MD02G1014100.v1.1

glycerol-3-phosphate transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0001726
Physical Location & Seq
Forward (+)
928591 .. 929791
1201 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1014100.v1.1.491

Sequence Viewer

Length: 771 bp
ATGAGAGCTATAACTATACCAGCACGCCCATATCTTGCCGCGATGTGTAGAGCAGTATCACCACTCTCGTTCTGCTGCCATAGTAATGCTGGACACATTTTAAGGATACCCTTTCACAGTGTTCACTTAGAAAACCCTGAGTTTTCCTACTCTGCTGATGATGCCGGCGAGACTCCTCTCTACCTAGCTGTCGAGAGGGGATACGATCATTATTGTCTTCAAATACTTGAAGGTTGCAAAAATCCAACATATGAAGGCCCAAATGGTAGGATGGCTTTGCACGCTGCAGTTATCCGCAATGATGAAGCTGTTGCCGGCGTGCATTTGTCACACAAAACTGCCGGGAACCTTTCAGCCATATTCGATGTTGGAGGAGTCTTTGGTGGAATTTTAGCAGGATTGATATCTGATATGCTCGAAGCTAGAGCTGTAACCTCAATCGCGTTTTTGTTACTTTCGGTTCCAGCCCTTGTTCTCTACCGGTTTTATGGAAGCCTATCGATGGTCGCCAACATTGTTTTGATGTTTCTTTCGGGATTGCTGGTGAATGGGCCGTACTCACTCATCACAACAGCCGCTGCTGCTGATCTTGGTACGCAGACCACGATCAAAGGAAATTCCCAAGCATTAGCCACTGTAACTGCAATCATAGACGGAATAGGTTCTGTTGCAGCTCTTGGCCCGCTTTTGGCCGGGTATATCTCCACGACGGGGTGGAACAACGTGTTTGTTATACTGATTCTTGCTATTTTCTGTGCAATTTGTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0042592 GO:0048878 GO:0050801 GO:0055062 GO:0055081 GO:0055083 GO:0065007 GO:0065008 GO:0072505 GO:0072506 GO:0098771
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MFS_1

Protein Analysis

257

Amino Acids

27.01

Weight (kDa)

6.02

Isoelectric Point (pI)

