Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001726

Physical Location & Seq

Genomic Coordinates Forward (+)

942258 .. 944972

Gene Structure 2715 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g01800.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1515 bp

ATGGAATCCAAAACCCAATTAGCTCCAGCTCTCAATTTCTTCCCAACCCTAAAACCCCCAAACAGAACCCTAGCTTTCCACCAAATCTCAGTCCTGATCATCACCTTCCTTGCCTATGCTTCCTTCCACGCCTCCAGGAAGCCCCCCAGCATCGTCAAGAGTGTTCTTGGCCCCCAACTCCAGTCCAATTCGAGCTCTTTCGACACCGGTTGGGCTCCCTTTAATGGCCCTGATGGCACTCACAGGCTTGGAGAACTTGATCTTGCATTTCTATCTGCATATTCTATTGGAATGTATTTTGCAGGGCATGTTGGTGATAGGATTGATTTGAGGTTGTTTCTTGCTTATGGGATGTTAGGGAGTGGAGTTTTGACATGTCTTTTCGGGTTAGGTTATTGGTGCAATGTGCATATGTTGTGGTACTTTGTGGGTGTGCAAGTTGTGTGTGGGTTGTTTCAGTCAATAGGGTGGCCTTGTGTTGTGGCAGTTGTGGGGAATTGGTTTGGGAAGACGAAAAGGGGGTTGATAATGGGTGTGTGGAGTTCACATACTTCGGTTGGGAACATTGTGGGATCGGTTATTGCTTCCGGGGTTTTGGAATACGGATGGGGTTGGTCGTTTGTTGTGCCTGGAGTTTTGGTGATATTGGTGGGAGGTTTGGTGTTTTTGTTTCTTCCTGTGAGGCCGGAGGACTTGGGGTTTGAGGTGCCGGGGAAGGAGGAGGTTGAGATGAATCTGGAGGTTAATGGGGTGGTGAATGTGGAGAAGGTGGAATCAGAAGAAGCTGGATTACTTAGAGGGGAAAATGTAGATGCTGATGTTGGTGCTGGGGCGGAAACTTTGACTGCGATTGGGTTTTTGGAGGCGTGGAGGTTGCCGGGGGTTGCGCCATTTGCGTTCTGCCTCTTCTTTTCGAAGCTGGTGTCTTACACTTTCCTGTACTGGTTGCCTTTCTACATAAGGCACACAGCTGTTGCTGGGGTGCATCTGTCACACAAAACTGCTGGAAACCTTTCTACAATATTCGATATTGGAGGAGTCCTTGGTGGAATTCTAGCGGGATTGATATCAGATATGCTTGAAGCTCGGGCTGTTACATCAATTGCATTTTTGTTACTTTCAGTCCCAGCCCTTGTTCTCTACAGGGCATATGGAAGCTTATCTATGTTTGCCAACATTGTTCTGATGTTTATTGCCGGATTGCTGGTGAATGGTCCATATGCGCTCATCACAACAGCTGTTGCTGCTGATCTCGGCACTCAGACCTTAATCAGAGGCAATTCTCGTGCCTTGGCTACTGTAACCGCAATCATAGATGGTACGGGGTCTGTTGGAGCAGCTCTTGGTCCTCTTTTGGCAGGCTACATTTCAACAAGGGGATGGAACAGCGTTTTCTTGATGCTAATTGTTGCTATATTTTGTGCCACTTTGTTTTTGATACGCATTGCTAGAACTGAGATTAAAGAGAAGTTGAGCGGGAAAATATGGTTTTGGTGTAGCATAGACACACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0042592 GO:0048878 GO:0050801 GO:0055062 GO:0055081 GO:0055083 GO:0065007 GO:0065008 GO:0072505 GO:0072506 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1

Protein Analysis

505

Amino Acids

54.22

Weight (kDa)

6.51

Isoelectric Point (pI)

