Rh2CG022600

glycerol-3-phosphate transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0001726
Physical Location & Seq
Forward (+)
1739780 .. 1740220
441 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG022600.1

Sequence Viewer

Length: 441 bp
ATGCTTGAAGCTCGGGCTGTTACATCGATTGCATTTTTGTTACTTTCAGTTCCAGCCCTTGTTCTCTACCGGGCTTATGGAAGCTTATCTATGGTTGCCAACATTCTTCTGATGTTTCTTTCCGGACTGCTGGTGAATGGTCCATATGCGCTCATCACAACAGCTGTTGCTGCTGATCTTGGTACTCAGACCTTAATCAGAGGCAACTCTCGTGCCTTGGCTACTGTAACCGCAATTATAGATGGTACGGGGTCAGTTGGGGCAGCTCTTGGTCCACTTTTGGCTGGCTATATTTCGACCAGGGGATGGAACAGCGTTTTCTTGATGCTAATTCTTGCTATTTTTTGTGCCATTTTGTTTTTGATACGCATTGCCAGAACTGAGGTTAAAGAGAAGTTGAGTGGGAAAGGATGGTTTTGGTATAGCATAGACACACAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0042592 GO:0048878 GO:0050801 GO:0055062 GO:0055081 GO:0055083 GO:0065007 GO:0065008 GO:0072505 GO:0072506 GO:0098771
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MFS_1

Protein Analysis

146

Amino Acids

15.57

Weight (kDa)

9.58

Isoelectric Point (pI)

