfmI	CTRYAG	1 cut(s)	785
BfuAI	ACCTGC	3 cut(s)	275, 716, 1052
BisI	GCNGC	5 cut(s)	6, 109, 732, 984, 1015
BlsI	GCNGC	5 cut(s)	7, 110, 733, 985, 1016
Bme1390I	CCNGG	1 cut(s)	512
Bme18I	GGWCC	1 cut(s)	998
BmgT120I	GGNCC	1 cut(s)	998
BmiI	GGNNCC	1 cut(s)	999
BmrFI	CCNGG	1 cut(s)	512
BmrI	ACTGGG	1 cut(s)	659
BmsI	GCATC	2 cut(s)	300, 944
BmuI	ACTGGG	1 cut(s)	659
BplI	GAGNNNNNCTC	2 cut(s)	199, 231
BpmI	CTGGAG	3 cut(s)	489, 498, 1010
BpuMI	CCSGG	1 cut(s)	512
BsaJI	CCNNGG	3 cut(s)	371, 510, 636
BsaXI	ACNNNNNCTCC	2 cut(s)	110, 140
Bsc4I	CCNNNNNNNGG	3 cut(s)	392, 494, 529
Bse1I	ACTGG	3 cut(s)	310, 481, 654
Bse3DI	GCAATG	2 cut(s)	139, 1041
BseDI	CCNNGG	3 cut(s)	371, 510, 636
BseGI	GGATG	3 cut(s)	30, 48, 63
BseLI	CCNNNNNNNGG	3 cut(s)	392, 494, 529
BseMI	GCAATG	2 cut(s)	139, 1041
BseMII	CTCAG	1 cut(s)	783
BseNI	ACTGG	3 cut(s)	310, 481, 654
BseRI	GAGGAG	1 cut(s)	115
BseSI	GKGCMC	1 cut(s)	156
BseXI	GCAGC	4 cut(s)	120, 718, 970, 1026
BseYI	CCCAGC	1 cut(s)	545
BsgI	GTGCAG	3 cut(s)	127, 694, 1080
Bsh1285I	CGRYCG	1 cut(s)	253
BshFI	GGCC	4 cut(s)	446, 555, 815, 948
BsiEI	CGRYCG	1 cut(s)	253
BsiSI	CCGG	1 cut(s)	512
BslFI	GGGAC	1 cut(s)	601
BslI	CCNNNNNNNGG	3 cut(s)	392, 494, 529
BsmAI	GTCTC	1 cut(s)	594
BsmFI	GGGAC	1 cut(s)	601
BsmI	GAATGC	1 cut(s)	780
BsnI	GGCC	4 cut(s)	446, 555, 815, 948
Bsp1286I	GDGCHC	1 cut(s)	156
Bsp143I	GATC	4 cut(s)	250, 267, 973, 1029
Bsp19I	CCATGG	2 cut(s)	371, 636
BspACI	CCGC	1 cut(s)	774
BspANI	GGCC	4 cut(s)	446, 555, 815, 948
BspCNI	CTCAG	1 cut(s)	784
BspHI	TCATGA	1 cut(s)	804
BspLI	GGNNCC	1 cut(s)	999
BspMI	ACCTGC	3 cut(s)	275, 716, 1052
BsrDI	GCAATG	2 cut(s)	139, 1041
BsrI	ACTGG	3 cut(s)	310, 481, 654
BssECI	CCNNGG	3 cut(s)	371, 510, 636
BssMI	GATC	4 cut(s)	250, 267, 973, 1029
BssT1I	CCWWGG	2 cut(s)	371, 636
Bst4CI	ACNGT	3 cut(s)	90, 461, 919
Bst6I	CTCTTC	1 cut(s)	266
BstAPI	GCANNNNNTGC	1 cut(s)	322
BstC8I	GCNNGC	1 cut(s)	946
BstDEI	CTNAG	1 cut(s)	792
BstDSI	CCRYGG	2 cut(s)	371, 636
BstF5I	GGATG	3 cut(s)	30, 48, 63
BstHHI	GCGC	1 cut(s)	736
BstKTI	GATC	4 cut(s)	253, 270, 976, 1032
BstMAI	GTCTC	1 cut(s)	594
BstMBI	GATC	4 cut(s)	250, 267, 973, 1029
BstMCI	CGRYCG	1 cut(s)	253
BstMWI	GCNNNNNNNGC	3 cut(s)	322, 941, 1088
BstNSI	RCATGY	1 cut(s)	1072
BstSCI	CCNGG	1 cut(s)	510
BstSFI	CTRYAG	1 cut(s)	785
BstSLI	GKGCMC	1 cut(s)	156
BstV1I	GCAGC	4 cut(s)	120, 718, 970, 1026
BsuRI	GGCC	4 cut(s)	446, 555, 815, 948
BtgI	CCRYGG	2 cut(s)	371, 636