23.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_1	PF07690	86 - 416	1.5e-36	Major Facilitator Superfamily
MFS_1	PF07690	328 - 490	3.6e-11	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001726)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13100 AT2G13100 AT2G13100 AT2G13100
fragaria_vesca	FvH4_1g01800
malus_domestica	MD02G1013700.v1.1 MD02G1014100.v1.1 MD04G1051200.v1.1 MD15G1160500.v1.1
prunus_persica	Prupe.7G255700_v2.0.a1 Prupe.7G255700_v2.0.a1
pyrus_communis	pycom02g01270 pycom04g04510 pycom15g14430
rosa_chinensis	RchiOBHm_Chr2g0086771 RchiOBHm_Chr4g0393381 RchiOBHm_Chr4g0439391 RchiOBHm_Chr7g0234391
rosa_laevigata	RLG00000015790 RLG00000017046 RLG00000032265 RLG00000033393
rosa_multiflora	Rmu_sc0001981.1_g000056 Rmu_sc0003226.1_g000089 Rmu_sc0005498.1_g000004 Rmu_sc0034546.1_g000001
rosa_roxburghii	Rroxscaffold_2G00154210 Rroxscaffold_3G00261580
rosa_rugosa	Rorug01G0469200 Rorug05G0053100 Rorug05G0053200 Rorug05G0053300
rosa_samantha	Rh1BG358100 Rh2AG021700 Rh2BG021700 Rh2CG022500 Rh2CG022600 Rh2DG022300 Rh3AG088200 Rh4BG042700 Rh5BG362500 Rh6AG178900 Rh6DG482900 Rh7BG011800
rosa_wichuraiana	Rw2G001740 Rw3G005830 Rw5G029340 Rw6G019570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	706
AccBSI	CCGCTC	1 cut(s)	1476
AciI	CCGC	4 cut(s)	833, 1058, 1305, 1476
AclWI	GGATC	1 cut(s)	580
AcsI	RAATTY	1 cut(s)	1050
AfaI	GTAC	3 cut(s)	422, 941, 1321
AfiI	CCNNNNNNNGG	1 cut(s)	224
AflIII	ACRYGT	1 cut(s)	374
AgeI	ACCGGT	1 cut(s)	206
AgsI	TTSAA	2 cut(s)	1082, 1371
AjnI	CCWGG	2 cut(s)	134, 628
Alw21I	GWGCWC	1 cut(s)	197
AlwI	GGATC	1 cut(s)	580
Ama87I	CYCGRG	1 cut(s)	1086
AoxI	GGCC	4 cut(s)	169, 226, 470, 683
ApeKI	GCWGC	2 cut(s)	1244, 1337
ApoI	RAATTY	1 cut(s)	1050
ArsI	GACNNNNNNTTYG	4 cut(s)	683, 715, 908, 940
AsiGI	ACCGGT	1 cut(s)	206
Asp700I	GAANNNNTTC	1 cut(s)	1012
AspLEI	GCGC	2 cut(s)	889, 1225
AspS9I	GGNCC	4 cut(s)	170, 227, 1214, 1346
AsuC2I	CCSGG	3 cut(s)	589, 711, 879
AsuHPI	GGTGA	5 cut(s)	94, 326, 652, 766, 1219
AsuII	TTCGAA	1 cut(s)	914
AvaI	CYCGRG	1 cut(s)	1086
AvaII	GGWCC	2 cut(s)	1214, 1346
BanI	GGYRCC	1 cut(s)	706
BanII	GRGCYC	2 cut(s)	197, 217