12.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 5 - 132 9.1e-07 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 306
AccIII TCCGGA 1 cut(s) 122
AciI CCGC 1 cut(s) 231
AfaI GTAC 2 cut(s) 184, 247
AfiI CCNNNNNNNGG 1 cut(s) 306
AgsI TTSAA 1 cut(s) 8
AjnI CCWGG 1 cut(s) 299
AluBI AGCT 4 cut(s) 11, 84, 164, 266
AluI AGCT 4 cut(s) 11, 84, 164, 266
Ama87I CYCGRG 1 cut(s) 12
Aor13HI TCCGGA 1 cut(s) 122
ApeKI GCWGC 2 cut(s) 170, 263
AspLEI GCGC 1 cut(s) 151
AspS9I GGNCC 2 cut(s) 140, 272
AsuC2I CCSGG 1 cut(s) 71
AsuHPI GGTGA 1 cut(s) 145
AvaI CYCGRG 1 cut(s) 12
AvaII GGWCC 2 cut(s) 140, 272
BauI CACGAG 1 cut(s) 210
BbvI GCAGC 2 cut(s) 157, 275
BccI CCATC 3 cut(s) 236, 300, 405
BciT130I CCWGG 1 cut(s) 301
BcnI CCSGG 1 cut(s) 71
BisI GCNGC 2 cut(s) 171, 264
BlsI GCNGC 2 cut(s) 172, 265
Bme1390I CCNGG 2 cut(s) 71, 301
Bme18I GGWCC 2 cut(s) 140, 272
BmeT110I CYCGRG 1 cut(s) 12
BmgT120I GGNCC 2 cut(s) 140, 272
BmrFI CCNGG 2 cut(s) 71, 301
BmsI GCATC 1 cut(s) 315
BpuMI CCSGG 1 cut(s) 71
Bsa29I ATCGAT 1 cut(s) 26
BsaJI CCNNGG 2 cut(s) 216, 300
BsaWI WCCGGW 1 cut(s) 122
Bsc4I CCNNNNNNNGG 1 cut(s) 306
Bse3DI GCAATG 1 cut(s) 369
BseAI TCCGGA 1 cut(s) 122
BseBI CCWGG 1 cut(s) 301
BseCI ATCGAT 1 cut(s) 26
BseDI CCNNGG 2 cut(s) 216, 300
BseGI GGATG 2 cut(s) 311, 416
BseLI CCNNNNNNNGG 1 cut(s) 306
BseMI GCAATG 1 cut(s) 369
BseMII CTCAG 2 cut(s) 200, 372
BseXI GCAGC 2 cut(s) 157, 275
BshVI ATCGAT 1 cut(s) 26
BsiHKCI CYCGRG 1 cut(s) 12
BsiSI CCGG 2 cut(s) 70, 123
BslI CCNNNNNNNGG 1 cut(s) 306
BsoBI CYCGRG 1 cut(s) 12
Bsp13I TCCGGA 1 cut(s) 122
Bsp143I GATC 1 cut(s) 175
BspACI CCGC 1 cut(s) 231
BspCNI CTCAG 2 cut(s) 199, 373
BspDI ATCGAT 1 cut(s) 26
BspEI TCCGGA 1 cut(s) 122
BsrDI GCAATG 1 cut(s) 369
BssECI CCNNGG 2 cut(s) 216, 300
BssMI GATC 1 cut(s) 175
BssSI CACGAG 1 cut(s) 210
BssT1I CCWWGG 1 cut(s) 216
Bst2BI CACGAG 1 cut(s) 210
Bst2UI CCWGG 1 cut(s) 301
Bst4CI ACNGT 2 cut(s) 226, 438
BstC8I GCNNGC 1 cut(s) 286
BstDEI CTNAG 2 cut(s) 186, 381
BstF5I GGATG 2 cut(s) 311, 416
BstHHI GCGC 1 cut(s) 151
BstKTI GATC 1 cut(s) 178
BstMBI GATC 1 cut(s) 175
BstMWI GCNNNNNNNGC 1 cut(s) 170
BstNI CCWGG 1 cut(s) 301
BstSCI CCNGG 2 cut(s) 69, 299
BstV1I GCAGC 2 cut(s) 157, 275
Bsu15I ATCGAT 1 cut(s) 26
BsuTUI ATCGAT 1 cut(s) 26
BtsCI GGATG 2 cut(s) 311, 416
Cac8I GCNNGC 1 cut(s) 286
CfoI GCGC 1 cut(s) 151
Cfr13I GGNCC 2 cut(s) 140, 272
ClaI ATCGAT 1 cut(s) 26
Csp6I GTAC 2 cut(s) 183, 246
CviQI GTAC 2 cut(s) 183, 246
DdeI CTNAG 2 cut(s) 186, 381
DpnI GATC 1 cut(s) 177
DpnII GATC 1 cut(s) 175
Eco130I CCWWGG 1 cut(s) 216
Eco47I GGWCC 2 cut(s) 140, 272
Eco88I CYCGRG 1 cut(s) 12
EcoRII CCWGG 1 cut(s) 299
EcoT14I CCWWGG 1 cut(s) 216
ErhI CCWWGG 1 cut(s) 216
FaiI YATR 8 cut(s) 78, 92, 145, 147, 239, 291, 423, 428
FauNDI CATATG 1 cut(s) 145
Fnu4HI GCNGC 2 cut(s) 171, 264
FokI GGATG 2 cut(s) 318, 423
Fsp4HI GCNGC 2 cut(s) 171, 264
GlaI GCGC 1 cut(s) 150
GluI GCNGC 2 cut(s) 171, 264
HapII CCGG 2 cut(s) 70, 123
HhaI GCGC 1 cut(s) 151
Hin6I GCGC 1 cut(s) 149
HinP1I GCGC 1 cut(s) 149
HindIII AAGCTT 1 cut(s) 82
HpaII CCGG 2 cut(s) 70, 123
HphI GGTGA 1 cut(s) 145
Hpy166II GTNNAC 1 cut(s) 275
Hpy188I TCNGA 3 cut(s) 111, 189, 200
Hpy188III TCNNGA 2 cut(s) 123, 322
Hpy8I GTNNAC 1 cut(s) 275
HpyCH4III ACNGT 2 cut(s) 226, 438
HpyCH4V TGCA 1 cut(s) 32
HpyF10VI GCNNNNNNNGC 1 cut(s) 170
HpyF3I CTNAG 2 cut(s) 186, 381
HspAI GCGC 1 cut(s) 149
Kpn2I TCCGGA 1 cut(s) 122
Kzo9I GATC 1 cut(s) 175
LpnPI CCDG 8 cut(s) 66, 83, 116, 136, 270, 286, 313, 388
Lsp1109I GCAGC 2 cut(s) 157, 275
LweI GCATC 1 cut(s) 315
MaeIII GTNAC 3 cut(s) 19, 39, 226
MalI GATC 1 cut(s) 177
MboI GATC 1 cut(s) 175
MboII GAAGA 1 cut(s) 98
MluCI AATT 2 cut(s) 234, 330
MnlI CCTC 2 cut(s) 194, 376
MroI TCCGGA 1 cut(s) 122
MseI TTAA 2 cut(s) 194, 387
MspA1I CMGCKG 1 cut(s) 164
MspI CCGG 2 cut(s) 70, 123
MspR9I CCNGG 2 cut(s) 71, 301
MvaI CCWGG 1 cut(s) 301
MwoI GCNNNNNNNGC 1 cut(s) 170
NciI CCSGG 1 cut(s) 71
NdeI CATATG 1 cut(s) 145
NdeII GATC 1 cut(s) 175
PflMI CCANNNNNTGG 1 cut(s) 306
PkrI GCNGC 2 cut(s) 172, 265
Psp6I CCWGG 1 cut(s) 299
PspGI CCWGG 1 cut(s) 299
PspPI GGNCC 2 cut(s) 140, 272
PvuII CAGCTG 1 cut(s) 164
RsaI GTAC 2 cut(s) 184, 247
RsaNI GTAC 2 cut(s) 183, 246
SaqAI TTAA 2 cut(s) 194, 387
SatI GCNGC 2 cut(s) 171, 264
Sau3AI GATC 1 cut(s) 175
Sau96I GGNCC 2 cut(s) 140, 272
ScrFI CCNGG 2 cut(s) 71, 301
SetI ASST 6 cut(s) 13, 86, 166, 194, 268, 387
SfaNI GCATC 1 cut(s) 315
SinI GGWCC 2 cut(s) 140, 272
Sse9I AATT 2 cut(s) 234, 330
SsiI CCGC 1 cut(s) 231
StyD4I CCNGG 2 cut(s) 69, 299
StyI CCWWGG 1 cut(s) 216
TaaI ACNGT 2 cut(s) 226, 438
TaqI TCGA 2 cut(s) 26, 296
TasI AATT 2 cut(s) 234, 330
Tru1I TTAA 2 cut(s) 194, 387
Tru9I TTAA 2 cut(s) 194, 387
TseI GCWGC 2 cut(s) 170, 263
Van91I CCANNNNNTGG 1 cut(s) 306
VpaK11BI GGWCC 2 cut(s) 140, 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.