pycom15g14430

glycerol-3-phosphate transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0001726
Physical Location & Seq
Forward (+)
9850245 .. 9851906
1662 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g14430.1

Sequence Viewer

Length: 1515 bp
ATGCAATCCAAAACCCTAACCCTAGCTCCAGCTCTCAATTTTTTTCCAAATCTCAAACCTCCACACAAAACCCTAGCTTTCCATCAAATTTCAGTCCTAATCATCACCTTCCTCGCTTATGCTTCCTTCCATGCCTCCAGAAAGCCCCCAAGCATTGTCAAGAGCGTGCTTGGGCCGGCATTTCAGGCCAATTCAAGCTCCGTCGACACGGGGTGGGCTCCCTTTGATGGTCCCCGGGGCACTCACCGGCTAGGAGAGCTTGATCGATCAGTCAATGTTGCGTTTCTTTCCGCGTATTCGATTGGAATGTACTTTGCAGGACATGTCGGTGATCGGATTGATTTGAGGCTGTTTCTTGTATTTGGGATGACGTGTAGTGGCATTTTAACAATATTTTTCGGGTTAGGATATTGGTTTGATGTTCATGTATTGGGGTACTTTATGGCGGTTCAAGTTCTTTGTGGATTGGTTCAGTCGATTGGGTGGCCTTGTGTGGTGGCTATTGTGGGAAACTGGTTTGAGAAAGGGAAGAGGGGGTTGATCATGGGGGTGTGGAGCTCACATACCTCGGTTGGAAACATCATTGGGTCGGTTGTGGCATCAGGGGTTTTGGAATTCGGATGGGGTTGGTCCTTTGTGGTGCCCGGGGTTTTGGTGATTTTGGCTGGGATTGTGGTGTTTCTGTTTCTTCCCGTGTGTCCAGAAGACTTGGGGTTTGAGTCTCCAGTGAAGGAGATTCAGATGAATGTGGAAGTTAATGGCGTGGAGAATTTGGAGGGGAAAGTAGAATCAGAGGAAGCAGGGCTTCTTGGAACAGAGTATGCAGATGCAGATGCAGACACAGGTTCTTTGGCTGCAATTGGGTTTCTGGAGGCATGGAGGTTACCGGGTGTGGCGCCATTTGCTTTCTGCCTCTTCTTTTTGAAGCTTGTGTCTTACACTTTTCTGTACTGGTTGCCCTTTTACATAAGGCACACAGCTGTTGCCGGCGTGCATTTGTCACACAAAACTGCCGGGAACCTTTCAGCCATATTCGATATTGGAGGTGTCCTTGGCGGAATTTTAGCAGGATTAATAGCTGATATGATAGAAGCTCAAGCTGTAACCTCAATCGTGTTTTTGTTACTTTCCATTCCAGCCCTTGTTCTCTACCGGCTTTATGGCAGCCTATCGATGGTCACCAACATTCTTTTGATGTTTCTTTCTGGATTGCTGGTGAATGGCCCGTATTCACTCATCACAACAGCGGTTGCAGCTGATCTTGGTACGCAAACCACGATCATAGGAAATTCCAGAGCATTAGCTACTGTGACGGCAATCATAGACGGAACAGGCTCGGTTGGGGCAGCTCTTGGCCCGCTTTTGGCCGGGTATATCTCCACGACGGGGTGGAACAACGTGTTTATTATGCTAATTCTTGCTATTTTCTGTGCAACTTTGTTTTTGATTCGGATTGCGAGAACCGAGATTAAAGGGAAATTGAATGAGGGAAATGGTATTTGTATAGCGGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0042592 GO:0048878 GO:0050801 GO:0055062 GO:0055081 GO:0055083 GO:0065007 GO:0065008 GO:0072505 GO:0072506 GO:0098771
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MFS_1

Protein Analysis

505

Amino Acids

53.79

Weight (kDa)

6.06

Isoelectric Point (pI)