BarI	GAAGNNNNNNTAC	2 cut(s)	774, 806
BauI	CACGAG	1 cut(s)	1284
BbsI	GAAGAC	1 cut(s)	515
Bbv12I	GWGCWC	1 cut(s)	197
BbvI	GCAGC	2 cut(s)	1231, 1349
BccI	CCATC	4 cut(s)	227, 600, 1310, 1374
BciT130I	CCWGG	2 cut(s)	136, 630
BclI	TGATCA	1 cut(s)	96
BcnI	CCSGG	3 cut(s)	589, 711, 879
BfaI	CTAG	3 cut(s)	71, 1055, 1449
BfmI	CTRYAG	1 cut(s)	1141
BglI	GCCNNNNNGGC	1 cut(s)	234
BisI	GCNGC	2 cut(s)	1245, 1338
BlsI	GCNGC	2 cut(s)	1246, 1339
Bme1390I	CCNGG	5 cut(s)	136, 589, 630, 711, 879
Bme18I	GGWCC	2 cut(s)	1214, 1346
BmeT110I	CYCGRG	1 cut(s)	1086
BmgT120I	GGNCC	4 cut(s)	170, 227, 1214, 1346
BmiI	GGNNCC	3 cut(s)	172, 216, 708
BmrFI	CCNGG	5 cut(s)	136, 589, 630, 711, 879
BmsI	GCATC	4 cut(s)	159, 802, 994, 1389
BpiI	GAAGAC	1 cut(s)	515
BpmI	CTGGAG	5 cut(s)	9, 118, 164, 651, 758
Bpu14I	TTCGAA	1 cut(s)	914
BpuMI	CCSGG	3 cut(s)	589, 711, 879
BsaBI	GATNNNNATC	1 cut(s)	1066
BsaJI	CCNNGG	5 cut(s)	588, 710, 878, 1042, 1290
BsaWI	WCCGGW	1 cut(s)	206
BsaXI	ACNNNNNCTCC	4 cut(s)	624, 645, 654, 675
Bsc4I	CCNNNNNNNGG	1 cut(s)	224
Bse118I	RCCGGY	1 cut(s)	206
Bse1I	ACTGG	2 cut(s)	181, 947
Bse3DI	GCAATG	2 cut(s)	409, 1443
Bse8I	GATNNNNATC	1 cut(s)	1066
BseBI	CCWGG	2 cut(s)	136, 630
BseDI	CCNNGG	5 cut(s)	588, 710, 878, 1042, 1290
BseGI	GGATG	3 cut(s)	357, 611, 1385
BseJI	GATNNNNATC	1 cut(s)	1066
BseLI	CCNNNNNNNGG	1 cut(s)	224
BseMI	GCAATG	2 cut(s)	409, 1443
BseMII	CTCAG	3 cut(s)	102, 1274, 1446
BseNI	ACTGG	2 cut(s)	181, 947
BseRI	GAGGAG	2 cut(s)	734, 1050
BseXI	GCAGC	2 cut(s)	1231, 1349
BseYI	CCCAGC	4 cut(s)	146, 827, 977, 1126
BshFI	GGCC	4 cut(s)	171, 228, 472, 685
BshNI	GGYRCC	1 cut(s)	706
BshTI	ACCGGT	1 cut(s)	206
BsiHKAI	GWGCWC	1 cut(s)	197
BsiHKCI	CYCGRG	1 cut(s)	1086
BsiSI	CCGG	6 cut(s)	207, 588, 686, 710, 878, 1197
BslFI	GGGAC	1 cut(s)	1109
BslI	CCNNNNNNNGG	1 cut(s)	224
BsmFI	GGGAC	1 cut(s)	1109
BsnI	GGCC	4 cut(s)	171, 228, 472, 685
BsoBI	CYCGRG	1 cut(s)	1086
Bsp119I	TTCGAA	1 cut(s)	914
Bsp1286I	GDGCHC	2 cut(s)	197, 217
Bsp143I	GATC	4 cut(s)	96, 259, 572, 1249
BspACI	CCGC	4 cut(s)	833, 1058, 1305, 1476
BspANI	GGCC	4 cut(s)	171, 228, 472, 685
BspCNI	CTCAG	3 cut(s)	101, 1273, 1447
