AT2G13100

glycerol-3-phosphate transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0001726
Physical Location & Seq
Forward (+)
5389594 .. 5392151
2558 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G13100.1

Sequence Viewer

Length: 1482 bp
ATGCAATCGAGAATCGTCGGATTAGCTCCGGCGTTTTCTCTCTTCCCTAACCTAAACACACCTCACAAAACCTTCACTTTCCATCAAATCTTAGTTCTCATCATCACATTCACAGCCTACGCTTCCTTTCACGCTTCTCGTAAACCACCAAGTATCGTCAAAAGCGTCCTTGGTCCACCTTCTCTTAATTCATCTTCAATTGATAATGGCTGGGCTCCGTTTAACGGAACCCAAGGAACCAAGAGACTTGGTGAGCTTGATTTGGCTTTTCTTTCTTCTTATGCTTTGGGTATGTATTTTGCTGGACATTTAGGAGATAGGATTGATTTGAGATACTTTCTTGTGTTTGGAATGATGGGTAGTGGGATTCTTACTCTTGTGTTTGGTTTAGGGTATTGGATGAATGTTCATACACTTGGGTTTTATATGAGTGTTCAGATTGTTTGTGGTTTGTTTCAATCTATTGGATGGCCTTGTGTTGTTTCTGTTGTTGGTAATTGGTGTGGGAAAGAGAAACGTGGTTTGATTATGGGTTTGTGGAACTCTCATACTTCTGTTGGGAATATTCTCGGTTCGGTTATTGCGTCTTCGGTTCTTGATTTCGGTTGGGGTTGGTCTTTTGTTTTGCCTGGTGTGTTGGTGCTTGTGTCTGGAGTGGTTGTGTTTATGTTTCTTGTTGTTAGTCCTAATGATTTGGGGTTTGAAGAATTGGGTAAAGAGATTGAGATTGAGATGAGTTTAGGTGAGAATGTAGAGGAAAGTTTGAGGAAACATGAAGCTGAGGGCGCGGTGCTACTTGAAAACGTAGATGATTCGTCGTTTGCTATCGGGTTTCTCGAGGCTTGGAGATTGCCTGGTGTTGCGCCTTACGCTTTCTGTTTGTTTTTCTCGAAACTCGTCGCTTACACGTTCTTGTATTGGTTACCATACTACTTAAGGCACACAGCTGTTGCGGGTGTGAATCTCTCCCATAAAACCGCTGGGATTCTCTCGACGGTCTTTGACGTTGGAGGAGTTCTTGGTGGAATATCAGCAGGGTTCATTTCCGATAAAATTAAAGCGCGTGCGCTCACGTCAATCACATTCTTGGCACTCTCTATTCCTGCTTTAATTATGTACAGAGTCTATGGAAGTGTGTCCATGTTCATCAACATCGTCTTGATGTTTATATCCGGGTTATTAGTAAACGGTCCTTATGCACTAATAACCACAGCTGTTGCAGCTGATCTCGGAACACAAGACTCTATAAAAGGGAATGGTCGAGCTTTGGCGACAGTAACTGCTATTATAGACGGTACTGGTTCGGTTGGCGCAGCTTTGGGTCCGTTGCTTGCTGGTTACATATCGAGCAGAGGGTGGAACAGTGTTTTTTTCATGCTTATTGTTTCAATATTCTTTGCGGGTTTGTTCTTGGTTCGGCTTGCAAAGTCTGAGATCAATACGATGAGGTCCGGAGAATTGATAGCGTCGAGTGTTCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0042592 GO:0048878 GO:0050801 GO:0055062 GO:0055081 GO:0055083 GO:0065007 GO:0065008 GO:0072505 GO:0072506 GO:0098771
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MFS_1

Protein Analysis

493

Amino Acids

53.06

Weight (kDa)

7.12

Isoelectric Point (pI)