25.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 91 - 431 2.9e-35 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 640, 895
AccI GTMKAC 1 cut(s) 204
AccII CGCG 1 cut(s) 293
AciI CCGC 6 cut(s) 291, 446, 1056, 1247, 1358, 1508
AcoI YGGCCR 1 cut(s) 1365
AcsI RAATTY 5 cut(s) 87, 614, 769, 1059, 1288
AcyI GRCGYC 1 cut(s) 896
AdeI CACNNNGTG 1 cut(s) 213
AfaI GTAC 4 cut(s) 311, 437, 950, 1267
AfiI CCNNNNNNNGG 4 cut(s) 227, 1174, 1363, 1386
AflIII ACRYGT 3 cut(s) 322, 371, 1398
AgsI TTSAA 4 cut(s) 195, 452, 925, 1483
AjiI CACGTC 1 cut(s) 372
Alw21I GWGCWC 1 cut(s) 560
Alw26I GTCTC 1 cut(s) 726
Ama87I CYCGRG 2 cut(s) 234, 644
AoxI GGCC 6 cut(s) 173, 186, 485, 1222, 1354, 1365
ApeKI GCWGC 4 cut(s) 854, 1164, 1253, 1346
ApoI RAATTY 5 cut(s) 87, 614, 769, 1059, 1288
ArsI GACNNNNNNTTYG 2 cut(s) 698, 730
AseI ATTAAT 1 cut(s) 1073
AspLEI GCGC 1 cut(s) 898
AspS9I GGNCC 5 cut(s) 173, 230, 630, 1223, 1355
AsuC2I CCSGG 7 cut(s) 235, 236, 645, 646, 888, 1015, 1369
AsuHPI GGTGA 6 cut(s) 97, 236, 341, 667, 1171, 1228
AvaI CYCGRG 2 cut(s) 234, 644
AvaII GGWCC 2 cut(s) 230, 630
BaeGI GKGCMC 2 cut(s) 242, 645
BanI GGYRCC 2 cut(s) 640, 895
BanII GRGCYC 2 cut(s) 220, 560
BbsI GAAGAC 1 cut(s) 711
Bbv12I GWGCWC 1 cut(s) 560
BbvI GCAGC 4 cut(s) 841, 1176, 1265, 1358
BccI CCATC 4 cut(s) 90, 221, 615, 1168
BceAI ACGGC 1 cut(s) 1329
BclI TGATCA 1 cut(s) 540
BcnI CCSGG 7 cut(s) 235, 236, 645, 646, 888, 1015, 1369
BcoDI GTCTC 1 cut(s) 726
BfaI CTAG 3 cut(s) 23, 74, 251
BfoI RGCGCY 1 cut(s) 899
BisI GCNGC 5 cut(s) 855, 1165, 1254, 1347, 1509
BlsI GCNGC 5 cut(s) 856, 1166, 1255, 1348, 1510
Bme1390I CCNGG 7 cut(s) 235, 236, 645, 646, 888, 1015, 1369
Bme18I GGWCC 2 cut(s) 230, 630
BmeT110I CYCGRG 2 cut(s) 234, 644
BmgBI CACGTC 1 cut(s) 372
BmgT120I GGNCC 5 cut(s) 173, 230, 630, 1223, 1355
BmiI GGNNCC 5 cut(s) 219, 232, 642, 897, 1019
BmrFI CCNGG 7 cut(s) 235, 236, 645, 646, 888, 1015, 1369
BmsI GCATC 3 cut(s) 608, 817, 823
BpiI GAAGAC 1 cut(s) 711
BpmI CTGGAG 4 cut(s) 12, 121, 708, 890
BpuEI CTTGAG 1 cut(s) 1080
BpuMI CCSGG 7 cut(s) 235, 236, 645, 646, 888, 1015, 1369
Bsa29I ATCGAT 2 cut(s) 265, 1172
BsaHI GRCGYC 1 cut(s) 896
BsaJI CCNNGG 7 cut(s) 233, 234, 235, 567, 644, 645, 1051
