RLG00000032265

glycerol-3-phosphate transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0001726
Physical Location & Seq
Forward (+)
12814149 .. 12814855
707 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032265

Sequence Viewer

Length: 612 bp
ATGGTGGAAGTCGTCGGAGCTGAAGAAGCCGGTGTCATGGTCATGGTGGAAGCACTGCTCGACAGGAACCGGAACAGGAACATAATCGTAGACTTGGGCGTGTATTTCAATTTCTTCCTGACCCTAAAACCCCCAAACAAAACCATAGCTTTCCACCAAATCTCAGTCCTAATCATCACCTTCCTCGCCTACGCTTCCTTCCACTCCTCCAGAAAGCCCCCAGCATTGTCAAGAGCTTTCTTGAGCCCAAACTCCAGTCCAATTCGAGCTCATTCGATACTGGGGCATGTTGGTGATAGGATTGATTTGAGGTTGTTTCTTGCTTATGGGATGTTGGGGAGTGGAGTTTTGACTTGTCTTTTTGGGTTAGGTTATTGGTGCAATGTGCATATGTTGCGGTATTTTGTGGGTGTGCAAGTTGTGTGTGGGTTGTTTCAGTCGATAGGTTGGCCTTGTGTTGTGGCAGTTGTGGGGAATTGGTTTGGGAAGATGAAGCGGGGGTTGATAATGGGGGTGTGGAGTTCACATACCTCGGTTGGGAACATTGTTGGATCGGTTATTGCTTCCGGGGTTTTGTGCCACTTTGTTTTTGATACGCATTGCCAGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0042592 GO:0048878 GO:0050801 GO:0055062 GO:0055081 GO:0055083 GO:0065007 GO:0065008 GO:0072505 GO:0072506 GO:0098771
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MFS_1

Protein Analysis

204

Amino Acids

22.32

Weight (kDa)

9.19

Isoelectric Point (pI)

