Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001981.1

Orthogroup ID

OG0001726

Physical Location & Seq

Genomic Coordinates Reverse (-)

187190 .. 189204

Gene Structure 2015 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001981.1_g000056.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

atgtcatgttggttagctggcctaactaacactatagaggtcatggctgcgaatctcactgacatcaggggtgaggaaatgagtgcaggacatgagcacaagcaaacttttcaatgcggctgtaatggtggaactggctcaccaggaggctggtcaaattccaagagggctccctttaatgggcctcagggcacccacaggctcggagaacttgatcttgcatttctgtctgcattttctattgggatgtattttgcagggcatgtcggtgatgggattgatttgaggttgtttcttgcttatgggatgttggggagcggagttttgactcgtcttttcgggttaggttattggtgcaatgtgcatatgttgtggtattttgtgggtgtgcaagttgtgtgtgggttgtttcagtcgataggttggccttgtgttgtggcagttgtggggaattggtttgggaagacgaagcgggggttgataatgggggtgtggagttcacatacctcggttgggaacattgttggatcggttattgcttccggggttttgtgccactttgtttttgatacgcattgccagaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0042592 GO:0048878 GO:0050801 GO:0055062 GO:0055081 GO:0055083 GO:0065007 GO:0065008 GO:0072505 GO:0072506 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1

Protein Analysis

195

Amino Acids

20.94

Weight (kDa)

7.06

Isoelectric Point (pI)