BsaXI ACNNNNNCTCC 2 cut(s) 10, 40
Bsc4I CCNNNNNNNGG 4 cut(s) 227, 1174, 1363, 1386
Bse118I RCCGGY 4 cut(s) 175, 246, 986, 1152
Bse1I ACTGG 3 cut(s) 518, 725, 956
BseCI ATCGAT 2 cut(s) 265, 1172
BseDI CCNNGG 7 cut(s) 233, 234, 235, 567, 644, 645, 1051
BseGI GGATG 2 cut(s) 372, 626
BseLI CCNNNNNNNGG 4 cut(s) 227, 1174, 1363, 1386
BseNI ACTGG 3 cut(s) 518, 725, 956
BseSI GKGCMC 2 cut(s) 242, 645
BseXI GCAGC 4 cut(s) 841, 1176, 1265, 1358
BseYI CCCAGC 1 cut(s) 665
Bsh1236I CGCG 1 cut(s) 293
BshFI GGCC 6 cut(s) 175, 188, 487, 1224, 1356, 1367
BshNI GGYRCC 2 cut(s) 640, 895
BshVI ATCGAT 2 cut(s) 265, 1172
BsiHKAI GWGCWC 1 cut(s) 560
BsiHKCI CYCGRG 2 cut(s) 234, 644
BsiSI CCGG 9 cut(s) 176, 235, 247, 645, 887, 987, 1014, 1153, 1368
BslFI GGGAC 1 cut(s) 216
BslI CCNNNNNNNGG 4 cut(s) 227, 1174, 1363, 1386
BsmAI GTCTC 1 cut(s) 726
BsmFI GGGAC 1 cut(s) 216
BsnI GGCC 6 cut(s) 175, 188, 487, 1224, 1356, 1367
BsoBI CYCGRG 2 cut(s) 234, 644
Bsp1286I GDGCHC 4 cut(s) 220, 242, 560, 645
Bsp143I GATC 6 cut(s) 262, 266, 331, 540, 1258, 1278
BspACI CCGC 6 cut(s) 291, 446, 1056, 1247, 1358, 1508
BspANI GGCC 6 cut(s) 175, 188, 487, 1224, 1356, 1367
BspDI ATCGAT 2 cut(s) 265, 1172
BspFNI CGCG 1 cut(s) 293
BspLI GGNNCC 5 cut(s) 219, 232, 642, 897, 1019
BspT107I GGYRCC 2 cut(s) 640, 895
BsrFI RCCGGY 4 cut(s) 175, 246, 986, 1152
BsrI ACTGG 3 cut(s) 518, 725, 956
BssAI RCCGGY 4 cut(s) 175, 246, 986, 1152
BssECI CCNNGG 7 cut(s) 233, 234, 235, 567, 644, 645, 1051
BssMI GATC 6 cut(s) 262, 266, 331, 540, 1258, 1278
BssNI GRCGYC 1 cut(s) 896
BssT1I CCWWGG 1 cut(s) 1051
Bst4CI ACNGT 1 cut(s) 1309
Bst6I CTCTTC 2 cut(s) 524, 920
BstACI GRCGYC 1 cut(s) 896
BstC8I GCNNGC 5 cut(s) 167, 177, 988, 992, 1358
BstEII GGTNACC 2 cut(s) 882, 1177
BstF5I GGATG 2 cut(s) 372, 626
BstFNI CGCG 1 cut(s) 293
BstH2I RGCGCY 1 cut(s) 899
BstHHI GCGC 1 cut(s) 898
BstKTI GATC 6 cut(s) 265, 269, 334, 543, 1261, 1281
BstMAI GTCTC 1 cut(s) 726
BstMBI GATC 6 cut(s) 262, 266, 331, 540, 1258, 1278
BstMWI GCNNNNNNNGC 4 cut(s) 185, 256, 902, 1253
BstNSI RCATGY 1 cut(s) 326
BstPI GGTNACC 2 cut(s) 882, 1177
BstSCI CCNGG 7 cut(s) 233, 234, 643, 644, 886, 1013, 1367
BstSLI GKGCMC 2 cut(s) 242, 645
BstUI CGCG 1 cut(s) 293
