Rorug05G0053100

chromatin organization

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0001726
Physical Location & Seq
Forward (+)
4607994 .. 4608848
855 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0053100.1

Sequence Viewer

Length: 504 bp
ATGGCAGACCAGGGTGAAGGTGATCGGGTGAGCTTTTCTGATATGAGAGACTTCGTCATAGAGATTGAGGCAAAGTGTCGAACCTTGTGGCAAGAAGAGAACGATGCTGCTAATGAATCCGAATCCAAGGGTTCATCTTTGAGACAAGGCGCCCCTTCGGATAGTTATGCAGACAGGGCATTTGCTAATGAGATAAACATTGCTGTGAACAAGACCAGGCAAAGCAGATTTGGACAAGCCATCAATTCTGGCTTTCATGGCCTTCAATGTGCCAGGGATTGGTACACTAGGGAATGTGGTTCCACGGGCATGAACCATGATCTGGTGCGGCATTTCATAGATGTGCAGACGCGCCTTATTGCTCCGATCTGTCCACACTATGCTGAATATGTTTGGAAGCTGCTTTTGAAGAAGGAAGGGTTTGTGGTTAGTGCAGGGTGGCTTGCGGCGGATGCTCCAGAAGATTCAGCCCTCCAGATTAGCCAGTGTTACTCACAAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000070 GO:0000118 GO:0000122 GO:0000151 GO:0000228 GO:0000278 GO:0000280 GO:0000281 GO:0000775 GO:0000776 GO:0000777 GO:0000778 GO:0000779 GO:0000780 GO:0000785 GO:0000790 GO:0000793 GO:0000794 GO:0000819 GO:0000910 GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001067 GO:0001558 GO:0001708 GO:0002064 GO:0002065 GO:0002066 GO:0002244 GO:0002376 GO:0002520 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003723 GO:0003824 GO:0004407 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005677 GO:0005694 GO:0005700 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006277 GO:0006281 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006335 GO:0006336 GO:0006338 GO:0006342 GO:0006349 GO:0006351 GO:0006355 GO:0006357 GO:0006464 GO:0006473 GO:0006475 GO:0006476 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007076 GO:0007275 GO:0007276 GO:0007281 GO:0007292 GO:0007304 GO:0007306 GO:0007307 GO:0007346 GO:0007379 GO:0007389 GO:0007548 GO:0008150 GO:0008152 GO:0008213 GO:0008283 GO:0008284 GO:0008285 GO:0008406 GO:0009058 GO:0009059 GO:0009266 GO:0009408 GO:0009507 GO:0009536 GO:0009555 GO:0009611 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009790 GO:0009791 GO:0009792 GO:0009793 GO:0009887 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009987 GO:0010026 GO:0010033 GO:0010035 GO:0010038 GO:0010154 GO:0010214 GO:0010286 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010629 GO:0010927 GO:0010948 GO:0014070 GO:0016043 GO:0016070 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016573 GO:0016575 GO:0016580 GO:0016581 GO:0016584 GO:0016589 GO:0016787 GO:0016810 GO:0016811 GO:0017053 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019213 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0019899 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0022607 GO:0030097 GO:0030154 GO:0030261 GO:0030308 GO:0030703 GO:0030707 GO:0030855 GO:0031010 GO:0031055 GO:0031099 GO:0031101 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031461 GO:0031497 GO:0031507 GO:0031519 GO:0031523 GO:0031974 GO:0031981 GO:0032221 GO:0032259 GO:0032501 GO:0032502 GO:0032504 GO:0032774 GO:0032989 GO:0032991 GO:0033186 GO:0033554 GO:0033558 GO:0033698 GO:0033993 GO:0034080 GO:0034508 GO:0034605 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0034708 GO:0034723 GO:0034724 GO:0034728 GO:0035035 GO:0035097 GO:0035098 GO:0035239 GO:0035282 GO:0035295 GO:0035601 GO:0036211 GO:0040007 GO:0040008 GO:0040029 GO:0040035 GO:0042060 GO:0042127 GO:0042221 GO:0042246 GO:0042393 GO:0042766 GO:0042802 GO:0042803 GO:0042826 GO:0043044 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043486 GO:0043543 GO:0043565 GO:0043687 GO:0043933 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044703 GO:0045137 GO:0045138 GO:0045165 GO:0045786 GO:0045787 GO:0045814 GO:0045892 GO:0045926 GO:0045934 GO:0046483 GO:0046661 GO:0046689 GO:0046983 GO:0048229 GO:0048285 GO:0048316 GO:0048366 GO:0048367 GO:0048468 GO:0048477 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048534 GO:0048545 GO:0048546 GO:0048557 GO:0048562 GO:0048565 GO:0048566 GO:0048568 GO:0048580 GO:0048589 GO:0048598 GO:0048608 GO:0048609 GO:0048646 GO:0048731 GO:0048806 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051276 GO:0051301 GO:0051382 GO:0051383 GO:0051704 GO:0051716 GO:0051726 GO:0055123 GO:0060255 GO:0060429 GO:0061458 GO:0061640 GO:0061641 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070176 GO:0070210 GO:0070316 GO:0070317 GO:0070370 GO:0070603 GO:0070822 GO:0070828 GO:0070925 GO:0071103 GO:0071514 GO:0071704 GO:0071824 GO:0071840 GO:0071897 GO:0080008 GO:0080090 GO:0090304 GO:0090545 GO:0090558 GO:0090568 GO:0090571 GO:0090598 GO:0097159 GO:0097659 GO:0098654 GO:0098687 GO:0098732 GO:0098813 GO:0099402 GO:0140014 GO:0140096 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1902494 GO:1902679 GO:1903047 GO:1903506 GO:1903507 GO:1904949 GO:1990234 GO:1990483 GO:1990837 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000653 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04218 map04218
Pfam Domains
Protein Families
CAF1C_H4-bd WD40