31.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001726)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13100 AT2G13100 AT2G13100 AT2G13100
fragaria_vesca	FvH4_1g01800
malus_domestica	MD02G1013700.v1.1 MD02G1014100.v1.1 MD04G1051200.v1.1 MD15G1160500.v1.1
prunus_persica	Prupe.7G255700_v2.0.a1 Prupe.7G255700_v2.0.a1
pyrus_communis	pycom02g01270 pycom04g04510 pycom15g14430
rosa_chinensis	RchiOBHm_Chr2g0086771 RchiOBHm_Chr4g0393381 RchiOBHm_Chr4g0439391 RchiOBHm_Chr7g0234391
rosa_laevigata	RLG00000015790 RLG00000017046 RLG00000032265 RLG00000033393
rosa_multiflora	Rmu_sc0001981.1_g000056 Rmu_sc0003226.1_g000089 Rmu_sc0005498.1_g000004 Rmu_sc0034546.1_g000001
rosa_roxburghii	Rroxscaffold_2G00154210 Rroxscaffold_3G00261580
rosa_rugosa	Rorug01G0469200 Rorug05G0053100 Rorug05G0053200 Rorug05G0053300
rosa_samantha	Rh1BG358100 Rh2AG021700 Rh2BG021700 Rh2CG022500 Rh2CG022600 Rh2DG022300 Rh3AG088200 Rh4BG042700 Rh5BG362500 Rh6AG178900 Rh6DG482900 Rh7BG011800
rosa_wichuraiana	Rw2G001740 Rw3G005830 Rw5G029340 Rw6G019570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	191
AccBSI	CCGCTC	1 cut(s)	318
AciI	CCGC	3 cut(s)	117, 318, 472
AclWI	GGATC	1 cut(s)	535
AcsI	RAATTY	1 cut(s)	157
AfiI	CCNNNNNNNGG	3 cut(s)	179, 180, 513
AgsI	TTSAA	1 cut(s)	113
AjnI	CCWGG	1 cut(s)	142
AluBI	AGCT	1 cut(s)	17
AluI	AGCT	1 cut(s)	17
Alw21I	GWGCWC	1 cut(s)	99
AlwI	GGATC	1 cut(s)	535
AoxI	GGCC	3 cut(s)	19, 182, 425
ApeKI	GCWGC	1 cut(s)	47
ApoI	RAATTY	1 cut(s)	157
AspS9I	GGNCC	1 cut(s)	182
AsuC2I	CCSGG	1 cut(s)	544
AsuHPI	GGTGA	3 cut(s)	83, 132, 281
AxyI	CCTNAGG	1 cut(s)	186
BaeGI	GKGCMC	1 cut(s)	194
BanI	GGYRCC	1 cut(s)	191
BanII	GRGCYC	1 cut(s)	172
BbsI	GAAGAC	1 cut(s)	470
Bbv12I	GWGCWC	1 cut(s)	99
BbvI	GCAGC	1 cut(s)	34
BccI	CCATC	1 cut(s)	266
BciT130I	CCWGG	1 cut(s)	144
BcnI	CCSGG	1 cut(s)	544
BfmI	CTRYAG	1 cut(s)	33
BisI	GCNGC	2 cut(s)	48, 118
BlsI	GCNGC	2 cut(s)	49, 119
Bme1390I	CCNGG	2 cut(s)	144, 544
BmgT120I	GGNCC	1 cut(s)	182
BmiI	GGNNCC	2 cut(s)	171, 193
BmrFI	CCNGG	2 cut(s)	144, 544
BpiI	GAAGAC	1 cut(s)	470
BpuMI	CCSGG	1 cut(s)	544
BsaJI	CCNNGG	2 cut(s)	507, 543
Bsc4I	CCNNNNNNNGG	3 cut(s)	179, 180, 513
Bse1I	ACTGG	1 cut(s)	139
Bse21I	CCTNAGG	1 cut(s)	186
Bse3DI	GCAATG	2 cut(s)	364, 574
BseBI	CCWGG	1 cut(s)	144
BseDI	CCNNGG	2 cut(s)	507, 543
BseGI	GGATG	2 cut(s)	252, 312
BseLI	CCNNNNNNNGG	3 cut(s)	179, 180, 513
BseMI	GCAATG	2 cut(s)	364, 574
BseMII	CTCAG	1 cut(s)	200
BseNI	ACTGG	1 cut(s)	139
BseSI	GKGCMC	1 cut(s)	194
BseXI	GCAGC	1 cut(s)	34
BsgI	GTGCAG	1 cut(s)	105
BshFI	GGCC	3 cut(s)	21, 184, 427
BshNI	GGYRCC	1 cut(s)	191
BsiHKAI	GWGCWC	1 cut(s)	99
BsiSI	CCGG	1 cut(s)	543
BslI	CCNNNNNNNGG	3 cut(s)	179, 180, 513
BsnI	GGCC	3 cut(s)	21, 184, 427
Bsp1286I	GDGCHC	3 cut(s)	99, 172, 194
Bsp143I	GATC	2 cut(s)	214, 527
BspACI	CCGC	3 cut(s)	117, 318, 472
BspANI	GGCC	3 cut(s)	21, 184, 427
BspCNI	CTCAG	1 cut(s)	199
BspLI	GGNNCC	2 cut(s)	171, 193
BspPI	GGATC	1 cut(s)	535
BspT107I	GGYRCC	1 cut(s)	191
BsrBI	CCGCTC	1 cut(s)	318
BsrDI	GCAATG	2 cut(s)	364, 574
BsrI	ACTGG	1 cut(s)	139
BssECI	CCNNGG	2 cut(s)	507, 543
BssMI	GATC	2 cut(s)	214, 527
