Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001726

Physical Location & Seq

Genomic Coordinates Reverse (-)

55824705 .. 55825476

Gene Structure 772 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00261580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGTCGTCGGGTCATGGTGGAAATGCGCTCGACGAGGCAGAACGGAACGTAATCGTAGACTTGGGCGTGTATTTCAATTTCTTCCCGACCCTAAAACCCCCAAACAAAACCCTAGCTTTCCACCAAATCTCGGTCCTAATCACCACCTTCCTCGCCTACGCTTCCTTCCACGCCTCCGGAAAGCCCCCGGCATTGTCAAGAGCGTTCTTGAGCCCAAACTCCAGTCCAATTTGAGCTCATTCGACACCGGGTGGGCTCCCTTTAATGGGCCTCGGGGCACCCACAAGCTCGGAGAACTTGATCTTGCATTTCGTCCGCATATTCTATTGGGATGTATTTTGCGGGGCATGTTGGTTGTTTCTTGCTTATGGGATGTTGGGGAGTGGAGTTTTGACTTGTCCTTTCGGGTTAGGTTATTGGTGCAATGTGCATATGTTGCGGTATTTTGTGGGTGTGCAAGTTGTGTGTGGGTTGTTTCGGTCGATAGGTTGGCCTTGTGTTGTGGCGGTTGTGGGGAATTGGTTTGGGAAGATGAAGCGGGGGTTGATAATGGGGTGTGGAGTTCACATACCTCGGTTGGGAACATTGTTGGATCGGTTATTGCTTCGGGCTTTTGTGCCACTTTGTTTTTGATACGCATTGCCGGAACCGAGATTAAAGAGAAGTTGAGTGGGAAAAGATGGTTTTGGTATAGCATAGACACACGAGAATTGAGAAGTAAAAGGCGAAATTGTTGTATGGTTACGGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0042592 GO:0048878 GO:0050801 GO:0055062 GO:0055081 GO:0055083 GO:0065007 GO:0065008 GO:0072505 GO:0072506 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1

Protein Analysis

250

Amino Acids

28.06

Weight (kDa)

9.58

Isoelectric Point (pI)

