Rorug05G0053300

chromatin organization

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0001726
Physical Location & Seq
Forward (+)
4626333 .. 4630956
4624 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0053300.1

Sequence Viewer

Length: 1842 bp
ATGAACCAGATTCACCACAAGTACGTAACCGTACAAGGCCTGAAGCTCCATGTCGCCGACATCGGAACAGGTCCCAACGTGGTCGTGTTCCTGCATGGTTTCCCGGAGATATGGTATTCCTGGCGCCACCAGATGATCGCCGTAGCCGACGCCGGTTTCCGGGCCATCGCTCCTGACTACCGCGGATACGGACTATCCGACCCGCCTCCCCAACCCGAGAAGACCTCCTCCCATGACCTCATCAATGACCTTATTGGAATTCTTGATGCTTTGGGTATTCCTAAGGTTTTCCTCATCGGAAAAGATTTTGGAGCTAGACCGGTATACTTGTTTGCCCTTCTGCACCCAGAAAAGGTGTTGGGAGTTGTAACAATGGGAGTTCCATACAGGCCACCATCAACTCGTTCCCCATATGATAAAGATCTCCCTGAAGGTTTCTACATCAATAGATGGCGGGAACCTGGCAGGGCTGAAGCTGATTTTGGACGCCTTGATGCAAAAACAGTTGTTAGGAATGTTTACATCCTTTTCTCAAGAAGCGAACTACCAATAGCTGCTGAGAACCAGGAGATCATGGACTTGGTGGACTCGTCCACACCTCTTCCCCCTTGGTTTACTGAGGAAGATCTTGAAGCATATGGAAAGCTGTATGAGAAATCAGGTTTCCGAACTGCCTTGCAAATGCCATATAGGAAATCCATAGACGACTTGGGCACAACCGAATCAATCGTTAGAGTTCCAGTGCTGTTTTTAATGGGAGAGAAGGATTATTTCTTGAAATTTCCAGGGATAGAACATTACATAAACAGTGGAAAGTTAAACGAGTTTGTCCCCGATTTGGAGATTGTATCTCTGCCGGAAGGAACACATTTTGTTCAAGAACAATCACCTAAACAGAAAATGGACCAGATTCAGCACAAGTACGTAACCGTACATGGCCTGAACCTCCACGTCGCCGACTTCGGAACCGGTCCCAATGTGGTCGTGTTCCTGCACGGATTCCCAGAAATCTGGTACTCGTGGCGCCACCAGATGGTCGCCGTGGCCAATGCCGGGTTCCGGGCCATCGCGCCCGACTACCGCGGGTACGGACTCTCCGACCCACCACCCAAACCGGAGAAGACCACCTTCCATGACCTCATCAATGACCTCCTTGGAATTCTCGATGCTCTGGCCATTCCCAAGGTTTTCCTCATTGCGAAAGATTTTGGAGCCCGGCCGGCATACTTGTTTGCCCTTCTGCACCCAGAAAGGGTCTCGGGAGTTGTAACAATGGGAGTTCCATACACACCACCAACAAGTCGTCCCCAATACGAGAATTCCCTCCCTGAAGGTTTTTACATCAACAGATGGCAAGAACCTGGCCGGGCAGAAGCTGATTTTGGACGCCTTGATGCAAAAGCAGTTGTTCGGAATATTTACATCCTTTTCGCAAGAAGTGAACTACCAATAGCTGCAGAAAACCAGGAGATCATGGACTTGGTGGACTCGTCTACACCTCTTCCCCCATGGTTTACTGAGGAAGATCTTGAAGCATATGGAAAGTTGTACGAGAAATCAGGTTTCCGAACCGCACTGCAAGTTCCATATAGGGTGATTAAAGAAGATTTGGGCATAACCAATGATCCAACTGTTAAAGTTCCAGTGCTGAATATAATGGGAAACAAGGATTATGTATTCAAATTTCCAGGGATGGCAGATTACATAAACAGTGGAATGTTGAAAGAGTTTGTCCCCGATCTGGAGATTGTATTTCTCCCTGAAGGAACTCATTTTGTTCAAGAACAATTGCCTGAACAGATTAATGAGCTCATCCTCACCTTCCTTGGAAAGCACATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000070 GO:0000118 GO:0000122 GO:0000151 GO:0000228 GO:0000278 GO:0000280 GO:0000281 GO:0000775 GO:0000776 GO:0000777 GO:0000778 GO:0000779 GO:0000780 GO:0000785 GO:0000790 GO:0000793 GO:0000794 GO:0000819 GO:0000910 GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001067 GO:0001558 GO:0001708 GO:0002064 GO:0002065 GO:0002066 GO:0002244 GO:0002376 GO:0002520 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003723 GO:0003824 GO:0004407 