BtsCI	GGATG	3 cut(s)	30, 48, 63
BtsIMutI	CAGTG	2 cut(s)	111, 303
BveI	ACCTGC	3 cut(s)	275, 716, 1052
Cac8I	GCNNGC	1 cut(s)	946
CaiI	CAGNNNCTG	1 cut(s)	149
CciI	TCATGA	1 cut(s)	804
CfoI	GCGC	1 cut(s)	736
Cfr13I	GGNCC	1 cut(s)	998
Csp6I	GTAC	2 cut(s)	796, 886
CviQI	GTAC	2 cut(s)	796, 886
DdeI	CTNAG	1 cut(s)	792
DpnI	GATC	4 cut(s)	252, 269, 975, 1031
DpnII	GATC	4 cut(s)	250, 267, 973, 1029
DraI	TTTAAA	1 cut(s)	360
EaeI	YGGCCR	2 cut(s)	444, 553
Eam1104I	CTCTTC	1 cut(s)	266
EarI	CTCTTC	1 cut(s)	266
Eco130I	CCWWGG	2 cut(s)	371, 636
Eco47I	GGWCC	1 cut(s)	998
EcoT14I	CCWWGG	2 cut(s)	371, 636
EcoT22I	ATGCAT	1 cut(s)	937
ErhI	CCWWGG	2 cut(s)	371, 636
FaqI	GGGAC	1 cut(s)	601
FauNDI	CATATG	1 cut(s)	334
FblI	GTMKAC	1 cut(s)	519
Fnu4HI	GCNGC	5 cut(s)	6, 109, 732, 984, 1015
FokI	GGATG	3 cut(s)	17, 35, 50
Fsp4HI	GCNGC	5 cut(s)	6, 109, 732, 984, 1015
FspBI	CTAG	3 cut(s)	185, 351, 450
GlaI	GCGC	1 cut(s)	735
GluI	GCNGC	5 cut(s)	6, 109, 732, 984, 1015
GsaI	CCCAGC	1 cut(s)	549
GsuI	CTGGAG	3 cut(s)	489, 498, 1010
HaeIII	GGCC	4 cut(s)	446, 555, 815, 948
HapII	CCGG	1 cut(s)	512
HhaI	GCGC	1 cut(s)	736
Hin6I	GCGC	1 cut(s)	734
HinP1I	GCGC	1 cut(s)	734
HincII	GTYRAC	1 cut(s)	583
HindII	GTYRAC	1 cut(s)	583
HindIII	AAGCTT	1 cut(s)	78
HinfI	GANTC	3 cut(s)	329, 437, 602
HpaII	CCGG	1 cut(s)	512
HphI	GGTGA	2 cut(s)	61, 509
Hpy166II	GTNNAC	3 cut(s)	436, 520, 583
Hpy188I	TCNGA	2 cut(s)	94, 423
Hpy188III	TCNNGA	3 cut(s)	265, 805, 1027
Hpy8I	GTNNAC	3 cut(s)	436, 520, 583
HpyAV	CCTTC	4 cut(s)	250, 752, 805, 959
HpyCH4III	ACNGT	3 cut(s)	90, 461, 919
HpyCH4IV	ACGT	1 cut(s)	318
HpyF10VI	GCNNNNNNNGC	3 cut(s)	322, 941, 1088
HpyF3I	CTNAG	1 cut(s)	792
HpySE526I	ACGT	1 cut(s)	318
HspAI	GCGC	1 cut(s)	734
Kzo9I	GATC	4 cut(s)	250, 267, 973, 1029
LmnI	GCTCC	2 cut(s)	692, 1029
Lsp1109I	GCAGC	4 cut(s)	120, 718, 970, 1026
LweI	GCATC	2 cut(s)	300, 944
MaeI	CTAG	3 cut(s)	185, 351, 450
MaeII	ACGT	1 cut(s)	318
MaeIII	GTNAC	5 cut(s)	15, 187, 220, 342, 906
MalI	GATC	4 cut(s)	252, 269, 975, 1031
MboI	GATC	4 cut(s)	250, 267, 973, 1029
MboII	GAAGA	6 cut(s)	37, 253, 820, 820, 823, 968
MfeI	CAATTG	1 cut(s)	861
MhlI	GDGCHC	1 cut(s)	156
MlsI	TGGCCA	2 cut(s)	446, 555
MluCI	AATT	7 cut(s)	36, 54, 180, 417, 714, 855, 861
MluNI	TGGCCA	2 cut(s)	446, 555
MlyI	GAGTC	2 cut(s)	431, 596
MnlI	CCTC	8 cut(s)	77, 91, 133, 136, 167, 225, 269, 508
Mox20I	TGGCCA	2 cut(s)	446, 555
Mph1103I	ATGCAT	1 cut(s)	937
MscI	TGGCCA	2 cut(s)	446, 555