BspLI	GGNNCC	3 cut(s)	172, 216, 708
BspPI	GGATC	1 cut(s)	580
BspT104I	TTCGAA	1 cut(s)	914
BspT107I	GGYRCC	1 cut(s)	706
BsrBI	CCGCTC	1 cut(s)	1476
BsrDI	GCAATG	2 cut(s)	409, 1443
BsrFI	RCCGGY	1 cut(s)	206
BsrI	ACTGG	2 cut(s)	181, 947
BssAI	RCCGGY	1 cut(s)	206
BssECI	CCNNGG	5 cut(s)	588, 710, 878, 1042, 1290
BssMI	GATC	4 cut(s)	96, 259, 572, 1249
BssSI	CACGAG	1 cut(s)	1284
BssT1I	CCWWGG	2 cut(s)	1042, 1290
Bst2BI	CACGAG	1 cut(s)	1284
Bst2UI	CCWGG	2 cut(s)	136, 630
Bst4CI	ACNGT	1 cut(s)	1300
Bst6I	CTCTTC	1 cut(s)	911
BstBI	TTCGAA	1 cut(s)	914
BstC8I	GCNNGC	1 cut(s)	1360
BstDEI	CTNAG	4 cut(s)	88, 794, 1260, 1455
BstF5I	GGATG	3 cut(s)	357, 611, 1385
BstHHI	GCGC	2 cut(s)	889, 1225
BstKTI	GATC	4 cut(s)	99, 262, 575, 1252
BstMBI	GATC	4 cut(s)	96, 259, 572, 1249
BstMWI	GCNNNNNNNGC	3 cut(s)	234, 893, 1244
BstNI	CCWGG	2 cut(s)	136, 630
BstNSI	RCATGY	2 cut(s)	311, 378
BstSCI	CCNGG	5 cut(s)	134, 587, 628, 709, 877
BstSFI	CTRYAG	1 cut(s)	1141
BstV1I	GCAGC	2 cut(s)	1231, 1349
BstV2I	GAAGAC	1 cut(s)	515
BsuRI	GGCC	4 cut(s)	171, 228, 472, 685
BtsCI	GGATG	3 cut(s)	357, 611, 1385
Cac8I	GCNNGC	1 cut(s)	1360
CfoI	GCGC	2 cut(s)	889, 1225
Cfr10I	RCCGGY	1 cut(s)	206
Cfr13I	GGNCC	4 cut(s)	170, 227, 1214, 1346
Csp6I	GTAC	3 cut(s)	421, 940, 1320
CspAI	ACCGGT	1 cut(s)	206
CviAII	CATG	2 cut(s)	308, 375
CviQI	GTAC	3 cut(s)	421, 940, 1320
DdeI	CTNAG	4 cut(s)	88, 794, 1260, 1455
DpnI	GATC	4 cut(s)	98, 261, 574, 1251
DpnII	GATC	4 cut(s)	96, 259, 572, 1249
Eam1104I	CTCTTC	1 cut(s)	911
EarI	CTCTTC	1 cut(s)	911
EciI	GGCGGA	1 cut(s)	848
Ecl136II	GAGCTC	1 cut(s)	195
Eco130I	CCWWGG	2 cut(s)	1042, 1290
Eco24I	GRGCYC	2 cut(s)	197, 217
Eco32I	GATATC	1 cut(s)	1068
Eco47I	GGWCC	2 cut(s)	1214, 1346
Eco53kI	GAGCTC	1 cut(s)	195
Eco88I	CYCGRG	1 cut(s)	1086
EcoICRI	GAGCTC	1 cut(s)	195
EcoRI	GAATTC	1 cut(s)	1050
EcoRII	CCWGG	2 cut(s)	134, 628
EcoRV	GATATC	1 cut(s)	1068
EcoT14I	CCWWGG	2 cut(s)	1042, 1290
EcoT38I	GRGCYC	2 cut(s)	197, 217
ErhI	CCWWGG	2 cut(s)	1042, 1290
FaeI	CATG	2 cut(s)	311, 378
FaqI	GGGAC	1 cut(s)	1109
FatI	CATG	2 cut(s)	307, 374
FauI	CCCGC	2 cut(s)	1051, 1469
FauNDI	CATATG	3 cut(s)	411, 1150, 1219