Protein Analysis

167

Amino Acids

18.74

Weight (kDa)

5.21

Isoelectric Point (pI)

56.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Anticodon_1 PF08264 71 - 152 1.5e-09 Anticodon-binding domain of tRNA ligase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 149
AccB7I CCANNNNNTGG 2 cut(s) 279, 322
AccII CGCG 1 cut(s) 352
AciI CCGC 3 cut(s) 328, 446, 449
AcyI GRCGYC 1 cut(s) 150
AfaI GTAC 1 cut(s) 284
AfiI CCNNNNNNNGG 2 cut(s) 279, 322
AgsI TTSAA 2 cut(s) 266, 409
AjnI CCWGG 3 cut(s) 9, 215, 272
AluBI AGCT 2 cut(s) 33, 400
AluI AGCT 2 cut(s) 33, 400
Alw26I GTCTC 2 cut(s) 42, 136
AoxI GGCC 1 cut(s) 259
ApeKI GCWGC 2 cut(s) 107, 400
ArsI GACNNNNNNTTYG 2 cut(s) 164, 196
AspLEI GCGC 2 cut(s) 152, 354
AsuHPI GGTGA 3 cut(s) 26, 32, 40
BanI GGYRCC 1 cut(s) 149
BbvI GCAGC 2 cut(s) 94, 387
BccI CCATC 1 cut(s) 248
BciT130I CCWGG 3 cut(s) 11, 217, 274
BcoDI GTCTC 2 cut(s) 42, 136
BfaI CTAG 1 cut(s) 288
BfoI RGCGCY 1 cut(s) 153
BisI GCNGC 4 cut(s) 108, 329, 401, 447
BlsI GCNGC 4 cut(s) 109, 330, 402, 448
Bme1390I CCNGG 3 cut(s) 11, 217, 274
BmiI GGNNCC 2 cut(s) 151, 301
BmrFI CCNGG 3 cut(s) 11, 217, 274
BmsI GCATC 2 cut(s) 94, 442
BpmI CTGGAG 2 cut(s) 441, 458
BsaHI GRCGYC 1 cut(s) 150
BsaJI CCNNGG 4 cut(s) 10, 126, 273, 303
Bsc4I CCNNNNNNNGG 2 cut(s) 279, 322
Bse1I ACTGG 1 cut(s) 484
Bse3DI GCAATG 1 cut(s) 198
BseBI CCWGG 3 cut(s) 11, 217, 274
BseDI CCNNGG 4 cut(s) 10, 126, 273, 303
BseGI GGATG 1 cut(s) 457
BseLI CCNNNNNNNGG 2 cut(s) 279, 322
BseMI GCAATG 1 cut(s) 198
BseNI ACTGG 1 cut(s) 484
BseXI GCAGC 2 cut(s) 94, 387
BsgI GTGCAG 2 cut(s) 365, 453
Bsh1236I CGCG 1 cut(s) 352
BshFI GGCC 1 cut(s) 261
BshNI GGYRCC 1 cut(s) 149
BslI CCNNNNNNNGG 2 cut(s) 279, 322
BsmAI GTCTC 2 cut(s) 42, 136
BsnI GGCC 1 cut(s) 261
Bsp143I GATC 3 cut(s) 22, 319, 366
BspACI CCGC 3 cut(s) 328, 446, 449
BspANI GGCC 1 cut(s) 261
BspFNI CGCG 1 cut(s) 352
BspLI GGNNCC 2 cut(s) 151, 301
BspT107I GGYRCC 1 cut(s) 149
BsrDI GCAATG 1 cut(s) 198
BsrI ACTGG 1 cut(s) 484
BssECI CCNNGG 4 cut(s) 10, 126, 273, 303
BssMI GATC 3 cut(s) 22, 319, 366