BstV1I GCAGC 4 cut(s) 841, 1176, 1265, 1358
BstV2I GAAGAC 1 cut(s) 711
Bsu15I ATCGAT 2 cut(s) 265, 1172
BsuRI GGCC 6 cut(s) 175, 188, 487, 1224, 1356, 1367
BsuTUI ATCGAT 2 cut(s) 265, 1172
BtrI CACGTC 1 cut(s) 372
BtsCI GGATG 2 cut(s) 372, 626
BtsIMutI CAGTG 1 cut(s) 732
Cac8I GCNNGC 5 cut(s) 167, 177, 988, 992, 1358
CfoI GCGC 1 cut(s) 898
Cfr10I RCCGGY 4 cut(s) 175, 246, 986, 1152
Cfr13I GGNCC 5 cut(s) 173, 230, 630, 1223, 1355
Cfr9I CCCGGG 2 cut(s) 234, 644
ClaI ATCGAT 2 cut(s) 265, 1172
Csp6I GTAC 4 cut(s) 310, 436, 949, 1266
CviAII CATG 5 cut(s) 131, 323, 425, 544, 876
CviQI GTAC 4 cut(s) 310, 436, 949, 1266
DinI GGCGCC 1 cut(s) 897
DpnI GATC 6 cut(s) 264, 268, 333, 542, 1260, 1280
DpnII GATC 6 cut(s) 262, 266, 331, 540, 1258, 1278
DraIII CACNNNGTG 1 cut(s) 213
EaeI YGGCCR 1 cut(s) 1365
Eam1104I CTCTTC 2 cut(s) 524, 920
EarI CTCTTC 2 cut(s) 524, 920
EciI GGCGGA 1 cut(s) 1071
Ecl136II GAGCTC 1 cut(s) 558
Eco130I CCWWGG 1 cut(s) 1051
Eco24I GRGCYC 2 cut(s) 220, 560
Eco47I GGWCC 2 cut(s) 230, 630
Eco53kI GAGCTC 1 cut(s) 558
Eco88I CYCGRG 2 cut(s) 234, 644
Eco91I GGTNACC 2 cut(s) 882, 1177
EcoICRI GAGCTC 1 cut(s) 558
EcoO65I GGTNACC 2 cut(s) 882, 1177
EcoRI GAATTC 1 cut(s) 614
EcoT14I CCWWGG 1 cut(s) 1051
EcoT38I GRGCYC 2 cut(s) 220, 560
EgeI GGCGCC 1 cut(s) 897
EheI GGCGCC 1 cut(s) 897
ErhI CCWWGG 1 cut(s) 1051
FaeI CATG 5 cut(s) 134, 326, 428, 547, 879
FalI AAGNNNNNCTT 2 cut(s) 789, 821
FaqI GGGAC 1 cut(s) 216
FatI CATG 5 cut(s) 130, 322, 424, 543, 875
FauI CCCGC 1 cut(s) 1365
FbaI TGATCA 1 cut(s) 540
FblI GTMKAC 1 cut(s) 204
Fnu4HI GCNGC 5 cut(s) 855, 1165, 1254, 1347, 1509
FokI GGATG 2 cut(s) 379, 633
FriOI GRGCYC 2 cut(s) 220, 560
Fsp4HI GCNGC 5 cut(s) 855, 1165, 1254, 1347, 1509
FspBI CTAG 3 cut(s) 23, 74, 251
GlaI GCGC 1 cut(s) 897
GluI GCNGC 5 cut(s) 855, 1165, 1254, 1347, 1509
GsaI CCCAGC 1 cut(s) 669
GsuI CTGGAG 4 cut(s) 12, 121, 708, 890
HaeII RGCGCY 1 cut(s) 899
HaeIII GGCC 6 cut(s) 175, 188, 487, 1224, 1356, 1367
HapII CCGG 9 cut(s) 176, 235, 247, 645, 887, 987, 1014, 1153, 1368
HhaI GCGC 1 cut(s) 898
Hin1I GRCGYC 1 cut(s) 896
Hin1II CATG 5 cut(s) 134, 326, 428, 547, 879
Hin6I GCGC 1 cut(s) 896
HinP1I GCGC 1 cut(s) 896
HincII GTYRAC 1 cut(s) 205