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005677 GO:0005694 GO:0005700 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006277 GO:0006281 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006335 GO:0006336 GO:0006338 GO:0006342 GO:0006349 GO:0006351 GO:0006355 GO:0006357 GO:0006464 GO:0006473 GO:0006475 GO:0006476 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007076 GO:0007275 GO:0007276 GO:0007281 GO:0007292 GO:0007304 GO:0007306 GO:0007307 GO:0007346 GO:0007379 GO:0007389 GO:0007548 GO:0008150 GO:0008152 GO:0008213 GO:0008283 GO:0008284 GO:0008285 GO:0008406 GO:0009058 GO:0009059 GO:0009266 GO:0009408 GO:0009507 GO:0009536 GO:0009555 GO:0009611 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009790 GO:0009791 GO:0009792 GO:0009793 GO:0009887 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009987 GO:0010026 GO:0010033 GO:0010035 GO:0010038 GO:0010154 GO:0010214 GO:0010286 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010629 GO:0010927 GO:0010948 GO:0014070 GO:0016043 GO:0016070 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016573 GO:0016575 GO:0016580 GO:0016581 GO:0016584 GO:0016589 GO:0016787 GO:0016810 GO:0016811 GO:0017053 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019213 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0019899 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0022607 GO:0030097 GO:0030154 GO:0030261 GO:0030308 GO:0030703 GO:0030707 GO:0030855 GO:0031010 GO:0031055 GO:0031099 GO:0031101 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031461 GO:0031497 GO:0031507 GO:0031519 GO:0031523 GO:0031974 GO:0031981 GO:0032221 GO:0032259 GO:0032501 GO:0032502 GO:0032504 GO:0032774 GO:0032989 GO:0032991 GO:0033186 GO:0033554 GO:0033558 GO:0033698 GO:0033993 GO:0034080 GO:0034508 GO:0034605 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0034708 GO:0034723 GO:0034724 GO:0034728 GO:0035035 GO:0035097 GO:0035098 GO:0035239 GO:0035282 GO:0035295 GO:0035601 GO:0036211 GO:0040007 GO:0040008 GO:0040029 GO:0040035 GO:0042060 GO:0042127 GO:0042221 GO:0042246 GO:0042393 GO:0042766 GO:0042802 GO:0042803 GO:0042826 GO:0043044 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043486 GO:0043543 GO:0043565 GO:0043687 GO:0043933 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044703 GO:0045137 GO:0045138 GO:0045165 GO:0045786 GO:0045787 GO:0045814 GO:0045892 GO:0045926 GO:0045934 GO:0046483 GO:0046661 GO:0046689 GO:0046983 GO:0048229 GO:0048285 GO:0048316 GO:0048366 GO:0048367 GO:0048468 GO:0048477 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048534 GO:0048545 GO:0048546 GO:0048557 GO:0048562 