BssNI GRCGYC 1 cut(s) 150
BssT1I CCWWGG 1 cut(s) 126
Bst2UI CCWGG 3 cut(s) 11, 217, 274
Bst6I CTCTTC 1 cut(s) 90
BstACI GRCGYC 1 cut(s) 150
BstC8I GCNNGC 1 cut(s) 444
BstDSI CCRYGG 1 cut(s) 303
BstF5I GGATG 1 cut(s) 457
BstFNI CGCG 1 cut(s) 352
BstH2I RGCGCY 1 cut(s) 153
BstHHI GCGC 2 cut(s) 152, 354
BstKTI GATC 3 cut(s) 25, 322, 369
BstMAI GTCTC 2 cut(s) 42, 136
BstMBI GATC 3 cut(s) 22, 319, 366
BstMWI GCNNNNNNNGC 3 cut(s) 176, 258, 452
BstNI CCWGG 3 cut(s) 11, 217, 274
BstSCI CCNGG 3 cut(s) 9, 215, 272
BstUI CGCG 1 cut(s) 352
BstV1I GCAGC 2 cut(s) 94, 387
BsuRI GGCC 1 cut(s) 261
BtgI CCRYGG 1 cut(s) 303
BtsCI GGATG 1 cut(s) 457
BtsIMutI CAGTG 1 cut(s) 491
Cac8I GCNNGC 1 cut(s) 444
CfoI GCGC 2 cut(s) 152, 354
CseI GACGC 1 cut(s) 358
Csp6I GTAC 1 cut(s) 283
CviAII CATG 3 cut(s) 257, 310, 317
CviJI RGCY 8 cut(s) 33, 239, 252, 261, 400, 442, 470, 483
CviKI_1 RGCY 8 cut(s) 33, 239, 252, 261, 400, 442, 470, 483
CviQI GTAC 1 cut(s) 283
DinI GGCGCC 1 cut(s) 151
DpnI GATC 3 cut(s) 24, 321, 368
DpnII GATC 3 cut(s) 22, 319, 366
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
EciI GGCGGA 1 cut(s) 464
Eco130I CCWWGG 1 cut(s) 126
EcoRII CCWGG 3 cut(s) 9, 215, 272
EcoT14I CCWWGG 1 cut(s) 126
EgeI GGCGCC 1 cut(s) 151
EheI GGCGCC 1 cut(s) 151
ErhI CCWWGG 1 cut(s) 126
FaeI CATG 3 cut(s) 260, 313, 320
FaiI YATR 9 cut(s) 44, 59, 168, 258, 311, 318, 338, 381, 390
FatI CATG 3 cut(s) 256, 309, 316
Fnu4HI GCNGC 4 cut(s) 108, 329, 401, 447
FokI GGATG 1 cut(s) 464
Fsp4HI GCNGC 4 cut(s) 108, 329, 401, 447
FspBI CTAG 1 cut(s) 288
GlaI GCGC 2 cut(s) 151, 353
GluI GCNGC 4 cut(s) 108, 329, 401, 447
GsuI CTGGAG 2 cut(s) 441, 458
HaeII RGCGCY 1 cut(s) 153
HaeIII GGCC 1 cut(s) 261
HgaI GACGC 1 cut(s) 358
HhaI GCGC 2 cut(s) 152, 354
Hin1I GRCGYC 1 cut(s) 150
Hin1II CATG 3 cut(s) 260, 313, 320
Hin6I GCGC 2 cut(s) 150, 352
HinP1I GCGC 2 cut(s) 150, 352
HinfI GANTC 3 cut(s) 116, 122, 464
HphI GGTGA 3 cut(s) 26, 32, 40
Hpy166II GTNNAC 3 cut(s) 208, 285, 374
Hpy188I TCNGA 4 cut(s) 40, 121, 160, 366
Hpy188III TCNNGA 2 cut(s) 458, 475
