Rw5G029340

glycerol-3-phosphate transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0001726
Physical Location & Seq
Forward (+)
45002585 .. 45003250
666 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G029340.1

Sequence Viewer

Length: 666 bp
ATGGTGGAAGTACTGCTCGACGGGAACCGGAACAGGAACGTAATCGTAGACTTGGGCGTGTATTTCAATTTCTTCCCGACCCTAAAACCCCCAAACAAAACCCTAGCTTTCCATCAAATCTCATTCCTAATCATCACCTTCCTCGCCTACGCTTCCTTCCACGCCTCCAGAAAGCCCCCCAGCATTGTTAAGAGCGTTCTTGAGCCCAAACTCCAGTCCAATTCGAGCTCATTCGACACCGGGTGGGCTCCCTTTAATGGGCCTCAGGGCACCCACAGGCTCGGAGAACTTGATCTTGCATTTCTGTCTGCATATTCTATTGGGATGTATTTTGCAGGGCATGTTGGTGATAGGATTGATTTGAGGTTGTTTCTTGCTTATGGGATGTTGGGGAGTGGAGTTTTGACTTGTCTTTTCGGGTTAGGTTATTGGTGCAATGTGCATATGTTGCGGTATTTTGTGGGTGTGCAAGTTGTGTGTGGGTTGTTTCAGTCGATAGGTTGGCCTTGTGTTGTGGCAGTTGTGGGGTATTGGTTTGGGAAGACGAAGCGGGGGTTGATAATGGGGGTGTGGAGTTCACATACCTCGGTTGGGAACATTGTTGGATCGGTTATTGCTTCTGGAGTTTTGTGCCACTTTGTTTTTGATACGCATTGCCAGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0042592 GO:0048878 GO:0050801 GO:0055062 GO:0055081 GO:0055083 GO:0065007 GO:0065008 GO:0072505 GO:0072506 GO:0098771
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MFS_1

Protein Analysis

221

Amino Acids

24.37

Weight (kDa)

8.94

Isoelectric Point (pI)