GO:0048565 GO:0048566 GO:0048568 GO:0048580 GO:0048589 GO:0048598 GO:0048608 GO:0048609 GO:0048646 GO:0048731 GO:0048806 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051276 GO:0051301 GO:0051382 GO:0051383 GO:0051704 GO:0051716 GO:0051726 GO:0055123 GO:0060255 GO:0060429 GO:0061458 GO:0061640 GO:0061641 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070176 GO:0070210 GO:0070316 GO:0070317 GO:0070370 GO:0070603 GO:0070822 GO:0070828 GO:0070925 GO:0071103 GO:0071514 GO:0071704 GO:0071824 GO:0071840 GO:0071897 GO:0080008 GO:0080090 GO:0090304 GO:0090545 GO:0090558 GO:0090568 GO:0090571 GO:0090598 GO:0097159 GO:0097659 GO:0098654 GO:0098687 GO:0098732 GO:0098813 GO:0099402 GO:0140014 GO:0140096 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1902494 GO:1902679 GO:1903047 GO:1903506 GO:1903507 GO:1904949 GO:1990234 GO:1990483 GO:1990837 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000653 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04218 map04218
Pfam Domains
Protein Families
CAF1C_H4-bd WD40

Protein Analysis

613

Amino Acids

69.27

Weight (kDa)

5.4

Isoelectric Point (pI)

42.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_1 PF00561 26 - 294 1.8e-27 alpha/beta hydrolase fold
Hydrolase_4 PF12146 27 - 127 1.2e-07 Serine aminopeptidase, S33
Abhydrolase_6 PF12697 28 - 298 2.2e-12 Alpha/beta hydrolase family
Abhydrolase_1 PF00561 326 - 593 8.5e-26 alpha/beta hydrolase fold
Hydrolase_4 PF12146 327 - 426 1.1e-08 Serine aminopeptidase, S33
Abhydrolase_6 PF12697 328 - 603 3.1e-12 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 123, 1023
AccB7I CCANNNNNTGG 1 cut(s) 1033
AccI GTMKAC 2 cut(s) 324, 1493
AccII CGCG 3 cut(s) 183, 1070, 1083
AciI CCGC 7 cut(s) 181, 183, 203, 454, 1081, 1083, 1572
AclWI GGATC 1 cut(s) 1619
AcoI YGGCCR 4 cut(s) 1044, 1173, 1217, 1363
AcsI RAATTY 5 cut(s) 258, 779, 1158, 1318, 1682
AcuI CTGAAG 5 cut(s) 62, 450, 492, 1350, 1782
AcyI GRCGYC 5 cut(s) 124, 150, 487, 1024, 1387
AfaI GTAC 7 cut(s) 23, 33, 923, 933, 1016, 1088, 1550
AfiI CCNNNNNNNGG 8 cut(s) 159, 352, 838, 1033, 1053, 1059, 1252, 1741
AgeI ACCGGT 2 cut(s) 319, 968
AgsI TTSAA 7 cut(s) 632, 778, 878, 1532, 1681, 1723, 1781
AjiI CACGTC 1 cut(s) 952
AjnI CCWGG 7 cut(s) 119, 460, 564, 784, 1360, 1464, 1687
AjuI GAANNNNNNNTTGG 6 cut(s) 465, 497, 1040, 1072, 1365, 1397
AluBI AGCT 8 cut(s) 46, 314, 476, 554, 646, 1376, 1454, 1810
AluI AGCT 8 cut(s) 46, 314, 476, 554, 646, 1376, 1454, 1810
Alw21I GWGCWC 1 cut(s) 1812
Alw26I GTCTC 1 cut(s) 1261
AlwI GGATC 1 cut(s) 1619
AlwNI CAGNNNCTG 1 cut(s) 1376
Ama87I CYCGRG 2 cut(s) 215, 1258