HindII GTYRAC 1 cut(s) 205
HindIII AAGCTT 1 cut(s) 926
HinfI GANTC 4 cut(s) 719, 736, 788, 1447
HpaII CCGG 9 cut(s) 176, 235, 247, 645, 887, 987, 1014, 1153, 1368
HphI GGTGA 6 cut(s) 97, 236, 341, 667, 1171, 1228
Hpy166II GTNNAC 1 cut(s) 205
Hpy188I TCNGA 5 cut(s) 336, 620, 741, 793, 1452
Hpy188III TCNNGA 6 cut(s) 138, 160, 701, 869, 1206, 1293
Hpy8I GTNNAC 1 cut(s) 205
Hpy99I CGWCG 2 cut(s) 206, 1387
HpyAV CCTTC 3 cut(s) 118, 136, 724
HpyCH4III ACNGT 1 cut(s) 1309
HpyCH4IV ACGT 2 cut(s) 371, 1398
HpyCH4V TGCA 9 cut(s) 4, 317, 824, 830, 836, 857, 994, 1253, 1433
HpyF10VI GCNNNNNNNGC 4 cut(s) 185, 256, 902, 1253
HpySE526I ACGT 2 cut(s) 371, 1398
Hsp92I GRCGYC 1 cut(s) 896
Hsp92II CATG 5 cut(s) 134, 326, 428, 547, 879
HspAI GCGC 1 cut(s) 896
KasI GGCGCC 1 cut(s) 895
KroI GCCGGC 2 cut(s) 175, 986
KroNI GCCGGC 2 cut(s) 177, 988
Ksp22I TGATCA 1 cut(s) 540
Kzo9I GATC 6 cut(s) 262, 266, 331, 540, 1258, 1278
LmnI GCTCC 4 cut(s) 31, 203, 223, 555
Lsp1109I GCAGC 4 cut(s) 841, 1176, 1265, 1358
LweI GCATC 3 cut(s) 608, 817, 823
MaeI CTAG 3 cut(s) 23, 74, 251
MaeII ACGT 2 cut(s) 371, 1398
MaeIII GTNAC 6 cut(s) 882, 999, 1102, 1122, 1177, 1309
MalI GATC 6 cut(s) 264, 268, 333, 542, 1260, 1280
MboI GATC 6 cut(s) 262, 266, 331, 540, 1258, 1278
MboII GAAGA 4 cut(s) 541, 680, 716, 907
MfeI CAATTG 1 cut(s) 858
MhlI GDGCHC 4 cut(s) 220, 242, 560, 645
Mly113I GGCGCC 1 cut(s) 896
MlyI GAGTC 1 cut(s) 728
MmeI TCCRAC 1 cut(s) 553
MroNI GCCGGC 2 cut(s) 175, 986
MseI TTAA 4 cut(s) 386, 756, 1073, 1470
MslI CAYNNNNRTG 2 cut(s) 327, 548
MspA1I CMGCKG 3 cut(s) 980, 1247, 1256
MspI CCGG 9 cut(s) 176, 235, 247, 645, 887, 987, 1014, 1153, 1368
MspR9I CCNGG 7 cut(s) 235, 236, 645, 646, 888, 1015, 1369
MunI CAATTG 1 cut(s) 858
MvnI CGCG 1 cut(s) 293
MwoI GCNNNNNNNGC 4 cut(s) 185, 256, 902, 1253
NaeI GCCGGC 2 cut(s) 177, 988
NarI GGCGCC 1 cut(s) 896
NciI CCSGG 7 cut(s) 235, 236, 645, 646, 888, 1015, 1369
NdeII GATC 6 cut(s) 262, 266, 331, 540, 1258, 1278
NgoMIV GCCGGC 2 cut(s) 175, 986
NlaIII CATG 5 cut(s) 134, 326, 428, 547, 879
NlaIV GGNNCC 5 cut(s) 219, 232, 642, 897, 1019
NmuCI GTSAC 3 cut(s) 999, 1177, 1309
NspI RCATGY 1 cut(s) 326
PciI ACATGT 1 cut(s) 322
PcsI WCGNNNNNNNCGW 1 cut(s) 1274