Bst2UI	CCWGG	1 cut(s)	144
BstC8I	GCNNGC	1 cut(s)	19
BstDEI	CTNAG	1 cut(s)	186
BstF5I	GGATG	2 cut(s)	252, 312
BstKTI	GATC	2 cut(s)	217, 530
BstMBI	GATC	2 cut(s)	214, 527
BstNI	CCWGG	1 cut(s)	144
BstNSI	RCATGY	1 cut(s)	266
BstSCI	CCNGG	2 cut(s)	142, 542
BstSFI	CTRYAG	1 cut(s)	33
BstSLI	GKGCMC	1 cut(s)	194
BstV1I	GCAGC	1 cut(s)	34
BstV2I	GAAGAC	1 cut(s)	470
BstXI	CCANNNNNNTGG	1 cut(s)	150
Bsu36I	CCTNAGG	1 cut(s)	186
BsuRI	GGCC	3 cut(s)	21, 184, 427
BtsCI	GGATG	2 cut(s)	252, 312
BtsIMutI	CAGTG	1 cut(s)	57
Cac8I	GCNNGC	1 cut(s)	19
Cfr13I	GGNCC	1 cut(s)	182
CviAII	CATG	4 cut(s)	6, 43, 92, 263
DdeI	CTNAG	1 cut(s)	186
DpnI	GATC	2 cut(s)	216, 529
DpnII	GATC	2 cut(s)	214, 527
Eco24I	GRGCYC	1 cut(s)	172
Eco81I	CCTNAGG	1 cut(s)	186
EcoRII	CCWGG	1 cut(s)	142
EcoT38I	GRGCYC	1 cut(s)	172
FaeI	CATG	4 cut(s)	9, 46, 95, 266
FaiI	YATR	9 cut(s)	7, 35, 44, 93, 264, 303, 366, 368, 504
FatI	CATG	4 cut(s)	5, 42, 91, 262
FauI	CCCGC	1 cut(s)	465
FauNDI	CATATG	1 cut(s)	366
Fnu4HI	GCNGC	2 cut(s)	48, 118
FokI	GGATG	2 cut(s)	259, 319
FriOI	GRGCYC	1 cut(s)	172
Fsp4HI	GCNGC	2 cut(s)	48, 118
GluI	GCNGC	2 cut(s)	48, 118
HaeIII	GGCC	3 cut(s)	21, 184, 427
HapII	CCGG	1 cut(s)	543
Hin1II	CATG	4 cut(s)	9, 46, 95, 266
HinfI	GANTC	2 cut(s)	52, 328
HpaII	CCGG	1 cut(s)	543
HphI	GGTGA	3 cut(s)	83, 132, 281
Hpy166II	GTNNAC	1 cut(s)	500
Hpy188I	TCNGA	1 cut(s)	206
Hpy8I	GTNNAC	1 cut(s)	500
HpyCH4V	TGCA	7 cut(s)	86, 221, 233, 257, 357, 364, 391
HpyF3I	CTNAG	1 cut(s)	186
Hsp92II	CATG	4 cut(s)	9, 46, 95, 266
Kzo9I	GATC	2 cut(s)	214, 527
LmnI	GCTCC	2 cut(s)	175, 315
Lsp1109I	GCAGC	1 cut(s)	34
MalI	GATC	2 cut(s)	216, 529
MbiI	CCGCTC	1 cut(s)	318
MboI	GATC	2 cut(s)	214, 527
MboII	GAAGA	1 cut(s)	475
MhlI	GDGCHC	3 cut(s)	99, 172, 194
MluCI	AATT	2 cut(s)	157, 451
MlyI	GAGTC	1 cut(s)	322
MmeI	TCCRAC	1 cut(s)	505
MnlI	CCTC	7 cut(s)	31, 67, 140, 159, 195, 279, 517
MseI	TTAA	1 cut(s)	177
MslI	CAYNNNNRTG	1 cut(s)	267
MspI	CCGG	1 cut(s)	543
MspR9I	CCNGG	2 cut(s)	144, 544
MvaI	CCWGG	1 cut(s)	144
NciI	CCSGG	1 cut(s)	544
NdeI	CATATG	1 cut(s)	366
NdeII	GATC	2 cut(s)	214, 527
NlaIII	CATG	4 cut(s)	9, 46, 95, 266
NlaIV	GGNNCC	2 cut(s)	171, 193
NspI	RCATGY	1 cut(s)	266
PfeI	GAWTC	1 cut(s)	52
PkrI	GCNGC	2 cut(s)	49, 119
PleI	GAGTC	1 cut(s)	322
PpsI	GAGTC	1 cut(s)	322
Psp6I	CCWGG	1 cut(s)	142
PspGI	CCWGG	1 cut(s)	142
PspN4I	GGNNCC	2 cut(s)	171, 193
PspPI	GGNCC	1 cut(s)	182
RseI	CAYNNNNRTG	1 cut(s)	267
SaqAI	TTAA	1 cut(s)	177
SatI	GCNGC	2 cut(s)	48, 118
Sau3AI	GATC	2 cut(s)	214, 527
Sau96I	GGNCC	1 cut(s)	182
SchI	GAGTC	1 cut(s)	322
ScrFI	CCNGG	2 cut(s)	144, 544
SduI	GDGCHC	3 cut(s)	99, 172, 194
SetI	ASST	6 cut(s)	19, 42, 290, 349, 424, 509
SfcI	CTRYAG	1 cut(s)	33
SmiMI	CAYNNNNRTG	1 cut(s)	267
Sse9I	AATT	2 cut(s)	157, 451
SsiI	CCGC	3 cut(s)	117, 318, 472
StyD4I	CCNGG	2 cut(s)	142, 542
TaqI	TCGA	1 cut(s)	416
TasI	AATT	2 cut(s)	157, 451
TauI	GCSGC	1 cut(s)	120
TfiI	GAWTC	1 cut(s)	52
Tru1I	TTAA	1 cut(s)	177
Tru9I	TTAA	1 cut(s)	177
TscAI	CASTG	1 cut(s)	64
TseI	GCWGC	1 cut(s)	47
TspRI	CASTG	1 cut(s)	64
XapI	RAATTY	1 cut(s)	157
XceI	RCATGY	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.