AoxI GGCC 9 cut(s) 37, 162, 389, 937, 1044, 1062, 1173, 1217, 1363
ApeKI GCWGC 2 cut(s) 554, 1454
ApoI RAATTY 5 cut(s) 258, 779, 1158, 1318, 1682
AseI ATTAAT 1 cut(s) 1803
AsiGI ACCGGT 2 cut(s) 319, 968
AspLEI GCGC 3 cut(s) 126, 1026, 1072
AspS9I GGNCC 5 cut(s) 71, 162, 904, 971, 1062
AsuC2I CCSGG 6 cut(s) 104, 161, 1054, 1061, 1216, 1367
AsuHPI GGTGA 4 cut(s) 5, 879, 1606, 1810
AvaI CYCGRG 2 cut(s) 215, 1258
AvaII GGWCC 3 cut(s) 71, 904, 971
AxyI CCTNAGG 1 cut(s) 282
BaeGI GKGCMC 1 cut(s) 716
BalI TGGCCA 2 cut(s) 1046, 1175
BanI GGYRCC 2 cut(s) 123, 1023
BanII GRGCYC 2 cut(s) 1216, 1812
BauI CACGAG 1 cut(s) 1018
BbsI GAAGAC 2 cut(s) 227, 1127
Bbv12I GWGCWC 1 cut(s) 1812
BbvI GCAGC 2 cut(s) 541, 1441
BccI CCATC 7 cut(s) 173, 403, 444, 1027, 1073, 1344, 1687
BceAI ACGGC 2 cut(s) 125, 1025
BciT130I CCWGG 7 cut(s) 121, 462, 566, 786, 1362, 1466, 1689
BciVI GTATCC 1 cut(s) 179
BcnI CCSGG 6 cut(s) 104, 161, 1054, 1061, 1216, 1367
BcoDI GTCTC 1 cut(s) 1261
BfaI CTAG 1 cut(s) 315
BfmI CTRYAG 1 cut(s) 1455
BfoI RGCGCY 2 cut(s) 127, 1027
BfuI GTATCC 1 cut(s) 179
BglI GCCNNNNNGGC 1 cut(s) 1220
BglII AGATCT 3 cut(s) 421, 625, 1525
BisI GCNGC 2 cut(s) 555, 1455
BlsI GCNGC 2 cut(s) 556, 1456
Bme18I GGWCC 3 cut(s) 71, 904, 971
BmeT110I CYCGRG 2 cut(s) 215, 1258
BmgBI CACGTC 1 cut(s) 952
BmgT120I GGNCC 5 cut(s) 71, 162, 904, 971, 1062
BmiI GGNNCC 8 cut(s) 73, 125, 459, 967, 973, 1025, 1058, 1213
BmsI GCATC 4 cut(s) 256, 484, 1156, 1384
BpiI GAAGAC 2 cut(s) 227, 1127
BplI GAGNNNNNCTC 2 cut(s) 209, 241
BpmI CTGGAG 1 cut(s) 1763
BpuEI CTTGAG 1 cut(s) 517
BpuMI CCSGG 6 cut(s) 104, 161, 1054, 1061, 1216, 1367
BsaAI YACGTR 2 cut(s) 25, 925
BsaBI GATNNNNATC 1 cut(s) 420
BsaHI GRCGYC 5 cut(s) 124, 150, 487, 1024, 1387
BsaI GGTCTC 1 cut(s) 1261
BsaWI WCCGGW 3 cut(s) 319, 968, 1114
BsaXI ACNNNNNCTCC 4 cut(s) 98, 128, 1079, 1109
Bsc4I CCNNNNNNNGG 8 cut(s) 159, 352, 838, 1033, 1053, 1059, 1252, 1741
Bse118I RCCGGY 4 cut(s) 152, 319, 968, 1219
Bse1I ACTGG 2 cut(s) 740, 1643
Bse21I CCTNAGG 1 cut(s) 282
Bse3DI GCAATG 1 cut(s) 1194
Bse8I GATNNNNATC 1 cut(s) 420
BseBI CCWGG 7 cut(s) 121, 462, 566, 786, 1362, 1466, 1689
BseGI GGATG 4 cut(s) 522, 1422, 1698, 1812
BseJI GATNNNNATC 1 cut(s) 420
BseLI CCNNNNNNNGG 8 cut(s) 159, 352, 838, 1033, 1053, 1059, 1252, 1741
BseMI GCAATG 1 cut(s) 1194
BseMII CTCAG 3 cut(s) 549, 609, 1509
BseNI ACTGG 2 cut(s) 740, 1643
BseRI GAGGAG 1 cut(s) 217
BseSI GKGCMC 1 cut(s) 716
BseX3I CGGCCG 1 cut(s) 1217
BseXI GCAGC 2 cut(s) 541, 1441
BsgI GTGCAG 3 cut(s) 326, 977, 1226
Bsh1236I CGCG 3 cut(s) 183, 1070, 1083
Bsh1285I CGRYCG 1 cut(s) 1220
BshFI GGCC 9 cut(s) 39, 164, 391, 939, 1046, 1064, 1175, 1219, 1365