29.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 93 - 192 5.2e-16 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 90
AciI CCGC 2 cut(s) 397, 496
AclWI GGATC 1 cut(s) 559
AcuI CTGAAG 1 cut(s) 42
AfiI CCNNNNNNNGG 1 cut(s) 537
AgsI TTSAA 1 cut(s) 109
AluBI AGCT 4 cut(s) 20, 149, 236, 269
AluI AGCT 4 cut(s) 20, 149, 236, 269
Alw21I GWGCWC 1 cut(s) 271
AlwI GGATC 1 cut(s) 559
AoxI GGCC 1 cut(s) 449
AsuC2I CCSGG 1 cut(s) 568
AsuHPI GGTGA 2 cut(s) 169, 305
BanII GRGCYC 2 cut(s) 248, 271
Bbv12I GWGCWC 1 cut(s) 271
BcnI CCSGG 1 cut(s) 568
Bme1390I CCNGG 1 cut(s) 568
BmiI GGNNCC 1 cut(s) 68
BmrFI CCNGG 1 cut(s) 568
BmrI ACTGGG 1 cut(s) 290
BmuI ACTGGG 1 cut(s) 290
BpmI CTGGAG 2 cut(s) 193, 238
BpuEI CTTGAG 1 cut(s) 262
BpuMI CCSGG 1 cut(s) 568
BsaJI CCNNGG 2 cut(s) 531, 567
BsaWI WCCGGW 1 cut(s) 69
Bsc4I CCNNNNNNNGG 1 cut(s) 537
Bse118I RCCGGY 1 cut(s) 29
Bse1I ACTGG 2 cut(s) 255, 285
Bse3DI GCAATG 2 cut(s) 388, 598
BseDI CCNNGG 2 cut(s) 531, 567
BseGI GGATG 1 cut(s) 336
BseLI CCNNNNNNNGG 1 cut(s) 537
BseMI GCAATG 2 cut(s) 388, 598
BseMII CTCAG 1 cut(s) 177
BseNI ACTGG 2 cut(s) 255, 285
BseRI GAGGAG 1 cut(s) 196
BseYI CCCAGC 1 cut(s) 220
BshFI GGCC 1 cut(s) 451
BsiHKAI GWGCWC 1 cut(s) 271
BsiSI CCGG 3 cut(s) 30, 70, 567
BslI CCNNNNNNNGG 1 cut(s) 537
BsnI GGCC 1 cut(s) 451
Bsp1286I GDGCHC 2 cut(s) 248, 271
Bsp143I GATC 1 cut(s) 551
BspACI CCGC 2 cut(s) 397, 496
BspANI GGCC 1 cut(s) 451
BspCNI CTCAG 1 cut(s) 176
BspLI GGNNCC 1 cut(s) 68
BspPI GGATC 1 cut(s) 559
BsrDI GCAATG 2 cut(s) 388, 598
BsrFI RCCGGY 1 cut(s) 29
BsrI ACTGG 2 cut(s) 255, 285
BssAI RCCGGY 1 cut(s) 29
BssECI CCNNGG 2 cut(s) 531, 567
BssMI GATC 1 cut(s) 551
BstAPI GCANNNNNTGC 1 cut(s) 394
BstDEI CTNAG 1 cut(s) 163
BstF5I GGATG 1 cut(s) 336
BstKTI GATC 1 cut(s) 554
BstMBI GATC 1 cut(s) 551
BstMWI GCNNNNNNNGC 2 cut(s) 26, 394
BstNSI RCATGY 1 cut(s) 290
BstSCI CCNGG 1 cut(s) 566
BsuRI GGCC 1 cut(s) 451
BtsCI GGATG 1 cut(s) 336
BtsI GCAGTG 1 cut(s) 53
BtsIMutI CAGTG 1 cut(s) 53
Cfr10I RCCGGY 1 cut(s) 29
CviAII CATG 3 cut(s) 37, 43, 287
CviJI RGCY 8 cut(s) 20, 29, 149, 217, 236, 246, 269, 451
CviKI_1 RGCY 8 cut(s) 20, 29, 149, 217, 236, 246, 269, 451
DdeI CTNAG 1 cut(s) 163
DpnI GATC 1 cut(s) 553
DpnII GATC 1 cut(s) 551
Ecl136II GAGCTC 1 cut(s) 269
Eco24I GRGCYC 2 cut(s) 248, 271
Eco53kI GAGCTC 1 cut(s) 269
Eco57I CTGAAG 1 cut(s) 42
EcoICRI GAGCTC 1 cut(s) 269
EcoT38I GRGCYC 2 cut(s) 248, 271
FaeI CATG 3 cut(s) 40, 46, 290
FaiI YATR 9 cut(s) 38, 44, 83, 146, 288, 327, 390, 392, 528
FatI CATG 3 cut(s) 36, 42, 286
FauI CCCGC 1 cut(s) 489
FauNDI CATATG 1 cut(s) 390
FblI GTMKAC 1 cut(s) 90
FokI GGATG 1 cut(s) 343
FriOI GRGCYC 2 cut(s) 248, 271
GsaI CCCAGC 1 cut(s) 224
GsuI CTGGAG 2 cut(s) 193, 238
HaeIII GGCC 1 cut(s) 451
HapII CCGG 3 cut(s) 30, 70, 567
Hin1II CATG 3 cut(s) 40, 46, 290
HpaII CCGG 3 cut(s) 30, 70, 567
HphI GGTGA 2 cut(s) 169, 305
Hpy166II GTNNAC 2 cut(s) 91, 524
Hpy188I TCNGA 1 cut(s) 17
Hpy188III TCNNGA 4 cut(s) 118, 210, 231, 241
Hpy8I GTNNAC 2 cut(s) 91, 524
Hpy99I CGWCG 1 cut(s) 17
HpyAV CCTTC 2 cut(s) 190, 208
HpyCH4V TGCA 3 cut(s) 381, 388, 415
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 394
HpyF3I CTNAG 1 cut(s) 163
Hsp92II CATG 3 cut(s) 40, 46, 290
Kzo9I GATC 1 cut(s) 551
LmnI GCTCC 1 cut(s) 17
MalI GATC 1 cut(s) 553
MboI GATC 1 cut(s) 551
MboII GAAGA 3 cut(s) 35, 106, 499
MhlI GDGCHC 2 cut(s) 248, 271
MluCI AATT 3 cut(s) 109, 261, 475
MmeI TCCRAC 1 cut(s) 529
MnlI CCTC 4 cut(s) 194, 217, 303, 541
MslI CAYNNNNRTG 2 cut(s) 41, 291
MspI CCGG 3 cut(s) 30, 70, 567
MspR9I CCNGG 1 cut(s) 568
MwoI GCNNNNNNNGC 2 cut(s) 26, 394
NciI CCSGG 1 cut(s) 568
NdeI CATATG 1 cut(s) 390
NdeII GATC 1 cut(s) 551
NlaIII CATG 3 cut(s) 40, 46, 290
NlaIV GGNNCC 1 cut(s) 68
NspI RCATGY 1 cut(s) 290
Psp124BI GAGCTC 1 cut(s) 271
PspFI CCCAGC 1 cut(s) 220
PspN4I GGNNCC 1 cut(s) 68
RseI CAYNNNNRTG 2 cut(s) 41, 291
SacI GAGCTC 1 cut(s) 271
Sau3AI GATC 1 cut(s) 551
ScrFI CCNGG 1 cut(s) 568
SduI GDGCHC 2 cut(s) 248, 271
SetI ASST 9 cut(s) 22, 151, 182, 238, 271, 314, 373, 448, 533
SmiMI CAYNNNNRTG 2 cut(s) 41, 291
SmlI CTYRAG 1 cut(s) 241
SmoI CTYRAG 1 cut(s) 241
Sse9I AATT 3 cut(s) 109, 261, 475
SsiI CCGC 2 cut(s) 397, 496
SstI GAGCTC 1 cut(s) 271
StyD4I CCNGG 1 cut(s) 566
TaqI TCGA 4 cut(s) 60, 265, 275, 440
TasI AATT 3 cut(s) 109, 261, 475
TscAI CASTG 1 cut(s) 60
TspDTI ATGAA 1 cut(s) 506
TspRI CASTG 1 cut(s) 60
XceI RCATGY 1 cut(s) 290
XmiI GTMKAC 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.