42.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001726)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13100 AT2G13100 AT2G13100 AT2G13100
fragaria_vesca	FvH4_1g01800
malus_domestica	MD02G1013700.v1.1 MD02G1014100.v1.1 MD04G1051200.v1.1 MD15G1160500.v1.1
prunus_persica	Prupe.7G255700_v2.0.a1 Prupe.7G255700_v2.0.a1
pyrus_communis	pycom02g01270 pycom04g04510 pycom15g14430
rosa_chinensis	RchiOBHm_Chr2g0086771 RchiOBHm_Chr4g0393381 RchiOBHm_Chr4g0439391 RchiOBHm_Chr7g0234391
rosa_laevigata	RLG00000015790 RLG00000017046 RLG00000032265 RLG00000033393
rosa_multiflora	Rmu_sc0001981.1_g000056 Rmu_sc0003226.1_g000089 Rmu_sc0005498.1_g000004 Rmu_sc0034546.1_g000001
rosa_roxburghii	Rroxscaffold_2G00154210 Rroxscaffold_3G00261580
rosa_rugosa	Rorug01G0469200 Rorug05G0053100 Rorug05G0053200 Rorug05G0053300
rosa_samantha	Rh1BG358100 Rh2AG021700 Rh2BG021700 Rh2CG022500 Rh2CG022600 Rh2DG022300 Rh3AG088200 Rh4BG042700 Rh5BG362500 Rh6AG178900 Rh6DG482900 Rh7BG011800
rosa_wichuraiana	Rw2G001740 Rw3G005830 Rw5G029340 Rw6G019570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	278
AccI	GTMKAC	1 cut(s)	58
AccIII	TCCGGA	1 cut(s)	177
AciI	CCGC	5 cut(s)	317, 343, 440, 507, 539
AclWI	GGATC	1 cut(s)	601
AdeI	CACNNNGTG	1 cut(s)	252
AfiI	CCNNNNNNNGG	4 cut(s)	131, 266, 267, 579
AgsI	TTSAA	1 cut(s)	77
AluBI	AGCT	3 cut(s)	117, 237, 289
AluI	AGCT	3 cut(s)	117, 237, 289
Alw21I	GWGCWC	1 cut(s)	239
AlwI	GGATC	1 cut(s)	601
Ama87I	CYCGRG	1 cut(s)	273
Aor13HI	TCCGGA	1 cut(s)	177
AoxI	GGCC	2 cut(s)	269, 492
AspLEI	GCGC	1 cut(s)	29
AspS9I	GGNCC	2 cut(s)	134, 269
AsuC2I	CCSGG	2 cut(s)	189, 250
AsuHPI	GGTGA	1 cut(s)	134
AvaI	CYCGRG	1 cut(s)	273
AvaII	GGWCC	1 cut(s)	134
BaeGI	GKGCMC	1 cut(s)	281
BanI	GGYRCC	1 cut(s)	278
BanII	GRGCYC	3 cut(s)	216, 239, 259
BauI	CACGAG	1 cut(s)	705
Bbv12I	GWGCWC	1 cut(s)	239
BccI	CCATC	1 cut(s)	675
BcnI	CCSGG	2 cut(s)	189, 250
BfaI	CTAG	1 cut(s)	114
Bme1390I	CCNGG	2 cut(s)	189, 250
Bme18I	GGWCC	1 cut(s)	134
BmeT110I	CYCGRG	1 cut(s)	273
BmgT120I	GGNCC	2 cut(s)	134, 269
BmiI	GGNNCC	3 cut(s)	258, 280, 649
BmrFI	CCNGG	2 cut(s)	189, 250
BpmI	CTGGAG	1 cut(s)	206
BpuEI	CTTGAG	1 cut(s)	230
BpuMI	CCSGG	2 cut(s)	189, 250
BsaJI	CCNNGG	3 cut(s)	187, 272, 573
BsaWI	WCCGGW	1 cut(s)	177
Bsc4I	CCNNNNNNNGG	4 cut(s)	131, 266, 267, 579
Bse1I	ACTGG	1 cut(s)	223
Bse3DI	GCAATG	2 cut(s)	431, 639
BseAI	TCCGGA	1 cut(s)	177
BseDI	CCNNGG	3 cut(s)	187, 272, 573
BseGI	GGATG	2 cut(s)	338, 379
BseLI	CCNNNNNNNGG	4 cut(s)	131, 266, 267, 579
BseMI	GCAATG	2 cut(s)	431, 639
BseNI	ACTGG	1 cut(s)	223
BseSI	GKGCMC	1 cut(s)	281
Bsh1285I	CGRYCG	1 cut(s)	483
BshFI	GGCC	2 cut(s)	271, 494
BshNI	GGYRCC	1 cut(s)	278
BsiEI	CGRYCG	1 cut(s)	483
BsiHKAI	GWGCWC	1 cut(s)	239
BsiHKCI	CYCGRG	1 cut(s)	273
BsiSI	CCGG	4 cut(s)	178, 189, 249, 645
