Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001726

Physical Location & Seq

Genomic Coordinates Reverse (-)

30875452 .. 30875739

Gene Structure 288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG178900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGTGGAAGTCGTCGGAGCTGAAGAAGCCGATGTCATGGTCATGGTGGAAGTACTGCTCGACGGGAACCGGAATAGGAACGTAATCGTAGACTTGGGCGTGTATTTCAATTTCTTCCCGACCCTAAAACCCCCAAACAAAACCCTAGCTTTCCACCAAATCTCAGTCCTAATCATCACCTTCCTCGCCTACGCTTCCTTCCACGCCTCCAGAAAGCCCCCCAGCATTGTCAAGAGCATTCTTGACCCCAAACTCCAGTCCAATTCGAGCTCATTCGACACCGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0042592 GO:0048878 GO:0050801 GO:0055062 GO:0055081 GO:0055083 GO:0065007 GO:0065008 GO:0072505 GO:0072506 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1

Protein Analysis

95

Amino Acids

10.5

Weight (kDa)

6.03

Isoelectric Point (pI)

32.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001726)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13100 AT2G13100 AT2G13100 AT2G13100
fragaria_vesca	FvH4_1g01800
malus_domestica	MD02G1013700.v1.1 MD02G1014100.v1.1 MD04G1051200.v1.1 MD15G1160500.v1.1
prunus_persica	Prupe.7G255700_v2.0.a1 Prupe.7G255700_v2.0.a1
pyrus_communis	pycom02g01270 pycom04g04510 pycom15g14430
rosa_chinensis	RchiOBHm_Chr2g0086771 RchiOBHm_Chr4g0393381 RchiOBHm_Chr4g0439391 RchiOBHm_Chr7g0234391
rosa_laevigata	RLG00000015790 RLG00000017046 RLG00000032265 RLG00000033393
rosa_multiflora	Rmu_sc0001981.1_g000056 Rmu_sc0003226.1_g000089 Rmu_sc0005498.1_g000004 Rmu_sc0034546.1_g000001
rosa_roxburghii	Rroxscaffold_2G00154210 Rroxscaffold_3G00261580
rosa_rugosa	Rorug01G0469200 Rorug05G0053100 Rorug05G0053200 Rorug05G0053300
rosa_samantha	Rh1BG358100 Rh2AG021700 Rh2BG021700 Rh2CG022500 Rh2CG022600 Rh2DG022300 Rh3AG088200 Rh4BG042700 Rh5BG362500 Rh6AG178900 Rh6DG482900 Rh7BG011800
rosa_wichuraiana	Rw2G001740 Rw3G005830 Rw5G029340 Rw6G019570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	90
AcuI	CTGAAG	1 cut(s)	42
AfaI	GTAC	1 cut(s)	54
AgsI	TTSAA	1 cut(s)	109
AluBI	AGCT	3 cut(s)	20, 149, 270
AluI	AGCT	3 cut(s)	20, 149, 270
Alw21I	GWGCWC	1 cut(s)	272
AsuC2I	CCSGG	1 cut(s)	283
AsuHPI	GGTGA	1 cut(s)	169
BanII	GRGCYC	1 cut(s)	272
Bbv12I	GWGCWC	1 cut(s)	272
BcnI	CCSGG	1 cut(s)	283
BfaI	CTAG	1 cut(s)	146
BmcAI	AGTACT	1 cut(s)	54
Bme1390I	CCNGG	1 cut(s)	283
BmiI	GGNNCC	1 cut(s)	68
BmrFI	CCNGG	1 cut(s)	283
BpmI	CTGGAG	2 cut(s)	193, 239
BpuMI	CCSGG	1 cut(s)	283
BsaWI	WCCGGW	1 cut(s)	69