35.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 86 - 408 4.3e-36 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 788, 1063
AccIII TCCGGA 1 cut(s) 1451
AciI CCGC 4 cut(s) 788, 953, 978, 1400
AfaI GTAC 2 cut(s) 1118, 1297
AfiI CCNNNNNNNGG 1 cut(s) 224
AflII CTTAAG 1 cut(s) 934
AflIII ACRYGT 1 cut(s) 906
AgsI TTSAA 5 cut(s) 198, 458, 704, 800, 1389
AjiI CACGTC 1 cut(s) 1074
AjnI CCWGG 2 cut(s) 628, 853
AluBI AGCT 8 cut(s) 26, 256, 779, 947, 1214, 1223, 1265, 1316
AluI AGCT 8 cut(s) 26, 256, 779, 947, 1214, 1223, 1265, 1316
Alw26I GTCTC 1 cut(s) 238
AlwNI CAGNNNCTG 1 cut(s) 1280
Ama87I CYCGRG 1 cut(s) 836
Aor13HI TCCGGA 1 cut(s) 1451
AoxI GGCC 1 cut(s) 470
ApeKI GCWGC 2 cut(s) 1220, 1313
AspLEI GCGC 5 cut(s) 788, 865, 1063, 1069, 1313
AspS9I GGNCC 4 cut(s) 173, 1190, 1322, 1449
AsuC2I CCSGG 1 cut(s) 1174
AsuHPI GGTGA 2 cut(s) 263, 755
AvaI CYCGRG 1 cut(s) 836
AvaII GGWCC 4 cut(s) 173, 1190, 1322, 1449
BanII GRGCYC 1 cut(s) 217
BbsI GAAGAC 1 cut(s) 579
BbvCI CCTCAGC 1 cut(s) 780
BbvI GCAGC 2 cut(s) 1232, 1325
BccI CCATC 3 cut(s) 90, 349, 462
BciT130I CCWGG 2 cut(s) 630, 855
BcnI CCSGG 1 cut(s) 1174
BcoDI GTCTC 1 cut(s) 238
BfrI CTTAAG 1 cut(s) 934
BisI GCNGC 2 cut(s) 1221, 1314
BlsI GCNGC 2 cut(s) 1222, 1315
Bme1390I CCNGG 3 cut(s) 630, 855, 1174
Bme18I GGWCC 4 cut(s) 173, 1190, 1322, 1449
BmeT110I CYCGRG 1 cut(s) 836
BmgBI CACGTC 1 cut(s) 1074
BmgT120I GGNCC 4 cut(s) 173, 1190, 1322, 1449
BmiI GGNNCC 4 cut(s) 216, 229, 238, 1323
BmrFI CCNGG 3 cut(s) 630, 855, 1174
BpiI GAAGAC 1 cut(s) 579
BpmI CTGGAG 1 cut(s) 672
Bpu10I CCTNAGC 1 cut(s) 780
BpuMI CCSGG 1 cut(s) 1174
BsaJI CCNNGG 2 cut(s) 169, 232
BsaWI WCCGGW 1 cut(s) 1451
BsaXI ACNNNNNCTCC 2 cut(s) 645, 675
Bsc4I CCNNNNNNNGG 1 cut(s) 224
Bse1I ACTGG 1 cut(s) 1303
BseAI TCCGGA 1 cut(s) 1451
BseBI CCWGG 2 cut(s) 630, 855
BseDI CCNNGG 2 cut(s) 169, 232
BseGI GGATG 2 cut(s) 405, 473
BseLI CCNNNNNNNGG 1 cut(s) 224
BseMII CTCAG 2 cut(s) 771, 1422
BseNI ACTGG 1 cut(s) 1303
BseRI GAGGAG 1 cut(s) 1026
BseXI GCAGC 2 cut(s) 1232, 1325
BseYI CCCAGC 2 cut(s) 210, 980
Bsh1236I CGCG 2 cut(s) 788, 1063
BshFI GGCC 1 cut(s) 472
BsiHKCI CYCGRG 1 cut(s) 836
