Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001726

Physical Location & Seq

Genomic Coordinates Forward (+)

7723367 .. 7724091

Gene Structure 725 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG042700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGGTGGAAGTCGTCGGAGCTGAAGAAGCCGGTGTCATGGTCATGGTGGAAGTACTGCTTGACGGGAACCGGAACAGGAACGGTTGTGAATCTATAGCATTTAGTGGTTTGGTTGGTAGCCCAGATGGTAAGAACAATGATCGGTCTGGACAGCCAGATCAAGTGAACTGTGTTATAAGAGGGAGATATGTTCACAAAAGAAAAATAAAAATTGTGGCGTCTTATTATGAATGTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

79

Amino Acids

8.59

Weight (kDa)

6.55

Isoelectric Point (pI)

27.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001726)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13100 AT2G13100 AT2G13100 AT2G13100
fragaria_vesca	FvH4_1g01800
malus_domestica	MD02G1013700.v1.1 MD02G1014100.v1.1 MD04G1051200.v1.1 MD15G1160500.v1.1
prunus_persica	Prupe.7G255700_v2.0.a1 Prupe.7G255700_v2.0.a1
pyrus_communis	pycom02g01270 pycom04g04510 pycom15g14430
rosa_chinensis	RchiOBHm_Chr2g0086771 RchiOBHm_Chr4g0393381 RchiOBHm_Chr4g0439391 RchiOBHm_Chr7g0234391
rosa_laevigata	RLG00000015790 RLG00000017046 RLG00000032265 RLG00000033393
rosa_multiflora	Rmu_sc0001981.1_g000056 Rmu_sc0003226.1_g000089 Rmu_sc0005498.1_g000004 Rmu_sc0034546.1_g000001
rosa_roxburghii	Rroxscaffold_2G00154210 Rroxscaffold_3G00261580
rosa_rugosa	Rorug01G0469200 Rorug05G0053100 Rorug05G0053200 Rorug05G0053300
rosa_samantha	Rh1BG358100 Rh2AG021700 Rh2BG021700 Rh2CG022500 Rh2CG022600 Rh2DG022300 Rh3AG088200 Rh4BG042700 Rh5BG362500 Rh6AG178900 Rh6DG482900 Rh7BG011800
rosa_wichuraiana	Rw2G001740 Rw3G005830 Rw5G029340 Rw6G019570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	176
AcuI	CTGAAG	1 cut(s)	42
AcyI	GRCGYC	1 cut(s)	218
AfaI	GTAC	1 cut(s)	54
AluBI	AGCT	1 cut(s)	20
AluI	AGCT	1 cut(s)	20
BccI	CCATC	1 cut(s)	119
BfmI	CTRYAG	1 cut(s)	93
BmcAI	AGTACT	1 cut(s)	54
BmiI	GGNNCC	1 cut(s)	68
BsaHI	GRCGYC	1 cut(s)	218
BsaWI	WCCGGW	1 cut(s)	69
Bse118I	RCCGGY	1 cut(s)	29
BsiSI	CCGG	2 cut(s)	30, 70
Bsp143I	GATC	2 cut(s)	139, 157
BspLI	GGNNCC	1 cut(s)	68
BsrFI	RCCGGY	1 cut(s)	29
BssAI	RCCGGY	1 cut(s)	29
BssMI	GATC	2 cut(s)	139, 157
BssNI	GRCGYC	1 cut(s)	218
Bst4CI	ACNGT	2 cut(s)	83, 170
BstACI	GRCGYC	1 cut(s)	218
BstKTI	GATC	2 cut(s)	142, 160
BstMBI	GATC	2 cut(s)	139, 157
BstMWI	GCNNNNNNNGC	1 cut(s)	26
BstSFI	CTRYAG	1 cut(s)	93
Cfr10I	RCCGGY	1 cut(s)	29
CseI	GACGC	1 cut(s)	207
Csp6I	GTAC	1 cut(s)	53
CviAII	CATG	2 cut(s)	37, 43
CviJI	RGCY	4 cut(s)	20, 29, 120, 154
CviKI_1	RGCY	4 cut(s)	20, 29, 120, 154
CviQI	GTAC	1 cut(s)	53
DpnI	GATC	2 cut(s)	141, 159
DpnII	GATC	2 cut(s)	139, 157
Eco57I	CTGAAG	1 cut(s)	42
FaeI	CATG	2 cut(s)	40, 46
FaiI	YATR	6 cut(s)	38, 44, 95, 176, 189, 228
FalI	AAGNNNNNCTT	2 cut(s)	42, 74
FatI	CATG	2 cut(s)	36, 42
HapII	CCGG	2 cut(s)	30, 70
HgaI	GACGC	1 cut(s)	207
Hin1I	GRCGYC	1 cut(s)	218
Hin1II	CATG	2 cut(s)	40, 46
HinfI	GANTC	1 cut(s)	89
HpaII	CCGG	2 cut(s)	30, 70
Hpy166II	GTNNAC	2 cut(s)	166, 193
Hpy188I	TCNGA	1 cut(s)	17
Hpy188III	TCNNGA	1 cut(s)	147
Hpy8I	GTNNAC	2 cut(s)	166, 193
Hpy99I	CGWCG	1 cut(s)	17
HpyCH4III	ACNGT	2 cut(s)	83, 170
HpyF10VI	GCNNNNNNNGC	1 cut(s)	26
Hsp92I	GRCGYC	1 cut(s)	218
Hsp92II	CATG	2 cut(s)	40, 46
Kzo9I	GATC	2 cut(s)	139, 157
LmnI	GCTCC	1 cut(s)	17
LpnPI	CCDG	6 cut(s)	43, 61, 83, 132, 135, 168
MalI	GATC	2 cut(s)	141, 159
MboI	GATC	2 cut(s)	139, 157
MboII	GAAGA	1 cut(s)	35
MluCI	AATT	1 cut(s)	210
MnlI	CCTC	1 cut(s)	173
MslI	CAYNNNNRTG	1 cut(s)	41
MspI	CCGG	2 cut(s)	30, 70
MwoI	GCNNNNNNNGC	1 cut(s)	26
NdeII	GATC	2 cut(s)	139, 157
NlaIII	CATG	2 cut(s)	40, 46
NlaIV	GGNNCC	1 cut(s)	68
PfeI	GAWTC	1 cut(s)	89
PsiI	TTATAA	1 cut(s)	176
PspN4I	GGNNCC	1 cut(s)	68
RsaI	GTAC	1 cut(s)	54
RsaNI	GTAC	1 cut(s)	53
RseI	CAYNNNNRTG	1 cut(s)	41
Sau3AI	GATC	2 cut(s)	139, 157
ScaI	AGTACT	1 cut(s)	54
SetI	ASST	1 cut(s)	22
SfcI	CTRYAG	1 cut(s)	93
SmiMI	CAYNNNNRTG	1 cut(s)	41
Sse9I	AATT	1 cut(s)	210
TaaI	ACNGT	2 cut(s)	83, 170
TaqII	GACCGA	1 cut(s)	132
TasI	AATT	1 cut(s)	210
TatI	WGTACW	1 cut(s)	52
TfiI	GAWTC	1 cut(s)	89
ZrmI	AGTACT	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.