26.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 107 - 253 7.3e-08 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 41, 443
AciI CCGC 4 cut(s) 39, 295, 576, 683
AcoI YGGCCR 1 cut(s) 690
AcsI RAATTY 2 cut(s) 387, 616
AfaI GTAC 2 cut(s) 557, 595
AfiI CCNNNNNNNGG 3 cut(s) 502, 688, 711
AflIII ACRYGT 1 cut(s) 723
AgeI ACCGGT 1 cut(s) 480
AgsI TTSAA 2 cut(s) 221, 230
AluBI AGCT 6 cut(s) 8, 188, 308, 422, 428, 674
AluI AGCT 6 cut(s) 8, 188, 308, 422, 428, 674
Alw26I GTCTC 1 cut(s) 164
AlwNI CAGNNNCTG 1 cut(s) 578
AoxI GGCC 4 cut(s) 256, 551, 679, 690
ApeKI GCWGC 5 cut(s) 75, 284, 578, 581, 671
ApoI RAATTY 2 cut(s) 387, 616
AsiGI ACCGGT 1 cut(s) 480
Asp700I GAANNNNTTC 1 cut(s) 661
AspS9I GGNCC 3 cut(s) 257, 551, 680
AsuC2I CCSGG 2 cut(s) 343, 694
AsuHPI GGTGA 2 cut(s) 51, 556
BbsI GAAGAC 1 cut(s) 209
BbvI GCAGC 5 cut(s) 62, 271, 565, 568, 683
BccI CCATC 2 cut(s) 265, 496
BceAI ACGGC 1 cut(s) 538
BciVI GTATCC 2 cut(s) 99, 194
BcnI CCSGG 2 cut(s) 343, 694
BcoDI GTCTC 1 cut(s) 164
BfaI CTAG 2 cut(s) 185, 423
BfmI CTRYAG 1 cut(s) 285
BfuI GTATCC 2 cut(s) 99, 194
BisI GCNGC 7 cut(s) 39, 76, 285, 576, 579, 582, 672
BlsI GCNGC 7 cut(s) 40, 77, 286, 577, 580, 583, 673
Bme1390I CCNGG 2 cut(s) 343, 694
BmgT120I GGNCC 3 cut(s) 257, 551, 680
BmiI GGNNCC 2 cut(s) 347, 462
BmrFI CCNGG 2 cut(s) 343, 694
BmsI GCATC 1 cut(s) 151
BpiI GAAGAC 1 cut(s) 209
BpuMI CCSGG 2 cut(s) 343, 694
Bsa29I ATCGAT 1 cut(s) 500
BsaBI GATNNNNATC 1 cut(s) 403
BsaWI WCCGGW 1 cut(s) 480
Bsc4I CCNNNNNNNGG 3 cut(s) 502, 688, 711
Bse118I RCCGGY 3 cut(s) 164, 314, 480
Bse3DI GCAATG 1 cut(s) 304
Bse8I GATNNNNATC 1 cut(s) 403
BseCI ATCGAT 1 cut(s) 500
BseGI GGATG 1 cut(s) 276
BseJI GATNNNNATC 1 cut(s) 403
BseLI CCNNNNNNNGG 3 cut(s) 502, 688, 711
BseMI GCAATG 1 cut(s) 304
BseMII CTCAG 1 cut(s) 129
BseRI GAGGAG 2 cut(s) 165, 387
BseXI GCAGC 5 cut(s) 62, 271, 565, 568, 683
Bsh1236I CGCG 2 cut(s) 41, 443
BshFI GGCC 4 cut(s) 258, 553, 681, 692
BshTI ACCGGT 1 cut(s) 480
BshVI ATCGAT 1 cut(s) 500
BsiSI CCGG 5 cut(s) 165, 315, 342, 481, 693
BslI CCNNNNNNNGG 3 cut(s) 502, 688, 711
BsmAI GTCTC 1 cut(s) 164
BsnI GGCC 4 cut(s) 258, 553, 681, 692
Bsp143I GATC 3 cut(s) 205, 586, 606
BspACI CCGC 4 cut(s) 39, 295, 576, 683
BspANI GGCC 4 cut(s) 258, 553, 681, 692
BspCNI CTCAG 1 cut(s) 130
BspDI ATCGAT 1 cut(s) 500
BspFNI CGCG 2 cut(s) 41, 443
BspLI GGNNCC 2 cut(s) 347, 462
BspMAI CTGCAG 1 cut(s) 289
BsrDI GCAATG 1 cut(s) 304
BsrFI RCCGGY 3 cut(s) 164, 314, 480
BssAI RCCGGY 3 cut(s) 164, 314, 480
BssMI GATC 3 cut(s) 205, 586, 606
Bst4CI ACNGT 2 cut(s) 119, 637
BstC8I GCNNGC 6 cut(s) 25, 166, 282, 316, 320, 683
BstDEI CTNAG 2 cut(s) 127, 138
BstF5I GGATG 1 cut(s) 276
BstFNI CGCG 2 cut(s) 41, 443
BstKTI GATC 3 cut(s) 208, 589, 609
BstMAI GTCTC 1 cut(s) 164
BstMBI GATC 3 cut(s) 205, 586, 606
BstMWI GCNNNNNNNGC 3 cut(s) 161, 281, 581
BstSCI CCNGG 2 cut(s) 341, 692
BstSFI CTRYAG 1 cut(s) 285
BstUI CGCG 2 cut(s) 41, 443
BstV1I GCAGC 5 cut(s) 62, 271, 565, 568, 683
BstV2I GAAGAC 1 cut(s) 209
Bsu15I ATCGAT 1 cut(s) 500
BsuI GTATCC 2 cut(s) 99, 194
BsuRI GGCC 4 cut(s) 258, 553, 681, 692
BsuTUI ATCGAT 1 cut(s) 500
BtgZI GCGATG 1 cut(s) 56
BtsCI GGATG 1 cut(s) 276
BtsIMutI CAGTG 2 cut(s) 124, 633
Cac8I GCNNGC 6 cut(s) 25, 166, 282, 316, 320, 683
CaiI CAGNNNCTG 1 cut(s) 578
Cfr10I RCCGGY 3 cut(s) 164, 314, 480
Cfr13I GGNCC 3 cut(s) 257, 551, 680
ClaI ATCGAT 1 cut(s) 500
Csp6I GTAC 2 cut(s) 556, 594
CspAI ACCGGT 1 cut(s) 480
CviQI GTAC 2 cut(s) 556, 594