MseI	TTAA	6 cut(s)	359, 428, 717, 930, 1020, 1093
MslI	CAYNNNNRTG	4 cut(s)	194, 561, 573, 821
Msp20I	TGGCCA	2 cut(s)	446, 555
MspA1I	CMGCKG	1 cut(s)	613
MspI	CCGG	1 cut(s)	512
MspR9I	CCNGG	1 cut(s)	512
MunI	CAATTG	1 cut(s)	861
Mva1269I	GAATGC	1 cut(s)	780
MwoI	GCNNNNNNNGC	3 cut(s)	322, 941, 1088
NciI	CCSGG	1 cut(s)	512
NcoI	CCATGG	2 cut(s)	371, 636
NdeI	CATATG	1 cut(s)	334
NdeII	GATC	4 cut(s)	250, 267, 973, 1029
NlaIV	GGNNCC	1 cut(s)	999
NmuCI	GTSAC	4 cut(s)	15, 187, 220, 906
NsiI	ATGCAT	1 cut(s)	937
NspI	RCATGY	1 cut(s)	1072
PagI	TCATGA	1 cut(s)	804
PaqCI	CACCTGC	3 cut(s)	275, 716, 1052
PctI	GAATGC	1 cut(s)	780
PfeI	GAWTC	1 cut(s)	329
PflMI	CCANNNNNTGG	2 cut(s)	494, 529
PkrI	GCNGC	5 cut(s)	7, 110, 733, 985, 1016
Ple19I	CGATCG	1 cut(s)	253
PleI	GAGTC	2 cut(s)	431, 596
PpsI	GAGTC	2 cut(s)	431, 596
PspFI	CCCAGC	1 cut(s)	545
PspN4I	GGNNCC	1 cut(s)	999
PspPI	GGNCC	1 cut(s)	998
PstNI	CAGNNNCTG	1 cut(s)	149
PvuI	CGATCG	1 cut(s)	253
PvuII	CAGCTG	1 cut(s)	613
RsaI	GTAC	2 cut(s)	797, 887
RsaNI	GTAC	2 cut(s)	796, 886
RseI	CAYNNNNRTG	4 cut(s)	194, 561, 573, 821
SaqAI	TTAA	6 cut(s)	359, 428, 717, 930, 1020, 1093
SatI	GCNGC	5 cut(s)	6, 109, 732, 984, 1015
Sau3AI	GATC	4 cut(s)	250, 267, 973, 1029
Sau96I	GGNCC	1 cut(s)	998
SchI	GAGTC	2 cut(s)	431, 596
ScrFI	CCNGG	1 cut(s)	512
SduI	GDGCHC	1 cut(s)	156
SfaNI	GCATC	2 cut(s)	300, 944
SfcI	CTRYAG	1 cut(s)	785
SinI	GGWCC	1 cut(s)	998
SmiMI	CAYNNNNRTG	4 cut(s)	194, 561, 573, 821
Sse9I	AATT	7 cut(s)	36, 54, 180, 417, 714, 855, 861
SsiI	CCGC	1 cut(s)	774
SspMI	CTAG	3 cut(s)	185, 351, 450
StyD4I	CCNGG	1 cut(s)	510
StyI	CCWWGG	2 cut(s)	371, 636
TaaI	ACNGT	3 cut(s)	90, 461, 919
TaiI	ACGT	1 cut(s)	321
TaqI	TCGA	1 cut(s)	253
TasI	AATT	7 cut(s)	36, 54, 180, 417, 714, 855, 861
TatI	WGTACW	1 cut(s)	795
TfiI	GAWTC	1 cut(s)	329
Tru1I	TTAA	6 cut(s)	359, 428, 717, 930, 1020, 1093
Tru9I	TTAA	6 cut(s)	359, 428, 717, 930, 1020, 1093
TscAI	CASTG	2 cut(s)	118, 310
TseFI	GTSAC	4 cut(s)	15, 187, 220, 906
TseI	GCWGC	5 cut(s)	5, 108, 731, 983, 1014
Tsp45I	GTSAC	4 cut(s)	15, 187, 220, 906
TspDTI	ATGAA	8 cut(s)	37, 301, 321, 551, 734, 793, 821, 982
TspGWI	ACGGA	1 cut(s)	612
TspRI	CASTG	2 cut(s)	118, 310
Van91I	CCANNNNNTGG	2 cut(s)	494, 529
VpaK11BI	GGWCC	1 cut(s)	998
XceI	RCATGY	1 cut(s)	1072
XmiI	GTMKAC	1 cut(s)	519
XspI	CTAG	3 cut(s)	185, 351, 450
Zsp2I	ATGCAT	1 cut(s)	937

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.