BsiSI CCGG 3 cut(s) 29, 1173, 1452
BslI CCNNNNNNNGG 1 cut(s) 224
BsmAI GTCTC 1 cut(s) 238
BsnI GGCC 1 cut(s) 472
BsoBI CYCGRG 1 cut(s) 836
Bsp1286I GDGCHC 1 cut(s) 217
Bsp13I TCCGGA 1 cut(s) 1451
Bsp1407I TGTACA 1 cut(s) 1116
Bsp143I GATC 2 cut(s) 1225, 1434
BspACI CCGC 4 cut(s) 788, 953, 978, 1400
BspANI GGCC 1 cut(s) 472
BspCNI CTCAG 2 cut(s) 772, 1423
BspEI TCCGGA 1 cut(s) 1451
BspFNI CGCG 2 cut(s) 788, 1063
BspLI GGNNCC 4 cut(s) 216, 229, 238, 1323
BspTI CTTAAG 1 cut(s) 934
BsrGI TGTACA 1 cut(s) 1116
BsrI ACTGG 1 cut(s) 1303
BssECI CCNNGG 2 cut(s) 169, 232
BssMI GATC 2 cut(s) 1225, 1434
BssT1I CCWWGG 2 cut(s) 169, 232
Bst2UI CCWGG 2 cut(s) 630, 855
Bst4CI ACNGT 5 cut(s) 997, 1190, 1276, 1295, 1364
Bst6I CTCTTC 1 cut(s) 47
BstAFI CTTAAG 1 cut(s) 934
BstAUI TGTACA 1 cut(s) 1116
BstC8I GCNNGC 3 cut(s) 1065, 1332, 1422
BstDEI CTNAG 3 cut(s) 91, 780, 1431
BstEII GGTNACC 1 cut(s) 921
BstF5I GGATG 2 cut(s) 405, 473
BstFNI CGCG 2 cut(s) 788, 1063
BstHHI GCGC 5 cut(s) 788, 865, 1063, 1069, 1313
BstKTI GATC 2 cut(s) 1228, 1437
BstMAI GTCTC 1 cut(s) 238
BstMBI GATC 2 cut(s) 1225, 1434
BstMWI GCNNNNNNNGC 3 cut(s) 785, 869, 1220
BstNI CCWGG 2 cut(s) 630, 855
BstPI GGTNACC 1 cut(s) 921
BstSCI CCNGG 3 cut(s) 628, 853, 1172
BstUI CGCG 2 cut(s) 788, 1063
BstV1I GCAGC 2 cut(s) 1232, 1325
BstV2I GAAGAC 1 cut(s) 579
BsuRI GGCC 1 cut(s) 472
BtrI CACGTC 1 cut(s) 1074
BtsCI GGATG 2 cut(s) 405, 473
BtsIMutI CAGTG 1 cut(s) 1369
Cac8I GCNNGC 3 cut(s) 1065, 1332, 1422
CaiI CAGNNNCTG 1 cut(s) 1280
CfoI GCGC 5 cut(s) 788, 865, 1063, 1069, 1313
Cfr13I GGNCC 4 cut(s) 173, 1190, 1322, 1449
CseI GACGC 3 cut(s) 154, 573, 1455
Csp6I GTAC 2 cut(s) 1117, 1296
CspCI CAANNNNNGTGG 2 cut(s) 1198, 1233
CviAII CATG 3 cut(s) 773, 1141, 1375
CviQI GTAC 2 cut(s) 1117, 1296
DdeI CTNAG 3 cut(s) 91, 780, 1431
DpnI GATC 2 cut(s) 1227, 1436
DpnII GATC 2 cut(s) 1225, 1434
Eam1104I CTCTTC 1 cut(s) 47
EarI CTCTTC 1 cut(s) 47
Eco130I CCWWGG 2 cut(s) 169, 232
Eco24I GRGCYC 1 cut(s) 217
Eco47I GGWCC 4 cut(s) 173, 1190, 1322, 1449
Eco88I CYCGRG 1 cut(s) 836
Eco91I GGTNACC 1 cut(s) 921
EcoO65I GGTNACC 1 cut(s) 921
EcoRII CCWGG 2 cut(s) 628, 853
EcoT14I CCWWGG 2 cut(s) 169, 232