BshNI GGYRCC 2 cut(s) 123, 1023
BshTI ACCGGT 2 cut(s) 319, 968
BsiEI CGRYCG 1 cut(s) 1220
BsiHKAI GWGCWC 1 cut(s) 1812
BsiHKCI CYCGRG 2 cut(s) 215, 1258
BslFI GGGAC 5 cut(s) 57, 815, 957, 1290, 1718
BslI CCNNNNNNNGG 8 cut(s) 159, 352, 838, 1033, 1053, 1059, 1252, 1741
BsmAI GTCTC 1 cut(s) 1261
BsmFI GGGAC 5 cut(s) 57, 815, 957, 1290, 1718
BsnI GGCC 9 cut(s) 39, 164, 391, 939, 1046, 1064, 1175, 1219, 1365
Bso31I GGTCTC 1 cut(s) 1261
BsoBI CYCGRG 2 cut(s) 215, 1258
Bsp1286I GDGCHC 3 cut(s) 716, 1216, 1812
Bsp143I GATC 8 cut(s) 135, 421, 570, 625, 1470, 1525, 1624, 1738
Bsp19I CCATGG 1 cut(s) 1508
BspACI CCGC 7 cut(s) 181, 183, 203, 454, 1081, 1083, 1572
BspANI GGCC 9 cut(s) 39, 164, 391, 939, 1046, 1064, 1175, 1219, 1365
BspCNI CTCAG 3 cut(s) 550, 610, 1510
BspFNI CGCG 3 cut(s) 183, 1070, 1083
BspLI GGNNCC 8 cut(s) 73, 125, 459, 967, 973, 1025, 1058, 1213
BspMAI CTGCAG 1 cut(s) 1459
BspPI GGATC 1 cut(s) 1619
BspT107I GGYRCC 2 cut(s) 123, 1023
BspTNI GGTCTC 1 cut(s) 1261
BsrDI GCAATG 1 cut(s) 1194
BsrFI RCCGGY 4 cut(s) 152, 319, 968, 1219
BsrI ACTGG 2 cut(s) 740, 1643
BssAI RCCGGY 4 cut(s) 152, 319, 968, 1219
BssMI GATC 8 cut(s) 135, 421, 570, 625, 1470, 1525, 1624, 1738
BssNAI GTATAC 1 cut(s) 325
BssNI GRCGYC 5 cut(s) 124, 150, 487, 1024, 1387
BssSI CACGAG 1 cut(s) 1018
BssT1I CCWWGG 5 cut(s) 608, 1153, 1182, 1508, 1825
Bst1107I GTATAC 1 cut(s) 325
Bst2BI CACGAG 1 cut(s) 1018
Bst2UI CCWGG 7 cut(s) 121, 462, 566, 786, 1362, 1466, 1689
Bst4CI ACNGT 6 cut(s) 31, 505, 809, 931, 1633, 1712
Bst6I CTCTTC 2 cut(s) 606, 1506
BstACI GRCGYC 5 cut(s) 124, 150, 487, 1024, 1387
BstBAI YACGTR 2 cut(s) 25, 925
BstC8I GCNNGC 1 cut(s) 1221
BstDEI CTNAG 4 cut(s) 282, 558, 618, 1518
BstDSI CCRYGG 4 cut(s) 181, 1041, 1081, 1508
BstF5I GGATG 4 cut(s) 522, 1422, 1698, 1812
BstFNI CGCG 3 cut(s) 183, 1070, 1083
BstH2I RGCGCY 2 cut(s) 127, 1027
BstHHI GCGC 3 cut(s) 126, 1026, 1072
BstKTI GATC 8 cut(s) 138, 424, 573, 628, 1473, 1528, 1627, 1741
BstMAI GTCTC 1 cut(s) 1261
BstMBI GATC 8 cut(s) 135, 421, 570, 625, 1470, 1525, 1624, 1738
BstMCI CGRYCG 1 cut(s) 1220
BstMWI GCNNNNNNNGC 1 cut(s) 1220
BstNI CCWGG 7 cut(s) 121, 462, 566, 786, 1362, 1466, 1689
BstSFI CTRYAG 1 cut(s) 1455
BstSLI GKGCMC 1 cut(s) 716
BstSNI TACGTA 2 cut(s) 25, 925
BstUI CGCG 3 cut(s) 183, 1070, 1083
BstV1I GCAGC 2 cut(s) 541, 1441
BstV2I GAAGAC 2 cut(s) 227, 1127
BstX2I RGATCY 3 cut(s) 421, 625, 1525
BstXI CCANNNNNNTGG 1 cut(s) 1011
BstYI RGATCY 3 cut(s) 421, 625, 1525
BstZ17I GTATAC 1 cut(s) 325
BstZI CGGCCG 1 cut(s) 1217
Bsu36I CCTNAGG 1 cut(s) 282
BsuI GTATCC 1 cut(s) 179
BsuRI GGCC 9 cut(s) 39, 164, 391, 939, 1046, 1064, 1175, 1219, 1365