23.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 97 - 210 2.2e-17 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 269
AccI GTMKAC 1 cut(s) 48
AciI CCGC 2 cut(s) 451, 550
AclWI GGATC 1 cut(s) 613
AdeI CACNNNGTG 1 cut(s) 243
AfaI GTAC 1 cut(s) 12
AfiI CCNNNNNNNGG 3 cut(s) 257, 258, 591
AgsI TTSAA 1 cut(s) 67
AluBI AGCT 2 cut(s) 107, 228
AluI AGCT 2 cut(s) 107, 228
Alw21I GWGCWC 1 cut(s) 230
AlwI GGATC 1 cut(s) 613
AoxI GGCC 2 cut(s) 260, 503
AspS9I GGNCC 1 cut(s) 260
AsuC2I CCSGG 1 cut(s) 241
AsuHPI GGTGA 2 cut(s) 127, 359
AxyI CCTNAGG 1 cut(s) 264
BaeGI GKGCMC 1 cut(s) 272
BanI GGYRCC 1 cut(s) 269
BanII GRGCYC 3 cut(s) 207, 230, 250
BbsI GAAGAC 1 cut(s) 548
Bbv12I GWGCWC 1 cut(s) 230
BccI CCATC 1 cut(s) 120
BcnI CCSGG 1 cut(s) 241
BfaI CTAG 1 cut(s) 104
BmcAI AGTACT 1 cut(s) 12
Bme1390I CCNGG 1 cut(s) 241
BmgT120I GGNCC 1 cut(s) 260
BmiI GGNNCC 3 cut(s) 26, 249, 271
BmrFI CCNGG 1 cut(s) 241
BpiI GAAGAC 1 cut(s) 548
BpmI CTGGAG 3 cut(s) 151, 197, 642
BpuEI CTTGAG 1 cut(s) 221
BpuMI CCSGG 1 cut(s) 241
BsaJI CCNNGG 1 cut(s) 585
BsaWI WCCGGW 1 cut(s) 27
Bsc4I CCNNNNNNNGG 3 cut(s) 257, 258, 591
Bse1I ACTGG 1 cut(s) 214
Bse21I CCTNAGG 1 cut(s) 264
Bse3DI GCAATG 2 cut(s) 442, 652
BseDI CCNNGG 1 cut(s) 585
BseGI GGATG 2 cut(s) 330, 390
BseLI CCNNNNNNNGG 3 cut(s) 257, 258, 591
BseMI GCAATG 2 cut(s) 442, 652
BseMII CTCAG 1 cut(s) 278
BseNI ACTGG 1 cut(s) 214
BseSI GKGCMC 1 cut(s) 272
BseYI CCCAGC 1 cut(s) 179
BshFI GGCC 2 cut(s) 262, 505
BshNI GGYRCC 1 cut(s) 269
BsiHKAI GWGCWC 1 cut(s) 230
BsiSI CCGG 2 cut(s) 28, 240
BslI CCNNNNNNNGG 3 cut(s) 257, 258, 591
BsnI GGCC 2 cut(s) 262, 505
Bsp1286I GDGCHC 4 cut(s) 207, 230, 250, 272
Bsp143I GATC 2 cut(s) 292, 605
BspACI CCGC 2 cut(s) 451, 550
BspANI GGCC 2 cut(s) 262, 505
BspCNI CTCAG 1 cut(s) 277
BspLI GGNNCC 3 cut(s) 26, 249, 271
BspPI GGATC 1 cut(s) 613
BspT107I GGYRCC 1 cut(s) 269
BsrDI GCAATG 2 cut(s) 442, 652
BsrI ACTGG 1 cut(s) 214
BssECI CCNNGG 1 cut(s) 585
BssMI GATC 2 cut(s) 292, 605
BstAPI GCANNNNNTGC 1 cut(s) 448
BstDEI CTNAG 1 cut(s) 264
BstF5I GGATG 2 cut(s) 330, 390
BstKTI GATC 2 cut(s) 295, 608
BstMBI GATC 2 cut(s) 292, 605
BstMWI GCNNNNNNNGC 1 cut(s) 448
BstNSI RCATGY 1 cut(s) 344
BstSCI CCNGG 1 cut(s) 239
BstSLI GKGCMC 1 cut(s) 272
BstV2I GAAGAC 1 cut(s) 548
Bsu36I CCTNAGG 1 cut(s) 264
BsuRI GGCC 2 cut(s) 262, 505
BtsCI GGATG 2 cut(s) 330, 390
Cfr13I GGNCC 1 cut(s) 260
Csp6I GTAC 1 cut(s) 11
CviAII CATG 1 cut(s) 341
CviJI RGCY 8 cut(s) 107, 175, 205, 228, 248, 262, 280, 505
CviKI_1 RGCY 8 cut(s) 107, 175, 205, 228, 248, 262, 280, 505
CviQI GTAC 1 cut(s) 11
DdeI CTNAG 1 cut(s) 264
DpnI GATC 2 cut(s) 294, 607
DpnII GATC 2 cut(s) 292, 605
