Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000062.1

Orthogroup ID

OG0007669

Physical Location & Seq

Genomic Coordinates Reverse (-)

101434 .. 102941

Gene Structure 1508 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000062.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

atggcccctactacttcacttttcaaagtgctcctcccaatcttcttcataatcctcgtctcagcaataattcctcaagctcattcgatatccgagagtgatgaatgccagtctgaaactaccaactcctgccacgacaaggcaggagctgtgcccctcaaaatcatagccattacttcaatcctggtcaccagcatgatcggtgtgtccttgccactcgtcactcgcaccatacccgcattgcaccccgatcgagacatattcgtggttgtcaagtgctttgccggtggcattattcttgccacggggttcatgcacgttttgccagactcttttgacatgttgtcctcgaattgtttggatgagaagccgtggcacaagttccctttcactgggtttgttgctatgttgtctgctattgtgactatgatggtggactccatggctactagcatatacagcaggagatcaaaagccggagttaaccccgatgctgatggtgttgctgcagccattgagggagatcaagagatggctgtggcgagtggcggccatggacattttcattcacacaatcatcaggtcaaaggaggaagcgagtcacagttgtcacgctatcgcgttgttgccatggtattggaactgggaattattgttcactcaattgttatagggctttctcttggagcttcaaacaatacttgcaccattaaaggtcttgtagctgccctttgcttccatcaaatgtttgaaggcatgggccttggtggttgcattctccaggctgagttcaagttcatgaagaaggtagtactggtgttcttcttctcagcaacaaccccatctggaattgcactgggaatggccctgtcaaaaatgtacaaagaaaacagtccaagtgcattagtgacagtaggactgctgaatgcttcttcagctgggctcctcatctacatggctttggttgatcttctctctgctgacttcatgggtccaaagttgcaacgcagcatcaagctccagatcaagtcctacatggctgttcttttgggtgctggtggcatgtctctgttggcaaagtgggcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000302 GO:0003674 GO:0005215 GO:0005381 GO:0005385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006829 GO:0006950 GO:0006979 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0012505 GO:0015075 GO:0015318 GO:0015675 GO:0015691 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0031410 GO:0031982 GO:0031984 GO:0032870 GO:0033554 GO:0034220 GO:0034599 GO:0034614 GO:0034755 GO:0035690 GO:0042221 GO:0042493 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0055085 GO:0070838 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0071577 GO:0071731 GO:0071732 GO:0071944 GO:0072509 GO:0072511 GO:0097366 GO:0097708 GO:0098655 GO:0098660 GO:0098662 GO:0098791 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

362

Amino Acids

38.49

Weight (kDa)

7.67

Isoelectric Point (pI)