DdeI CTNAG 2 cut(s) 127, 138
DpnI GATC 3 cut(s) 207, 588, 608
DpnII GATC 3 cut(s) 205, 586, 606
EaeI YGGCCR 1 cut(s) 690
Eco32I GATATC 1 cut(s) 405
EcoRV GATATC 1 cut(s) 405
FauI CCCGC 1 cut(s) 690
FauNDI CATATG 1 cut(s) 250
Fnu4HI GCNGC 7 cut(s) 39, 76, 285, 576, 579, 582, 672
FokI GGATG 1 cut(s) 283
Fsp4HI GCNGC 7 cut(s) 39, 76, 285, 576, 579, 582, 672
FspBI CTAG 2 cut(s) 185, 423
GluI GCNGC 7 cut(s) 39, 76, 285, 576, 579, 582, 672
HaeIII GGCC 4 cut(s) 258, 553, 681, 692
HapII CCGG 5 cut(s) 165, 315, 342, 481, 693
HinfI GANTC 3 cut(s) 172, 375, 739
HpaII CCGG 5 cut(s) 165, 315, 342, 481, 693
HphI GGTGA 2 cut(s) 51, 556
Hpy166II GTNNAC 1 cut(s) 124
Hpy188I TCNGA 1 cut(s) 409
Hpy188III TCNNGA 2 cut(s) 193, 534
Hpy8I GTNNAC 1 cut(s) 124
Hpy99I CGWCG 1 cut(s) 712
HpyAV CCTTC 2 cut(s) 224, 248
HpyCH4III ACNGT 2 cut(s) 119, 637
HpyCH4IV ACGT 1 cut(s) 723
HpyCH4V TGCA 7 cut(s) 237, 280, 287, 322, 644, 671, 758
HpyF10VI GCNNNNNNNGC 3 cut(s) 161, 281, 581
HpyF3I CTNAG 2 cut(s) 127, 138
HpySE526I ACGT 1 cut(s) 723
KroI GCCGGC 2 cut(s) 164, 314
KroNI GCCGGC 2 cut(s) 166, 316
Kzo9I GATC 3 cut(s) 205, 586, 606
Lsp1109I GCAGC 5 cut(s) 62, 271, 565, 568, 683
LweI GCATC 1 cut(s) 151
MaeI CTAG 2 cut(s) 185, 423
MaeII ACGT 1 cut(s) 723
MaeIII GTNAC 4 cut(s) 327, 430, 450, 637
MalI GATC 3 cut(s) 207, 588, 608
MboI GATC 3 cut(s) 205, 586, 606
MboII GAAGA 1 cut(s) 209
MluCI AATT 3 cut(s) 387, 616, 759
MlyI GAGTC 2 cut(s) 166, 384
MmeI TCCRAC 2 cut(s) 269, 349
MnlI CCTC 4 cut(s) 186, 189, 365, 445
MroNI GCCGGC 2 cut(s) 164, 314
MroXI GAANNNNTTC 1 cut(s) 661
MseI TTAA 1 cut(s) 101
MslI CAYNNNNRTG 1 cut(s) 84
MspA1I CMGCKG 1 cut(s) 578
MspI CCGG 5 cut(s) 165, 315, 342, 481, 693
MspR9I CCNGG 2 cut(s) 343, 694
MvnI CGCG 2 cut(s) 41, 443
MwoI GCNNNNNNNGC 3 cut(s) 161, 281, 581
NaeI GCCGGC 2 cut(s) 166, 316
NciI CCSGG 2 cut(s) 343, 694
NdeI CATATG 1 cut(s) 250
NdeII GATC 3 cut(s) 205, 586, 606
NgoMIV GCCGGC 2 cut(s) 164, 314
NlaIV GGNNCC 2 cut(s) 347, 462
NmuCI GTSAC 1 cut(s) 327
PcsI WCGNNNNNNNCGW 1 cut(s) 602
PdiI GCCGGC 2 cut(s) 166, 316
PdmI GAANNNNTTC 1 cut(s) 661
PfeI GAWTC 1 cut(s) 739
PinAI ACCGGT 1 cut(s) 480
PkrI GCNGC 7 cut(s) 40, 77, 286, 577, 580, 583, 673
PleI GAGTC 2 cut(s) 166, 383
PpsI GAGTC 2 cut(s) 166, 383
PspN4I GGNNCC 2 cut(s) 347, 462
PspPI GGNCC 3 cut(s) 257, 551, 680
PstI CTGCAG 1 cut(s) 289
PstNI CAGNNNCTG 1 cut(s) 578
RsaI GTAC 2 cut(s) 557, 595
RsaNI GTAC 2 cut(s) 556, 594
RseI CAYNNNNRTG 1 cut(s) 84
SaqAI TTAA 1 cut(s) 101
SatI GCNGC 7 cut(s) 39, 76, 285, 576, 579, 582, 672
Sau3AI GATC 3 cut(s) 205, 586, 606
Sau96I GGNCC 3 cut(s) 257, 551, 680
SchI GAGTC 2 cut(s) 166, 384
ScrFI CCNGG 2 cut(s) 343, 694
SfaNI GCATC 1 cut(s) 151
SfcI CTRYAG 1 cut(s) 285
SmiMI CAYNNNNRTG 1 cut(s) 84
Sse9I AATT 3 cut(s) 387, 616, 759
SsiI CCGC 4 cut(s) 39, 295, 576, 683
SspMI CTAG 2 cut(s) 185, 423
StyD4I CCNGG 2 cut(s) 341, 692
TaaI ACNGT 2 cut(s) 119, 637
TaiI ACGT 1 cut(s) 726
TaqI TCGA 4 cut(s) 192, 363, 417, 500
TasI AATT 3 cut(s) 387, 616, 759
TauI GCSGC 2 cut(s) 41, 578
TfiI GAWTC 1 cut(s) 739
Tru1I TTAA 1 cut(s) 101
Tru9I TTAA 1 cut(s) 101
TscAI CASTG 2 cut(s) 124, 640
TseFI GTSAC 1 cut(s) 327
TseI GCWGC 5 cut(s) 75, 284, 578, 581, 671
Tsp45I GTSAC 1 cut(s) 327
TspDTI ATGAA 2 cut(s) 267, 318
TspGWI ACGGA 1 cut(s) 669
TspRI CASTG 2 cut(s) 124, 640
XapI RAATTY 2 cut(s) 387, 616
XcmI CCANNNNNNNNNTGG 1 cut(s) 86
XmnI GAANNNNTTC 1 cut(s) 661
XspI CTAG 2 cut(s) 185, 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.