EcoT38I GRGCYC 1 cut(s) 217
ErhI CCWWGG 2 cut(s) 169, 232
FaeI CATG 3 cut(s) 776, 1144, 1378
FatI CATG 3 cut(s) 772, 1140, 1374
FauI CCCGC 2 cut(s) 946, 1393
Fnu4HI GCNGC 2 cut(s) 1221, 1314
FokI GGATG 2 cut(s) 412, 480
FriOI GRGCYC 1 cut(s) 217
Fsp4HI GCNGC 2 cut(s) 1221, 1314
GlaI GCGC 5 cut(s) 787, 864, 1062, 1068, 1312
GluI GCNGC 2 cut(s) 1221, 1314
GsaI CCCAGC 2 cut(s) 214, 984
GsuI CTGGAG 1 cut(s) 672
HaeIII GGCC 1 cut(s) 472
HapII CCGG 3 cut(s) 29, 1173, 1452
HgaI GACGC 3 cut(s) 154, 573, 1455
HhaI GCGC 5 cut(s) 788, 865, 1063, 1069, 1313
Hin1II CATG 3 cut(s) 776, 1144, 1378
Hin6I GCGC 5 cut(s) 786, 863, 1061, 1067, 1311
HinP1I GCGC 5 cut(s) 786, 863, 1061, 1067, 1311
HinfI GANTC 7 cut(s) 12, 367, 812, 961, 985, 1122, 1241
HpaII CCGG 3 cut(s) 29, 1173, 1452
HphI GGTGA 2 cut(s) 263, 755
Hpy166II GTNNAC 3 cut(s) 143, 176, 1186
Hpy188I TCNGA 5 cut(s) 20, 438, 1048, 1232, 1432
Hpy188III TCNNGA 8 cut(s) 9, 596, 651, 836, 889, 991, 1159, 1452
Hpy8I GTNNAC 3 cut(s) 143, 176, 1186
Hpy99I CGWCG 5 cut(s) 20, 820, 902, 997, 1471
HpyAV CCTTC 2 cut(s) 82, 189
HpyCH4III ACNGT 5 cut(s) 997, 1190, 1276, 1295, 1364
HpyCH4IV ACGT 5 cut(s) 517, 804, 908, 1005, 1073
HpyCH4V TGCA 4 cut(s) 4, 1199, 1220, 1424
HpyF10VI GCNNNNNNNGC 3 cut(s) 785, 869, 1220
HpyF3I CTNAG 3 cut(s) 91, 780, 1431
HpySE526I ACGT 5 cut(s) 517, 804, 908, 1005, 1073
Hsp92II CATG 3 cut(s) 776, 1144, 1378
HspAI GCGC 5 cut(s) 786, 863, 1061, 1067, 1311
Kpn2I TCCGGA 1 cut(s) 1451
Kzo9I GATC 2 cut(s) 1225, 1434
LmnI GCTCC 2 cut(s) 31, 220
Lsp1109I GCAGC 2 cut(s) 1232, 1325
MaeII ACGT 5 cut(s) 517, 804, 908, 1005, 1073
MaeIII GTNAC 3 cut(s) 921, 1276, 1337
MalI GATC 2 cut(s) 1227, 1436
MboI GATC 2 cut(s) 1225, 1434
MboII GAAGA 5 cut(s) 34, 186, 267, 579, 716
MfeI CAATTG 1 cut(s) 198
MhlI GDGCHC 1 cut(s) 217
MluCI AATT 7 cut(s) 187, 198, 496, 707, 1053, 1110, 1457
MlyI GAGTC 2 cut(s) 1131, 1235
MmeI TCCRAC 1 cut(s) 988
MnlI CCTC 8 cut(s) 72, 748, 759, 775, 832, 1004, 1346, 1440
MroI TCCGGA 1 cut(s) 1451
MseI TTAA 6 cut(s) 186, 222, 935, 1056, 1109, 1480
MspA1I CMGCKG 4 cut(s) 947, 980, 1214, 1223
MspCI CTTAAG 1 cut(s) 934
MspI CCGG 3 cut(s) 29, 1173, 1452
MspR9I CCNGG 3 cut(s) 630, 855, 1174