BtgI CCRYGG 4 cut(s) 181, 1041, 1081, 1508
BtgZI GCGATG 2 cut(s) 151, 1051
BtrI CACGTC 1 cut(s) 952
BtsCI GGATG 4 cut(s) 522, 1422, 1698, 1812
BtsI GCAGTG 1 cut(s) 1574
BtsIMutI CAGTG 5 cut(s) 747, 814, 1574, 1650, 1717
Cac8I GCNNGC 1 cut(s) 1221
CaiI CAGNNNCTG 1 cut(s) 1376
CfoI GCGC 3 cut(s) 126, 1026, 1072
Cfr10I RCCGGY 4 cut(s) 152, 319, 968, 1219
Cfr13I GGNCC 5 cut(s) 71, 162, 904, 971, 1062
Cfr42I CCGCGG 2 cut(s) 184, 1084
CseI GACGC 3 cut(s) 158, 495, 1395
Csp6I GTAC 7 cut(s) 22, 32, 922, 932, 1015, 1087, 1549
CspAI ACCGGT 2 cut(s) 319, 968
CviAII CATG 8 cut(s) 50, 95, 233, 574, 935, 1133, 1474, 1509
CviQI GTAC 7 cut(s) 22, 32, 922, 932, 1015, 1087, 1549
DdeI CTNAG 4 cut(s) 282, 558, 618, 1518
DinI GGCGCC 2 cut(s) 125, 1025
DpnI GATC 8 cut(s) 137, 423, 572, 627, 1472, 1527, 1626, 1740
DpnII GATC 8 cut(s) 135, 421, 570, 625, 1470, 1525, 1624, 1738
EaeI YGGCCR 4 cut(s) 1044, 1173, 1217, 1363
EagI CGGCCG 1 cut(s) 1217
Eam1104I CTCTTC 2 cut(s) 606, 1506
EarI CTCTTC 2 cut(s) 606, 1506
Ecl136II GAGCTC 1 cut(s) 1810
EclXI CGGCCG 1 cut(s) 1217
Eco105I TACGTA 2 cut(s) 25, 925
Eco130I CCWWGG 5 cut(s) 608, 1153, 1182, 1508, 1825
Eco147I AGGCCT 1 cut(s) 39
Eco24I GRGCYC 2 cut(s) 1216, 1812
Eco31I GGTCTC 1 cut(s) 1261
Eco47I GGWCC 3 cut(s) 71, 904, 971
Eco52I CGGCCG 1 cut(s) 1217
Eco53kI GAGCTC 1 cut(s) 1810
Eco57I CTGAAG 5 cut(s) 62, 450, 492, 1350, 1782
Eco81I CCTNAGG 1 cut(s) 282
Eco88I CYCGRG 2 cut(s) 215, 1258
EcoICRI GAGCTC 1 cut(s) 1810
EcoO109I RGGNCCY 1 cut(s) 71
EcoRI GAATTC 3 cut(s) 258, 1158, 1318
EcoRII CCWGG 7 cut(s) 119, 460, 564, 784, 1360, 1464, 1687
EcoT14I CCWWGG 5 cut(s) 608, 1153, 1182, 1508, 1825
EcoT38I GRGCYC 2 cut(s) 1216, 1812
EgeI GGCGCC 2 cut(s) 125, 1025
EheI GGCGCC 2 cut(s) 125, 1025
ErhI CCWWGG 5 cut(s) 608, 1153, 1182, 1508, 1825
FaeI CATG 8 cut(s) 53, 98, 236, 577, 938, 1136, 1477, 1512
FalI AAGNNNNNCTT 2 cut(s) 1112, 1144
FaqI GGGAC 5 cut(s) 57, 815, 957, 1290, 1718
FatI CATG 8 cut(s) 49, 94, 232, 573, 934, 1132, 1473, 1508
FauI CCCGC 3 cut(s) 210, 447, 1076
FauNDI CATATG 3 cut(s) 412, 637, 1537
FblI GTMKAC 2 cut(s) 324, 1493
Fnu4HI GCNGC 2 cut(s) 555, 1455
FokI GGATG 4 cut(s) 509, 1409, 1705, 1799
FriOI GRGCYC 2 cut(s) 1216, 1812
Fsp4HI GCNGC 2 cut(s) 555, 1455
FspBI CTAG 1 cut(s) 315
GlaI GCGC 3 cut(s) 125, 1025, 1071
GluI GCNGC 2 cut(s) 555, 1455
GsuI CTGGAG 1 cut(s) 1763
HaeII RGCGCY 2 cut(s) 127, 1027
HaeIII GGCC 9 cut(s) 39, 164, 391, 939, 1046, 1064, 1175, 1219, 1365
HgaI GACGC 3 cut(s) 158, 495, 1395
HhaI GCGC 3 cut(s) 126, 1026, 1072
Hin1I GRCGYC 5 cut(s) 124, 150, 487, 1024, 1387