38.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007669)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31260 AT4G19690 AT4G19690
fragaria_vesca	FvH4_3g12020
malus_domestica	MD05G1255500.v1.1
prunus_persica	Prupe.4G108400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0019701 RchiOBHm_Chr5g0019711
rosa_laevigata	RLG00000032462 RLG00000032463
rosa_multiflora	Rmu_sc0003325.1_g000008 Rmu_ssc0000062.1_g000007 Rmu_ssc0000062.1_g000017
rosa_roxburghii	Rroxscaffold_1G00058400
rosa_rugosa	Rorug05G0052700 Rorug05G0053300
rosa_samantha	Rh5AG143700 Rh5BG142200 Rh5BG142600 Rh5CG153900 Rh5CG154000 Rh5DG142600 Rh5DG142700
rosa_wichuraiana	Rw5G012720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	621
AciI	CCGC	2 cut(s)	237, 549
AcoI	YGGCCR	1 cut(s)	550
AcuI	CTGAAG	1 cut(s)	918
AfaI	GTAC	2 cut(s)	813, 881
AfiI	CCNNNNNNNGG	2 cut(s)	139, 392
AflIII	ACRYGT	1 cut(s)	339
AgsI	TTSAA	5 cut(s)	25, 180, 693, 752, 793
AhdI	GACNNNNNGTC	1 cut(s)	343
AjnI	CCWGG	2 cut(s)	183, 780
AloI	GAACNNNNNNTCC	2 cut(s)	639, 671
AluBI	AGCT	6 cut(s)	80, 149, 689, 725, 938, 1018
AluI	AGCT	6 cut(s)	80, 149, 689, 725, 938, 1018
Alw21I	GWGCWC	1 cut(s)	33
Alw26I	GTCTC	3 cut(s)	64, 249, 1071
AlwNI	CAGNNNCTG	1 cut(s)	149
AoxI	GGCC	4 cut(s)	3, 550, 760, 864
ApeKI	GCWGC	4 cut(s)	506, 509, 725, 1008
AspS9I	GGNCC	4 cut(s)	4, 760, 865, 992
AsuHPI	GGTGA	1 cut(s)	181
AvaII	GGWCC	1 cut(s)	992
BaeGI	GKGCMC	1 cut(s)	156
BanII	GRGCYC	1 cut(s)	945
Bbv12I	GWGCWC	1 cut(s)	33
BbvI	GCAGC	4 cut(s)	493, 521, 712, 1020
BccI	CCATC	5 cut(s)	424, 491, 526, 747, 850
BceAI	ACGGC	1 cut(s)	355
BcgI	CGANNNNNNTGC	2 cut(s)	233, 267
BciT130I	CCWGG	2 cut(s)	185, 782
BcoDI	GTCTC	3 cut(s)	64, 249, 1071
BfaI	CTAG	1 cut(s)	450
BfmI	CTRYAG	1 cut(s)	507
BisI	GCNGC	5 cut(s)	507, 510, 550, 726, 1009
BlsI	GCNGC	5 cut(s)	508, 511, 551, 727, 1010
BmcAI	AGTACT	1 cut(s)	813
Bme1390I	CCNGG	2 cut(s)	185, 782
Bme18I	GGWCC	1 cut(s)	992
BmeRI	GACNNNNNGTC	1 cut(s)	343
BmgT120I	GGNCC	4 cut(s)	4, 760, 865, 992
BmiI	GGNNCC	3 cut(s)	6, 944, 993
BmrFI	CCNGG	2 cut(s)	185, 782
BmrI	ACTGGG	3 cut(s)	402, 653, 866
BmsI	GCATC	2 cut(s)	481, 1020
BmuI	ACTGGG	3 cut(s)	402, 653, 866
BpmI	CTGGAG	2 cut(s)	764, 1004
BpuEI	CTTGAG	1 cut(s)	60
BsaJI	CCNNGG	6 cut(s)	303, 371, 441, 553, 630, 763
Bsc4I	CCNNNNNNNGG	2 cut(s)	139, 392
Bse118I	RCCGGY	1 cut(s)	284
Bse1I	ACTGG	5 cut(s)	109, 397, 648, 819, 861
Bse3DI	GCAATG	1 cut(s)	239