Hpy8I GTNNAC 3 cut(s) 208, 285, 374
HpyAV CCTTC 5 cut(s) 11, 165, 272, 406, 410
HpyCH4V TGCA 3 cut(s) 170, 346, 434
HpyF10VI GCNNNNNNNGC 3 cut(s) 176, 258, 452
Hsp92I GRCGYC 1 cut(s) 150
Hsp92II CATG 3 cut(s) 260, 313, 320
HspAI GCGC 2 cut(s) 150, 352
KasI GGCGCC 1 cut(s) 149
Kzo9I GATC 3 cut(s) 22, 319, 366
LmnI GCTCC 2 cut(s) 367, 460
Lsp1109I GCAGC 2 cut(s) 94, 387
LweI GCATC 2 cut(s) 94, 442
MaeI CTAG 1 cut(s) 288
MaeIII GTNAC 1 cut(s) 488
MalI GATC 3 cut(s) 24, 321, 368
MboI GATC 3 cut(s) 22, 319, 366
MboII GAAGA 3 cut(s) 107, 421, 473
MluCI AATT 1 cut(s) 244
Mly113I GGCGCC 1 cut(s) 150
MnlI CCTC 2 cut(s) 61, 482
MslI CAYNNNNRTG 3 cut(s) 203, 308, 341
MspR9I CCNGG 3 cut(s) 11, 217, 274
MvaI CCWGG 3 cut(s) 11, 217, 274
MvnI CGCG 1 cut(s) 352
MwoI GCNNNNNNNGC 3 cut(s) 176, 258, 452
NarI GGCGCC 1 cut(s) 150
NdeII GATC 3 cut(s) 22, 319, 366
NlaIII CATG 3 cut(s) 260, 313, 320
NlaIV GGNNCC 2 cut(s) 151, 301
PfeI GAWTC 3 cut(s) 116, 122, 464
PflFI GACNNNGTC 1 cut(s) 53
PflMI CCANNNNNTGG 2 cut(s) 279, 322
PkrI GCNGC 4 cut(s) 109, 330, 402, 448
PluTI GGCGCC 1 cut(s) 153
Psp6I CCWGG 3 cut(s) 9, 215, 272
PspGI CCWGG 3 cut(s) 9, 215, 272
PspN4I GGNNCC 2 cut(s) 151, 301
PsyI GACNNNGTC 1 cut(s) 53
RsaI GTAC 1 cut(s) 284
RsaNI GTAC 1 cut(s) 283
RseI CAYNNNNRTG 3 cut(s) 203, 308, 341
SatI GCNGC 4 cut(s) 108, 329, 401, 447
Sau3AI GATC 3 cut(s) 22, 319, 366
ScrFI CCNGG 3 cut(s) 11, 217, 274
SetI ASST 4 cut(s) 22, 35, 86, 402
SfaNI GCATC 2 cut(s) 94, 442
SfoI GGCGCC 1 cut(s) 151
SmiMI CAYNNNNRTG 3 cut(s) 203, 308, 341
Sse9I AATT 1 cut(s) 244
SsiI CCGC 3 cut(s) 328, 446, 449
SspDI GGCGCC 1 cut(s) 149
SspMI CTAG 1 cut(s) 288
StyD4I CCNGG 3 cut(s) 9, 215, 272
StyI CCWWGG 1 cut(s) 126
TaqI TCGA 1 cut(s) 79
TasI AATT 1 cut(s) 244
TauI GCSGC 2 cut(s) 331, 449
TfiI GAWTC 3 cut(s) 116, 122, 464
TscAI CASTG 1 cut(s) 491
TseI GCWGC 2 cut(s) 107, 400
TspDTI ATGAA 5 cut(s) 123, 129, 245, 325, 326
TspRI CASTG 1 cut(s) 491
Tth111I GACNNNGTC 1 cut(s) 53
Van91I CCANNNNNTGG 2 cut(s) 279, 322
XspI CTAG 1 cut(s) 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.