Hin1II CATG 8 cut(s) 53, 98, 236, 577, 938, 1136, 1477, 1512
Hin6I GCGC 3 cut(s) 124, 1024, 1070
HinP1I GCGC 3 cut(s) 124, 1024, 1070
HinfI GANTC 7 cut(s) 10, 587, 722, 910, 999, 1092, 1487
HphI GGTGA 4 cut(s) 5, 879, 1606, 1810
Hpy166II GTNNAC 9 cut(s) 325, 520, 586, 594, 615, 1442, 1486, 1494, 1515
Hpy188I TCNGA 8 cut(s) 65, 199, 299, 668, 965, 1099, 1413, 1568
Hpy8I GTNNAC 9 cut(s) 325, 520, 586, 594, 615, 1442, 1486, 1494, 1515
Hpy99I CGWCG 2 cut(s) 152, 956
HpyAV CCTTC 9 cut(s) 347, 425, 757, 854, 1138, 1247, 1325, 1757, 1831
HpyCH4III ACNGT 6 cut(s) 31, 505, 809, 931, 1633, 1712
HpyCH4IV ACGT 4 cut(s) 24, 78, 924, 951
HpyCH4V TGCA 9 cut(s) 94, 343, 497, 679, 994, 1243, 1397, 1457, 1579
HpyF10VI GCNNNNNNNGC 1 cut(s) 1220
HpyF3I CTNAG 4 cut(s) 282, 558, 618, 1518
HpySE526I ACGT 4 cut(s) 24, 78, 924, 951
Hsp92I GRCGYC 5 cut(s) 124, 150, 487, 1024, 1387
Hsp92II CATG 8 cut(s) 53, 98, 236, 577, 938, 1136, 1477, 1512
HspAI GCGC 3 cut(s) 124, 1024, 1070
KasI GGCGCC 2 cut(s) 123, 1023
KroI GCCGGC 1 cut(s) 1219
KroNI GCCGGC 1 cut(s) 1221
KspI CCGCGG 2 cut(s) 184, 1084
Kzo9I GATC 8 cut(s) 135, 421, 570, 625, 1470, 1525, 1624, 1738
LmnI GCTCC 4 cut(s) 51, 175, 311, 1211
Lsp1109I GCAGC 2 cut(s) 541, 1441
LweI GCATC 4 cut(s) 256, 484, 1156, 1384
MaeI CTAG 1 cut(s) 315
MaeII ACGT 4 cut(s) 24, 78, 924, 951
MaeIII GTNAC 4 cut(s) 25, 367, 925, 1267
MalI GATC 8 cut(s) 137, 423, 572, 627, 1472, 1527, 1626, 1740
MboI GATC 8 cut(s) 135, 421, 570, 625, 1470, 1525, 1624, 1738
MboII GAAGA 7 cut(s) 232, 593, 635, 1132, 1493, 1535, 1616
MfeI CAATTG 1 cut(s) 1787
MflI RGATCY 3 cut(s) 421, 625, 1525
MhlI GDGCHC 3 cut(s) 716, 1216, 1812
MlsI TGGCCA 2 cut(s) 1046, 1175
MluCI AATT 6 cut(s) 258, 779, 1158, 1318, 1682, 1787
MluNI TGGCCA 2 cut(s) 1046, 1175
Mly113I GGCGCC 2 cut(s) 124, 1024
MlyI GAGTC 3 cut(s) 581, 1086, 1481
MmeI TCCRAC 3 cut(s) 222, 1122, 1652
Mox20I TGGCCA 2 cut(s) 1046, 1175
MroNI GCCGGC 1 cut(s) 1219
MscI TGGCCA 2 cut(s) 1046, 1175
MseI TTAA 5 cut(s) 752, 818, 1599, 1635, 1803
Msp20I TGGCCA 2 cut(s) 1046, 1175
MspA1I CMGCKG 2 cut(s) 183, 1083
MunI CAATTG 1 cut(s) 1787
MvaI CCWGG 7 cut(s) 121, 462, 566, 786, 1362, 1466, 1689
MvnI CGCG 3 cut(s) 183, 1070, 1083
MwoI GCNNNNNNNGC 1 cut(s) 1220
NaeI GCCGGC 1 cut(s) 1221
NarI GGCGCC 2 cut(s) 124, 1024
NciI CCSGG 6 cut(s) 104, 161, 1054, 1061, 1216, 1367
NcoI CCATGG 1 cut(s) 1508
NdeI CATATG 3 cut(s) 412, 637, 1537
NdeII GATC 8 cut(s) 135, 421, 570, 625, 1470, 1525, 1624, 1738
NgoMIV GCCGGC 1 cut(s) 1219
NlaIII CATG 8 cut(s) 53, 98, 236, 577, 938, 1136, 1477, 1512
NlaIV GGNNCC 8 cut(s) 73, 125, 459, 967, 973, 1025, 1058, 1213
PceI AGGCCT 1 cut(s) 39