FbaI	TGATCA	1 cut(s)	96
Fnu4HI	GCNGC	2 cut(s)	1245, 1338
FokI	GGATG	3 cut(s)	364, 618, 1392
FriOI	GRGCYC	2 cut(s)	197, 217
Fsp4HI	GCNGC	2 cut(s)	1245, 1338
FspBI	CTAG	3 cut(s)	71, 1055, 1449
GlaI	GCGC	2 cut(s)	888, 1224
GluI	GCNGC	2 cut(s)	1245, 1338
GsaI	CCCAGC	4 cut(s)	150, 831, 981, 1130
GsuI	CTGGAG	5 cut(s)	9, 118, 164, 651, 758
HaeIII	GGCC	4 cut(s)	171, 228, 472, 685
HapII	CCGG	6 cut(s)	207, 588, 686, 710, 878, 1197
HhaI	GCGC	2 cut(s)	889, 1225
Hin1II	CATG	2 cut(s)	311, 378
Hin6I	GCGC	2 cut(s)	887, 1223
HinP1I	GCGC	2 cut(s)	887, 1223
HindIII	AAGCTT	1 cut(s)	1156
HinfI	GANTC	4 cut(s)	5, 733, 773, 1038
HpaII	CCGG	6 cut(s)	207, 588, 686, 710, 878, 1197
HphI	GGTGA	5 cut(s)	94, 326, 652, 766, 1219
Hpy166II	GTNNAC	1 cut(s)	545
Hpy188I	TCNGA	5 cut(s)	778, 1072, 1185, 1263, 1274
Hpy188III	TCNNGA	4 cut(s)	94, 157, 737, 1396
Hpy8I	GTNNAC	1 cut(s)	545
HpyAV	CCTTC	4 cut(s)	115, 133, 709, 760
HpyCH4III	ACNGT	1 cut(s)	1300
HpyCH4V	TGCA	8 cut(s)	266, 278, 302, 402, 409, 436, 985, 1106
HpyF10VI	GCNNNNNNNGC	3 cut(s)	234, 893, 1244
HpyF3I	CTNAG	4 cut(s)	88, 794, 1260, 1455
Hsp92II	CATG	2 cut(s)	311, 378
HspAI	GCGC	2 cut(s)	887, 1223
Ksp22I	TGATCA	1 cut(s)	96
Kzo9I	GATC	4 cut(s)	96, 259, 572, 1249
LmnI	GCTCC	3 cut(s)	28, 220, 1334
Lsp1109I	GCAGC	2 cut(s)	1231, 1349
LweI	GCATC	4 cut(s)	159, 802, 994, 1389
MaeI	CTAG	3 cut(s)	71, 1055, 1449
MaeIII	GTNAC	4 cut(s)	990, 1093, 1113, 1300
MalI	GATC	4 cut(s)	98, 261, 574, 1251
MbiI	CCGCTC	1 cut(s)	1476
MboI	GATC	4 cut(s)	96, 259, 572, 1249
MboII	GAAGA	5 cut(s)	31, 520, 665, 791, 898
MfeI	CAATTG	1 cut(s)	1101
MhlI	GDGCHC	2 cut(s)	197, 217
MluCI	AATT	8 cut(s)	17, 34, 187, 496, 1050, 1101, 1279, 1404
MlyI	GAGTC	1 cut(s)	1047
MmeI	TCCRAC	1 cut(s)	1312
MroXI	GAANNNNTTC	1 cut(s)	1012
MseI	TTAA	4 cut(s)	222, 744, 1268, 1461
MslI	CAYNNNNRTG	1 cut(s)	312
MspA1I	CMGCKG	2 cut(s)	971, 1238
MspI	CCGG	6 cut(s)	207, 588, 686, 710, 878, 1197
MspR9I	CCNGG	5 cut(s)	136, 589, 630, 711, 879
MunI	CAATTG	1 cut(s)	1101
MvaI	CCWGG	2 cut(s)	136, 630
MwoI	GCNNNNNNNGC	3 cut(s)	234, 893, 1244
NciI	CCSGG	3 cut(s)	589, 711, 879
NdeI	CATATG	3 cut(s)	411, 1150, 1219