Bse1I	ACTGG	1 cut(s)	256
BseMII	CTCAG	1 cut(s)	177
BseNI	ACTGG	1 cut(s)	256
BseYI	CCCAGC	1 cut(s)	221
BsiHKAI	GWGCWC	1 cut(s)	272
BsiSI	CCGG	2 cut(s)	70, 282
BsmI	GAATGC	1 cut(s)	237
Bsp1286I	GDGCHC	1 cut(s)	272
BspCNI	CTCAG	1 cut(s)	176
BspLI	GGNNCC	1 cut(s)	68
BsrI	ACTGG	1 cut(s)	256
BstDEI	CTNAG	1 cut(s)	163
BstMWI	GCNNNNNNNGC	1 cut(s)	26
BstSCI	CCNGG	1 cut(s)	281
Csp6I	GTAC	1 cut(s)	53
CviAII	CATG	2 cut(s)	37, 43
CviJI	RGCY	5 cut(s)	20, 29, 149, 217, 270
CviKI_1	RGCY	5 cut(s)	20, 29, 149, 217, 270
CviQI	GTAC	1 cut(s)	53
DdeI	CTNAG	1 cut(s)	163
Ecl136II	GAGCTC	1 cut(s)	270
Eco24I	GRGCYC	1 cut(s)	272
Eco53kI	GAGCTC	1 cut(s)	270
Eco57I	CTGAAG	1 cut(s)	42
EcoICRI	GAGCTC	1 cut(s)	270
EcoT38I	GRGCYC	1 cut(s)	272
FaeI	CATG	2 cut(s)	40, 46
FaiI	YATR	2 cut(s)	38, 44
FatI	CATG	2 cut(s)	36, 42
FblI	GTMKAC	1 cut(s)	90
FriOI	GRGCYC	1 cut(s)	272
FspBI	CTAG	1 cut(s)	146
GsaI	CCCAGC	1 cut(s)	225
GsuI	CTGGAG	2 cut(s)	193, 239
HapII	CCGG	2 cut(s)	70, 282
Hin1II	CATG	2 cut(s)	40, 46
HpaII	CCGG	2 cut(s)	70, 282
HphI	GGTGA	1 cut(s)	169
Hpy166II	GTNNAC	1 cut(s)	91
Hpy188I	TCNGA	1 cut(s)	17
Hpy188III	TCNNGA	4 cut(s)	118, 210, 232, 242
Hpy8I	GTNNAC	1 cut(s)	91
Hpy99I	CGWCG	2 cut(s)	17, 65
HpyAV	CCTTC	2 cut(s)	190, 208
HpyCH4IV	ACGT	1 cut(s)	81
HpyF10VI	GCNNNNNNNGC	1 cut(s)	26
HpyF3I	CTNAG	1 cut(s)	163
HpySE526I	ACGT	1 cut(s)	81
Hsp92II	CATG	2 cut(s)	40, 46
LmnI	GCTCC	1 cut(s)	17
LpnPI	CCDG	4 cut(s)	83, 223, 235, 269
MaeI	CTAG	1 cut(s)	146
MaeII	ACGT	1 cut(s)	81
MboII	GAAGA	2 cut(s)	35, 106
MhlI	GDGCHC	1 cut(s)	272
MluCI	AATT	2 cut(s)	109, 262
MnlI	CCTC	2 cut(s)	194, 217
MslI	CAYNNNNRTG	1 cut(s)	41
MspI	CCGG	2 cut(s)	70, 282
MspR9I	CCNGG	1 cut(s)	283
Mva1269I	GAATGC	1 cut(s)	237
MwoI	GCNNNNNNNGC	1 cut(s)	26
NciI	CCSGG	1 cut(s)	283
NlaIII	CATG	2 cut(s)	40, 46
NlaIV	GGNNCC	1 cut(s)	68
PctI	GAATGC	1 cut(s)	237
Psp124BI	GAGCTC	1 cut(s)	272
PspFI	CCCAGC	1 cut(s)	221
PspN4I	GGNNCC	1 cut(s)	68
RsaI	GTAC	1 cut(s)	54
RsaNI	GTAC	1 cut(s)	53
RseI	CAYNNNNRTG	1 cut(s)	41
SacI	GAGCTC	1 cut(s)	272
ScaI	AGTACT	1 cut(s)	54
ScrFI	CCNGG	1 cut(s)	283
SduI	GDGCHC	1 cut(s)	272
SetI	ASST	5 cut(s)	22, 84, 151, 182, 272
SmiMI	CAYNNNNRTG	1 cut(s)	41
Sse9I	AATT	2 cut(s)	109, 262
SspMI	CTAG	1 cut(s)	146
SstI	GAGCTC	1 cut(s)	272
StyD4I	CCNGG	1 cut(s)	281
TaiI	ACGT	1 cut(s)	84
TaqI	TCGA	3 cut(s)	60, 266, 276
TasI	AATT	2 cut(s)	109, 262
TatI	WGTACW	1 cut(s)	52
XmiI	GTMKAC	1 cut(s)	90
XspI	CTAG	1 cut(s)	146
ZrmI	AGTACT	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.