PcsI WCGNNNNNNNCGW 3 cut(s) 144, 195, 1095
PdiI GCCGGC 1 cut(s) 1221
PfeI GAWTC 4 cut(s) 10, 722, 910, 999
PflMI CCANNNNNTGG 1 cut(s) 1033
PfoI TCCNGGA 1 cut(s) 102
PinAI ACCGGT 2 cut(s) 319, 968
PkrI GCNGC 2 cut(s) 556, 1456
PleI GAGTC 3 cut(s) 581, 1086, 1481
PluTI GGCGCC 2 cut(s) 127, 1027
PpsI GAGTC 3 cut(s) 581, 1086, 1481
Ppu21I YACGTR 2 cut(s) 25, 925
PpuMI RGGWCCY 1 cut(s) 71
PshBI ATTAAT 1 cut(s) 1803
Psp124BI GAGCTC 1 cut(s) 1812
Psp5II RGGWCCY 1 cut(s) 71
Psp6I CCWGG 7 cut(s) 119, 460, 564, 784, 1360, 1464, 1687
PspGI CCWGG 7 cut(s) 119, 460, 564, 784, 1360, 1464, 1687
PspN4I GGNNCC 8 cut(s) 73, 125, 459, 967, 973, 1025, 1058, 1213
PspPI GGNCC 5 cut(s) 71, 162, 904, 971, 1062
PspPPI RGGWCCY 1 cut(s) 71
PstI CTGCAG 1 cut(s) 1459
PstNI CAGNNNCTG 1 cut(s) 1376
PsuI RGATCY 3 cut(s) 421, 625, 1525
RsaI GTAC 7 cut(s) 23, 33, 923, 933, 1016, 1088, 1550
RsaNI GTAC 7 cut(s) 22, 32, 922, 932, 1015, 1087, 1549
SacI GAGCTC 1 cut(s) 1812
SacII CCGCGG 2 cut(s) 184, 1084
SaqAI TTAA 5 cut(s) 752, 818, 1599, 1635, 1803
SatI GCNGC 2 cut(s) 555, 1455
Sau3AI GATC 8 cut(s) 135, 421, 570, 625, 1470, 1525, 1624, 1738
Sau96I GGNCC 5 cut(s) 71, 162, 904, 971, 1062
SchI GAGTC 3 cut(s) 581, 1086, 1481
SduI GDGCHC 3 cut(s) 716, 1216, 1812
SfaNI GCATC 4 cut(s) 256, 484, 1156, 1384
SfcI CTRYAG 1 cut(s) 1455
SfoI GGCGCC 2 cut(s) 125, 1025
Sfr303I CCGCGG 2 cut(s) 184, 1084
SgrBI CCGCGG 2 cut(s) 184, 1084
SinI GGWCC 3 cut(s) 71, 904, 971
SmlI CTYRAG 1 cut(s) 532
SmoI CTYRAG 1 cut(s) 532
SnaBI TACGTA 2 cut(s) 25, 925
Sse9I AATT 6 cut(s) 258, 779, 1158, 1318, 1682, 1787
SseBI AGGCCT 1 cut(s) 39
SsiI CCGC 7 cut(s) 181, 183, 203, 454, 1081, 1083, 1572
SspDI GGCGCC 2 cut(s) 123, 1023
SspI AATATT 1 cut(s) 1417
SspMI CTAG 1 cut(s) 315
SstI GAGCTC 1 cut(s) 1812
StuI AGGCCT 1 cut(s) 39
StyI CCWWGG 5 cut(s) 608, 1153, 1182, 1508, 1825
TaaI ACNGT 6 cut(s) 31, 505, 809, 931, 1633, 1712
TaiI ACGT 4 cut(s) 27, 81, 927, 954
TaqI TCGA 1 cut(s) 1164
TasI AATT 6 cut(s) 258, 779, 1158, 1318, 1682, 1787
TfiI GAWTC 4 cut(s) 10, 722, 910, 999
Tru1I TTAA 5 cut(s) 752, 818, 1599, 1635, 1803
Tru9I TTAA 5 cut(s) 752, 818, 1599, 1635, 1803
TscAI CASTG 5 cut(s) 747, 814, 1581, 1650, 1717
TseI GCWGC 2 cut(s) 554, 1454
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 3 cut(s) 204, 1011, 1104
TspRI CASTG 5 cut(s) 747, 814, 1581, 1650, 1717
Van91I CCANNNNNTGG 1 cut(s) 1033
VpaK11BI GGWCC 3 cut(s) 71, 904, 971
VspI ATTAAT 1 cut(s) 1803
XapI RAATTY 5 cut(s) 258, 779, 1158, 1318, 1682
XcmI CCANNNNNNNNNTGG 1 cut(s) 706
XmiI GTMKAC 2 cut(s) 324, 1493
XspI CTAG 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.