NdeII	GATC	4 cut(s)	96, 259, 572, 1249
NlaIII	CATG	2 cut(s)	311, 378
NlaIV	GGNNCC	3 cut(s)	172, 216, 708
NmeAIII	GCCGAG	1 cut(s)	1233
NmuCI	GTSAC	1 cut(s)	990
NspI	RCATGY	2 cut(s)	311, 378
NspV	TTCGAA	1 cut(s)	914
PciI	ACATGT	1 cut(s)	374
PdmI	GAANNNNTTC	1 cut(s)	1012
PfeI	GAWTC	3 cut(s)	5, 733, 773
PfoI	TCCNGGA	1 cut(s)	134
PinAI	ACCGGT	1 cut(s)	206
PkrI	GCNGC	2 cut(s)	1246, 1339
PleI	GAGTC	1 cut(s)	1046
PpsI	GAGTC	1 cut(s)	1046
PscI	ACATGT	1 cut(s)	374
Psp124BI	GAGCTC	1 cut(s)	197
Psp6I	CCWGG	2 cut(s)	134, 628
PspFI	CCCAGC	4 cut(s)	146, 827, 977, 1126
PspGI	CCWGG	2 cut(s)	134, 628
PspN4I	GGNNCC	3 cut(s)	172, 216, 708
PspPI	GGNCC	4 cut(s)	170, 227, 1214, 1346
PvuII	CAGCTG	2 cut(s)	971, 1238
RsaI	GTAC	3 cut(s)	422, 941, 1321
RsaNI	GTAC	3 cut(s)	421, 940, 1320
RseI	CAYNNNNRTG	1 cut(s)	312
SacI	GAGCTC	1 cut(s)	197
SaqAI	TTAA	4 cut(s)	222, 744, 1268, 1461
SatI	GCNGC	2 cut(s)	1245, 1338
Sau3AI	GATC	4 cut(s)	96, 259, 572, 1249
Sau96I	GGNCC	4 cut(s)	170, 227, 1214, 1346
SchI	GAGTC	1 cut(s)	1047
ScrFI	CCNGG	5 cut(s)	136, 589, 630, 711, 879
SduI	GDGCHC	2 cut(s)	197, 217
SfaNI	GCATC	4 cut(s)	159, 802, 994, 1389
SfcI	CTRYAG	1 cut(s)	1141
SfuI	TTCGAA	1 cut(s)	914
SinI	GGWCC	2 cut(s)	1214, 1346
SmiMI	CAYNNNNRTG	1 cut(s)	312
Sse9I	AATT	8 cut(s)	17, 34, 187, 496, 1050, 1101, 1279, 1404
SsiI	CCGC	4 cut(s)	833, 1058, 1305, 1476
SspI	AATATT	1 cut(s)	1023
SspMI	CTAG	3 cut(s)	71, 1055, 1449
SstI	GAGCTC	1 cut(s)	197
StyD4I	CCNGG	5 cut(s)	134, 587, 628, 709, 877
StyI	CCWWGG	2 cut(s)	1042, 1290
TaaI	ACNGT	1 cut(s)	1300
TaqI	TCGA	4 cut(s)	191, 201, 914, 1026
TasI	AATT	8 cut(s)	17, 34, 187, 496, 1050, 1101, 1279, 1404
TatI	WGTACW	1 cut(s)	939
TfiI	GAWTC	3 cut(s)	5, 733, 773
Tru1I	TTAA	4 cut(s)	222, 744, 1268, 1461
Tru9I	TTAA	4 cut(s)	222, 744, 1268, 1461
TseFI	GTSAC	1 cut(s)	990
TseI	GCWGC	2 cut(s)	1244, 1337
Tsp45I	GTSAC	1 cut(s)	990
TspDTI	ATGAA	1 cut(s)	746
TspGWI	ACGGA	1 cut(s)	618
VpaK11BI	GGWCC	2 cut(s)	1214, 1346
XapI	RAATTY	1 cut(s)	1050
XceI	RCATGY	2 cut(s)	311, 378
XmnI	GAANNNNTTC	1 cut(s)	1012
XspI	CTAG	3 cut(s)	71, 1055, 1449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.