BseBI	CCWGG	2 cut(s)	185, 782
BseDI	CCNNGG	6 cut(s)	303, 371, 441, 553, 630, 763
BseGI	GGATG	1 cut(s)	367
BseLI	CCNNNNNNNGG	2 cut(s)	139, 392
BseMI	GCAATG	1 cut(s)	239
BseMII	CTCAG	3 cut(s)	75, 777, 843
BseNI	ACTGG	5 cut(s)	109, 397, 648, 819, 861
BseRI	GAGGAG	2 cut(s)	23, 935
BseSI	GKGCMC	1 cut(s)	156
BseXI	GCAGC	4 cut(s)	493, 521, 712, 1020
BseYI	CCCAGC	1 cut(s)	938
Bsh1236I	CGCG	1 cut(s)	621
Bsh1285I	CGRYCG	1 cut(s)	253
BshFI	GGCC	4 cut(s)	5, 552, 762, 866
BsiEI	CGRYCG	1 cut(s)	253
BsiHKAI	GWGCWC	1 cut(s)	33
BsiSI	CCGG	2 cut(s)	285, 477
BslI	CCNNNNNNNGG	2 cut(s)	139, 392
BsmAI	GTCTC	3 cut(s)	64, 249, 1071
BsmBI	CGTCTC	1 cut(s)	64
BsmI	GAATGC	3 cut(s)	110, 774, 931
BsnI	GGCC	4 cut(s)	5, 552, 762, 866
Bsp1286I	GDGCHC	3 cut(s)	33, 156, 945
Bsp1407I	TGTACA	1 cut(s)	879
Bsp143I	GATC	6 cut(s)	198, 250, 467, 523, 967, 1023
Bsp19I	CCATGG	3 cut(s)	441, 553, 630
BspACI	CCGC	2 cut(s)	237, 549
BspANI	GGCC	4 cut(s)	5, 552, 762, 866
BspCNI	CTCAG	3 cut(s)	74, 778, 842
BspFNI	CGCG	1 cut(s)	621
BspHI	TCATGA	1 cut(s)	798
BspLI	GGNNCC	3 cut(s)	6, 944, 993
BspMAI	CTGCAG	1 cut(s)	511
BsrDI	GCAATG	1 cut(s)	239
BsrFI	RCCGGY	1 cut(s)	284
BsrGI	TGTACA	1 cut(s)	879
BsrI	ACTGG	5 cut(s)	109, 397, 648, 819, 861
BssAI	RCCGGY	1 cut(s)	284
BssECI	CCNNGG	6 cut(s)	303, 371, 441, 553, 630, 763
BssMI	GATC	6 cut(s)	198, 250, 467, 523, 967, 1023
BssT1I	CCWWGG	4 cut(s)	441, 553, 630, 763
Bst2UI	CCWGG	2 cut(s)	185, 782
Bst4CI	ACNGT	3 cut(s)	606, 893, 913
BstAPI	GCANNNNNTGC	1 cut(s)	322
BstAUI	TGTACA	1 cut(s)	879
BstDEI	CTNAG	3 cut(s)	61, 786, 829
BstDSI	CCRYGG	5 cut(s)	303, 371, 441, 553, 630
BstEII	GGTNACC	1 cut(s)	187
BstF5I	GGATG	1 cut(s)	367
BstFNI	CGCG	1 cut(s)	621
BstKTI	GATC	6 cut(s)	201, 253, 470, 526, 970, 1026
BstMAI	GTCTC	3 cut(s)	64, 249, 1071
BstMBI	GATC	6 cut(s)	198, 250, 467, 523, 967, 1023
BstMCI	CGRYCG	1 cut(s)	253
BstMWI	GCNNNNNNNGC	4 cut(s)	322, 459, 935, 1082
BstNI	CCWGG	2 cut(s)	185, 782
BstNSI	RCATGY	2 cut(s)	343, 1066
BstPI	GGTNACC	1 cut(s)	187
BstSCI	CCNGG	2 cut(s)	183, 780
BstSFI	CTRYAG	1 cut(s)	507
BstSLI	GKGCMC	1 cut(s)	156
BstUI	CGCG	1 cut(s)	621
BstV1I	GCAGC	4 cut(s)	493, 521, 712, 1020
BstXI	CCANNNNNNTGG	1 cut(s)	637
BsuRI	GGCC	4 cut(s)	5, 552, 762, 866
BtgI	CCRYGG	5 cut(s)	303, 371, 441, 553, 630
BtsCI	GGATG	1 cut(s)	367
BtsIMutI	CAGTG	2 cut(s)	390, 854
CaiI	CAGNNNCTG	1 cut(s)	149
CciI	TCATGA	1 cut(s)	798
Cfr10I	RCCGGY	1 cut(s)	284