DraIII CACNNNGTG 1 cut(s) 243
Ecl136II GAGCTC 1 cut(s) 228
Eco24I GRGCYC 3 cut(s) 207, 230, 250
Eco53kI GAGCTC 1 cut(s) 228
Eco81I CCTNAGG 1 cut(s) 264
EcoICRI GAGCTC 1 cut(s) 228
EcoT38I GRGCYC 3 cut(s) 207, 230, 250
FaeI CATG 1 cut(s) 344
FaiI YATR 6 cut(s) 313, 342, 381, 444, 446, 582
FatI CATG 1 cut(s) 340
FauI CCCGC 1 cut(s) 543
FauNDI CATATG 1 cut(s) 444
FblI GTMKAC 1 cut(s) 48
FokI GGATG 2 cut(s) 337, 397
FriOI GRGCYC 3 cut(s) 207, 230, 250
FspBI CTAG 1 cut(s) 104
GsaI CCCAGC 1 cut(s) 183
GsuI CTGGAG 3 cut(s) 151, 197, 642
HaeIII GGCC 2 cut(s) 262, 505
HapII CCGG 2 cut(s) 28, 240
Hin1II CATG 1 cut(s) 344
HpaII CCGG 2 cut(s) 28, 240
HphI GGTGA 2 cut(s) 127, 359
Hpy166II GTNNAC 2 cut(s) 49, 578
Hpy188I TCNGA 1 cut(s) 284
Hpy188III TCNNGA 4 cut(s) 76, 168, 200, 621
Hpy8I GTNNAC 2 cut(s) 49, 578
Hpy99I CGWCG 1 cut(s) 23
HpyAV CCTTC 2 cut(s) 148, 166
HpyCH4IV ACGT 1 cut(s) 39
HpyCH4V TGCA 6 cut(s) 299, 311, 335, 435, 442, 469
HpyF10VI GCNNNNNNNGC 1 cut(s) 448
HpyF3I CTNAG 1 cut(s) 264
HpySE526I ACGT 1 cut(s) 39
Hsp92II CATG 1 cut(s) 344
Kzo9I GATC 2 cut(s) 292, 605
LmnI GCTCC 1 cut(s) 253
MaeI CTAG 1 cut(s) 104
MaeII ACGT 1 cut(s) 39
MalI GATC 2 cut(s) 294, 607
MboI GATC 2 cut(s) 292, 605
MboII GAAGA 2 cut(s) 64, 553
MhlI GDGCHC 4 cut(s) 207, 230, 250, 272
MluCI AATT 2 cut(s) 67, 220
MmeI TCCRAC 1 cut(s) 583
MnlI CCTC 5 cut(s) 152, 175, 273, 357, 595
MseI TTAA 2 cut(s) 189, 255
MslI CAYNNNNRTG 1 cut(s) 345
MspI CCGG 2 cut(s) 28, 240
MspR9I CCNGG 1 cut(s) 241
MwoI GCNNNNNNNGC 1 cut(s) 448
NciI CCSGG 1 cut(s) 241
NdeI CATATG 1 cut(s) 444
NdeII GATC 2 cut(s) 292, 605
NlaIII CATG 1 cut(s) 344
NlaIV GGNNCC 3 cut(s) 26, 249, 271
NspI RCATGY 1 cut(s) 344
Psp124BI GAGCTC 1 cut(s) 230
PspFI CCCAGC 1 cut(s) 179
PspN4I GGNNCC 3 cut(s) 26, 249, 271
PspPI GGNCC 1 cut(s) 260
RsaI GTAC 1 cut(s) 12
RsaNI GTAC 1 cut(s) 11
RseI CAYNNNNRTG 1 cut(s) 345
SacI GAGCTC 1 cut(s) 230
SaqAI TTAA 2 cut(s) 189, 255
Sau3AI GATC 2 cut(s) 292, 605
Sau96I GGNCC 1 cut(s) 260
ScaI AGTACT 1 cut(s) 12
ScrFI CCNGG 1 cut(s) 241
SduI GDGCHC 4 cut(s) 207, 230, 250, 272
SetI ASST 8 cut(s) 42, 109, 140, 230, 368, 427, 502, 587
SmiMI CAYNNNNRTG 1 cut(s) 345
SmlI CTYRAG 1 cut(s) 200
SmoI CTYRAG 1 cut(s) 200
Sse9I AATT 2 cut(s) 67, 220
SsiI CCGC 2 cut(s) 451, 550
SspMI CTAG 1 cut(s) 104
SstI GAGCTC 1 cut(s) 230
StyD4I CCNGG 1 cut(s) 239
TaiI ACGT 1 cut(s) 42
TaqI TCGA 4 cut(s) 18, 224, 234, 494
TasI AATT 2 cut(s) 67, 220
TatI WGTACW 1 cut(s) 10
Tru1I TTAA 2 cut(s) 189, 255
Tru9I TTAA 2 cut(s) 189, 255
XceI RCATGY 1 cut(s) 344
XmiI GTMKAC 1 cut(s) 48
XspI CTAG 1 cut(s) 104
ZrmI AGTACT 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.