PdiI GCCGGC 2 cut(s) 177, 988
PfeI GAWTC 3 cut(s) 736, 788, 1447
PkrI GCNGC 5 cut(s) 856, 1166, 1255, 1348, 1510
PleI GAGTC 1 cut(s) 727
PluTI GGCGCC 1 cut(s) 899
PpsI GAGTC 1 cut(s) 727
PscI ACATGT 1 cut(s) 322
PshBI ATTAAT 1 cut(s) 1073
Psp124BI GAGCTC 1 cut(s) 560
PspEI GGTNACC 2 cut(s) 882, 1177
PspFI CCCAGC 1 cut(s) 665
PspN4I GGNNCC 5 cut(s) 219, 232, 642, 897, 1019
PspPI GGNCC 5 cut(s) 173, 230, 630, 1223, 1355
PvuII CAGCTG 2 cut(s) 980, 1256
RsaI GTAC 4 cut(s) 311, 437, 950, 1267
RsaNI GTAC 4 cut(s) 310, 436, 949, 1266
RseI CAYNNNNRTG 2 cut(s) 327, 548
SacI GAGCTC 1 cut(s) 560
SalI GTCGAC 1 cut(s) 203
SaqAI TTAA 4 cut(s) 386, 756, 1073, 1470
SatI GCNGC 5 cut(s) 855, 1165, 1254, 1347, 1509
Sau3AI GATC 6 cut(s) 262, 266, 331, 540, 1258, 1278
Sau96I GGNCC 5 cut(s) 173, 230, 630, 1223, 1355
SchI GAGTC 1 cut(s) 728
ScrFI CCNGG 7 cut(s) 235, 236, 645, 646, 888, 1015, 1369
SduI GDGCHC 4 cut(s) 220, 242, 560, 645
SfaNI GCATC 3 cut(s) 608, 817, 823
SfoI GGCGCC 1 cut(s) 897
SinI GGWCC 2 cut(s) 230, 630
SmaI CCCGGG 2 cut(s) 236, 646
SmiMI CAYNNNNRTG 2 cut(s) 327, 548
SmlI CTYRAG 1 cut(s) 1095
SmoI CTYRAG 1 cut(s) 1095
SsiI CCGC 6 cut(s) 291, 446, 1056, 1247, 1358, 1508
SspDI GGCGCC 1 cut(s) 895
SspI AATATT 1 cut(s) 393
SspMI CTAG 3 cut(s) 23, 74, 251
SstI GAGCTC 1 cut(s) 560
StyD4I CCNGG 7 cut(s) 233, 234, 643, 644, 886, 1013, 1367
StyI CCWWGG 1 cut(s) 1051
TaaI ACNGT 1 cut(s) 1309
TaiI ACGT 2 cut(s) 374, 1401
TaqI TCGA 6 cut(s) 204, 265, 299, 476, 1035, 1172
TatI WGTACW 2 cut(s) 309, 948
TauI GCSGC 1 cut(s) 1511
TfiI GAWTC 3 cut(s) 736, 788, 1447
Tru1I TTAA 4 cut(s) 386, 756, 1073, 1470
Tru9I TTAA 4 cut(s) 386, 756, 1073, 1470
TscAI CASTG 1 cut(s) 732
TseFI GTSAC 3 cut(s) 999, 1177, 1309
TseI GCWGC 4 cut(s) 854, 1164, 1253, 1346
Tsp45I GTSAC 3 cut(s) 999, 1177, 1309
TspDTI ATGAA 2 cut(s) 413, 758
TspGWI ACGGA 2 cut(s) 190, 1341
TspMI CCCGGG 2 cut(s) 234, 644
TspRI CASTG 1 cut(s) 732
VpaK11BI GGWCC 2 cut(s) 230, 630
VspI ATTAAT 1 cut(s) 1073
XapI RAATTY 5 cut(s) 87, 614, 769, 1059, 1288
XceI RCATGY 1 cut(s) 326
XmaI CCCGGG 2 cut(s) 234, 644
XmiI GTMKAC 1 cut(s) 204
XspI CTAG 3 cut(s) 23, 74, 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.