Cfr13I	GGNCC	4 cut(s)	4, 760, 865, 992
Csp6I	GTAC	2 cut(s)	812, 880
CviQI	GTAC	2 cut(s)	812, 880
DdeI	CTNAG	3 cut(s)	61, 786, 829
DpnI	GATC	6 cut(s)	200, 252, 469, 525, 969, 1025
DpnII	GATC	6 cut(s)	198, 250, 467, 523, 967, 1023
DriI	GACNNNNNGTC	1 cut(s)	343
EaeI	YGGCCR	1 cut(s)	550
Eam1105I	GACNNNNNGTC	1 cut(s)	343
Eco130I	CCWWGG	4 cut(s)	441, 553, 630, 763
Eco24I	GRGCYC	1 cut(s)	945
Eco32I	GATATC	1 cut(s)	90
Eco47I	GGWCC	1 cut(s)	992
Eco57I	CTGAAG	1 cut(s)	918
Eco91I	GGTNACC	1 cut(s)	187
EcoO65I	GGTNACC	1 cut(s)	187
EcoRII	CCWGG	2 cut(s)	183, 780
EcoRV	GATATC	1 cut(s)	90
EcoT14I	CCWWGG	4 cut(s)	441, 553, 630, 763
EcoT38I	GRGCYC	1 cut(s)	945
ErhI	CCWWGG	4 cut(s)	441, 553, 630, 763
Esp3I	CGTCTC	1 cut(s)	64
FauI	CCCGC	1 cut(s)	244
Fnu4HI	GCNGC	5 cut(s)	507, 510, 550, 726, 1009
FokI	GGATG	1 cut(s)	374
FriOI	GRGCYC	1 cut(s)	945
Fsp4HI	GCNGC	5 cut(s)	507, 510, 550, 726, 1009
FspBI	CTAG	1 cut(s)	450
GluI	GCNGC	5 cut(s)	507, 510, 550, 726, 1009
GsaI	CCCAGC	1 cut(s)	942
GsuI	CTGGAG	2 cut(s)	764, 1004
HaeIII	GGCC	4 cut(s)	5, 552, 762, 866
HapII	CCGG	2 cut(s)	285, 477
HincII	GTYRAC	1 cut(s)	484
HindII	GTYRAC	1 cut(s)	484
HinfI	GANTC	3 cut(s)	329, 437, 599
HpaI	GTTAAC	1 cut(s)	484
HpaII	CCGG	2 cut(s)	285, 477
HphI	GGTGA	1 cut(s)	181
Hpy166II	GTNNAC	3 cut(s)	436, 484, 658
Hpy188I	TCNGA	2 cut(s)	94, 115
Hpy188III	TCNNGA	5 cut(s)	254, 527, 799, 846, 1021
Hpy8I	GTNNAC	3 cut(s)	436, 484, 658
HpyAV	CCTTC	2 cut(s)	746, 799
HpyCH4III	ACNGT	3 cut(s)	606, 893, 913
HpyCH4IV	ACGT	1 cut(s)	318
HpyCH4V	TGCA	8 cut(s)	244, 316, 509, 705, 774, 854, 902, 1003
HpyF10VI	GCNNNNNNNGC	4 cut(s)	322, 459, 935, 1082
HpyF3I	CTNAG	3 cut(s)	61, 786, 829
HpySE526I	ACGT	1 cut(s)	318
KspAI	GTTAAC	1 cut(s)	484
Kzo9I	GATC	6 cut(s)	198, 250, 467, 523, 967, 1023
LmnI	GCTCC	5 cut(s)	36, 146, 686, 948, 1023
Lsp1109I	GCAGC	4 cut(s)	493, 521, 712, 1020
LweI	GCATC	2 cut(s)	481, 1020
MaeI	CTAG	1 cut(s)	450
MaeII	ACGT	1 cut(s)	318
MaeIII	GTNAC	6 cut(s)	187, 220, 421, 600, 609, 907
MalI	GATC	6 cut(s)	200, 252, 469, 525, 969, 1025
MboI	GATC	6 cut(s)	198, 250, 467, 523, 967, 1023
MboII	GAAGA	7 cut(s)	34, 37, 814, 814, 817, 924, 962
MfeI	CAATTG	1 cut(s)	663
MhlI	GDGCHC	3 cut(s)	33, 156, 945
MluCI	AATT	5 cut(s)	69, 352, 648, 663, 849
MlyI	GAGTC	3 cut(s)	323, 431, 608
MnlI	CCTC	8 cut(s)	44, 65, 84, 167, 358, 511, 584, 956
MseI	TTAA	3 cut(s)	483, 711, 1087
MslI	CAYNNNNRTG	3 cut(s)	194, 263, 953