MunI CAATTG 1 cut(s) 198
MvaI CCWGG 2 cut(s) 630, 855
MvnI CGCG 2 cut(s) 788, 1063
MwoI GCNNNNNNNGC 3 cut(s) 785, 869, 1220
NciI CCSGG 1 cut(s) 1174
NdeII GATC 2 cut(s) 1225, 1434
NlaIII CATG 3 cut(s) 776, 1144, 1378
NlaIV GGNNCC 4 cut(s) 216, 229, 238, 1323
PaeR7I CTCGAG 1 cut(s) 836
PcsI WCGNNNNNNNCGW 3 cut(s) 162, 581, 834
PfeI GAWTC 5 cut(s) 12, 367, 812, 961, 985
PkrI GCNGC 2 cut(s) 1222, 1315
PleI GAGTC 2 cut(s) 1130, 1235
PpsI GAGTC 2 cut(s) 1130, 1235
Psp6I CCWGG 2 cut(s) 628, 853
PspEI GGTNACC 1 cut(s) 921
PspFI CCCAGC 2 cut(s) 210, 980
PspGI CCWGG 2 cut(s) 628, 853
PspN4I GGNNCC 4 cut(s) 216, 229, 238, 1323
PspPI GGNCC 4 cut(s) 173, 1190, 1322, 1449
PstNI CAGNNNCTG 1 cut(s) 1280
PvuII CAGCTG 3 cut(s) 947, 1214, 1223
RsaI GTAC 2 cut(s) 1118, 1297
RsaNI GTAC 2 cut(s) 1117, 1296
SaqAI TTAA 6 cut(s) 186, 222, 935, 1056, 1109, 1480
SatI GCNGC 2 cut(s) 1221, 1314
Sau3AI GATC 2 cut(s) 1225, 1434
Sau96I GGNCC 4 cut(s) 173, 1190, 1322, 1449
SchI GAGTC 2 cut(s) 1131, 1235
ScrFI CCNGG 3 cut(s) 630, 855, 1174
SduI GDGCHC 1 cut(s) 217
Sfr274I CTCGAG 1 cut(s) 836
SinI GGWCC 4 cut(s) 173, 1190, 1322, 1449
SlaI CTCGAG 1 cut(s) 836
SmlI CTYRAG 2 cut(s) 836, 934
SmoI CTYRAG 2 cut(s) 836, 934
Sse9I AATT 7 cut(s) 187, 198, 496, 707, 1053, 1110, 1457
SsiI CCGC 4 cut(s) 788, 953, 978, 1400
SspI AATATT 2 cut(s) 565, 1392
StyD4I CCNGG 3 cut(s) 628, 853, 1172
StyI CCWWGG 2 cut(s) 169, 232
TaaI ACNGT 5 cut(s) 997, 1190, 1276, 1295, 1364
TaiI ACGT 5 cut(s) 520, 807, 911, 1008, 1076
TaqI TCGA 7 cut(s) 8, 837, 890, 992, 1261, 1346, 1469
TasI AATT 7 cut(s) 187, 198, 496, 707, 1053, 1110, 1457
TatI WGTACW 1 cut(s) 1116
TfiI GAWTC 5 cut(s) 12, 367, 812, 961, 985
Tru1I TTAA 6 cut(s) 186, 222, 935, 1056, 1109, 1480
Tru9I TTAA 6 cut(s) 186, 222, 935, 1056, 1109, 1480
TscAI CASTG 1 cut(s) 1369
TseI GCWGC 2 cut(s) 1220, 1313
TspDTI ATGAA 7 cut(s) 180, 398, 416, 789, 1030, 1135, 1363
TspGWI ACGGA 3 cut(s) 207, 240, 1314
TspRI CASTG 1 cut(s) 1369
Vha464I CTTAAG 1 cut(s) 934
VpaK11BI GGWCC 4 cut(s) 173, 1190, 1322, 1449
XcmI CCANNNNNNNNNTGG 1 cut(s) 977
XhoI CTCGAG 1 cut(s) 836
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.