MspA1I	CMGCKG	1 cut(s)	938
MspI	CCGG	2 cut(s)	285, 477
MspR9I	CCNGG	2 cut(s)	185, 782
MunI	CAATTG	1 cut(s)	663
Mva1269I	GAATGC	3 cut(s)	110, 774, 931
MvaI	CCWGG	2 cut(s)	185, 782
MvnI	CGCG	1 cut(s)	621
MwoI	GCNNNNNNNGC	4 cut(s)	322, 459, 935, 1082
NcoI	CCATGG	3 cut(s)	441, 553, 630
NdeII	GATC	6 cut(s)	198, 250, 467, 523, 967, 1023
NlaIV	GGNNCC	3 cut(s)	6, 944, 993
NmuCI	GTSAC	6 cut(s)	187, 220, 421, 600, 609, 907
NspI	RCATGY	2 cut(s)	343, 1066
PagI	TCATGA	1 cut(s)	798
PciI	ACATGT	1 cut(s)	339
PctI	GAATGC	3 cut(s)	110, 774, 931
PkrI	GCNGC	5 cut(s)	508, 511, 551, 727, 1010
Ple19I	CGATCG	1 cut(s)	253
PleI	GAGTC	3 cut(s)	323, 431, 607
PpsI	GAGTC	3 cut(s)	323, 431, 607
PscI	ACATGT	1 cut(s)	339
Psp6I	CCWGG	2 cut(s)	183, 780
PspEI	GGTNACC	1 cut(s)	187
PspFI	CCCAGC	1 cut(s)	938
PspGI	CCWGG	2 cut(s)	183, 780
PspN4I	GGNNCC	3 cut(s)	6, 944, 993
PspPI	GGNCC	4 cut(s)	4, 760, 865, 992
PstI	CTGCAG	1 cut(s)	511
PstNI	CAGNNNCTG	1 cut(s)	149
PvuI	CGATCG	1 cut(s)	253
PvuII	CAGCTG	1 cut(s)	938
RsaI	GTAC	2 cut(s)	813, 881
RsaNI	GTAC	2 cut(s)	812, 880
RseI	CAYNNNNRTG	3 cut(s)	194, 263, 953
SaqAI	TTAA	3 cut(s)	483, 711, 1087
SatI	GCNGC	5 cut(s)	507, 510, 550, 726, 1009
Sau3AI	GATC	6 cut(s)	198, 250, 467, 523, 967, 1023
Sau96I	GGNCC	4 cut(s)	4, 760, 865, 992
ScaI	AGTACT	1 cut(s)	813
SchI	GAGTC	3 cut(s)	323, 431, 608
ScrFI	CCNGG	2 cut(s)	185, 782
SduI	GDGCHC	3 cut(s)	33, 156, 945
SfaNI	GCATC	2 cut(s)	481, 1020
SfcI	CTRYAG	1 cut(s)	507
SinI	GGWCC	1 cut(s)	992
SmiMI	CAYNNNNRTG	3 cut(s)	194, 263, 953
SmlI	CTYRAG	1 cut(s)	75
SmoI	CTYRAG	1 cut(s)	75
Sse9I	AATT	5 cut(s)	69, 352, 648, 663, 849
SsiI	CCGC	2 cut(s)	237, 549
SspMI	CTAG	1 cut(s)	450
StyD4I	CCNGG	2 cut(s)	183, 780
StyI	CCWWGG	4 cut(s)	441, 553, 630, 763
TaaI	ACNGT	3 cut(s)	606, 893, 913
TaiI	ACGT	1 cut(s)	321
TaqI	TCGA	3 cut(s)	86, 253, 350
TasI	AATT	5 cut(s)	69, 352, 648, 663, 849
TatI	WGTACW	2 cut(s)	811, 879
TauI	GCSGC	1 cut(s)	552
Tru1I	TTAA	3 cut(s)	483, 711, 1087
Tru9I	TTAA	3 cut(s)	483, 711, 1087
TscAI	CASTG	2 cut(s)	397, 861
TseFI	GTSAC	6 cut(s)	187, 220, 421, 600, 609, 907
TseI	GCWGC	4 cut(s)	506, 509, 725, 1008
Tsp45I	GTSAC	6 cut(s)	187, 220, 421, 600, 609, 907
TspDTI	ATGAA	7 cut(s)	37, 117, 301, 554, 787, 815, 976
TspRI	CASTG	2 cut(s)	397, 861
VpaK11BI	GGWCC	1 cut(s)	992
XceI	RCATGY	2 cut(s)	343, 1066
XspI	CTAG	1 cut(s)	450
ZrmI	AGTACT	1 cut(s)	813

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.