BslI	CCNNNNNNNGG	4 cut(s)	131, 266, 267, 579
BsnI	GGCC	2 cut(s)	271, 494
BsoBI	CYCGRG	1 cut(s)	273
Bsp1286I	GDGCHC	4 cut(s)	216, 239, 259, 281
Bsp13I	TCCGGA	1 cut(s)	177
Bsp143I	GATC	2 cut(s)	301, 593
BspACI	CCGC	5 cut(s)	317, 343, 440, 507, 539
BspANI	GGCC	2 cut(s)	271, 494
BspEI	TCCGGA	1 cut(s)	177
BspLI	GGNNCC	3 cut(s)	258, 280, 649
BspPI	GGATC	1 cut(s)	601
BspT107I	GGYRCC	1 cut(s)	278
BsrDI	GCAATG	2 cut(s)	431, 639
BsrI	ACTGG	1 cut(s)	223
BssECI	CCNNGG	3 cut(s)	187, 272, 573
BssMI	GATC	2 cut(s)	301, 593
BssSI	CACGAG	1 cut(s)	705
Bst2BI	CACGAG	1 cut(s)	705
Bst4CI	ACNGT	1 cut(s)	748
BstAPI	GCANNNNNTGC	1 cut(s)	437
BstF5I	GGATG	2 cut(s)	338, 379
BstHHI	GCGC	1 cut(s)	29
BstKTI	GATC	2 cut(s)	304, 596
BstMBI	GATC	2 cut(s)	301, 593
BstMCI	CGRYCG	1 cut(s)	483
BstMWI	GCNNNNNNNGC	1 cut(s)	437
BstNSI	RCATGY	1 cut(s)	352
BstSCI	CCNGG	2 cut(s)	187, 248
BstSLI	GKGCMC	1 cut(s)	281
BsuRI	GGCC	2 cut(s)	271, 494
BtsCI	GGATG	2 cut(s)	338, 379
CfoI	GCGC	1 cut(s)	29
Cfr13I	GGNCC	2 cut(s)	134, 269
CviAII	CATG	2 cut(s)	15, 349
CviJI	RGCY	9 cut(s)	117, 185, 214, 237, 257, 271, 289, 494, 612
CviKI_1	RGCY	9 cut(s)	117, 185, 214, 237, 257, 271, 289, 494, 612
DpnI	GATC	2 cut(s)	303, 595
DpnII	GATC	2 cut(s)	301, 593
DraIII	CACNNNGTG	1 cut(s)	252
Ecl136II	GAGCTC	1 cut(s)	237
Eco24I	GRGCYC	3 cut(s)	216, 239, 259
Eco47I	GGWCC	1 cut(s)	134
Eco53kI	GAGCTC	1 cut(s)	237
Eco88I	CYCGRG	1 cut(s)	273
EcoICRI	GAGCTC	1 cut(s)	237
EcoT38I	GRGCYC	3 cut(s)	216, 239, 259
FaeI	CATG	2 cut(s)	18, 352
FatI	CATG	2 cut(s)	14, 348
FauI	CCCGC	2 cut(s)	336, 532
FauNDI	CATATG	1 cut(s)	433
FblI	GTMKAC	1 cut(s)	58
FokI	GGATG	2 cut(s)	345, 386
FriOI	GRGCYC	3 cut(s)	216, 239, 259
FspBI	CTAG	1 cut(s)	114
GlaI	GCGC	1 cut(s)	28
GsuI	CTGGAG	1 cut(s)	206
HaeIII	GGCC	2 cut(s)	271, 494
HapII	CCGG	4 cut(s)	178, 189, 249, 645
HhaI	GCGC	1 cut(s)	29
Hin1II	CATG	2 cut(s)	18, 352
Hin6I	GCGC	1 cut(s)	27
HinP1I	GCGC	1 cut(s)	27
HpaII	CCGG	4 cut(s)	178, 189, 249, 645
HphI	GGTGA	1 cut(s)	134
Hpy166II	GTNNAC	2 cut(s)	59, 566
Hpy188I	TCNGA	1 cut(s)	293
Hpy188III	TCNNGA	4 cut(s)	86, 178, 199, 209
Hpy8I	GTNNAC	2 cut(s)	59, 566
Hpy99I	CGWCG	2 cut(s)	11, 36
HpyAV	CCTTC	2 cut(s)	158, 176
HpyCH4III	ACNGT	1 cut(s)	748
HpyCH4IV	ACGT	1 cut(s)	49
HpyCH4V	TGCA	4 cut(s)	308, 424, 431, 458
HpyF10VI	GCNNNNNNNGC	1 cut(s)	437
HpySE526I	ACGT	1 cut(s)	49
Hsp92II	CATG	2 cut(s)	18, 352
HspAI	GCGC	1 cut(s)	27
Kpn2I	TCCGGA	1 cut(s)	177
Kzo9I	GATC	2 cut(s)	301, 593
LmnI	GCTCC	1 cut(s)	262
LpnPI	CCDG	5 cut(s)	191, 202, 236, 262, 658
MaeI	CTAG	1 cut(s)	114
MaeII	ACGT	1 cut(s)	49
MaeIII	GTNAC	1 cut(s)	742
MalI	GATC	2 cut(s)	303, 595
MboI	GATC	2 cut(s)	301, 593
MboII	GAAGA	2 cut(s)	74, 542
MhlI	GDGCHC	4 cut(s)	216, 239, 259, 281
MluCI	AATT	5 cut(s)	77, 229, 518, 710, 730
MmeI	TCCRAC	1 cut(s)	571
MnlI	CCTC	5 cut(s)	29, 162, 185, 282, 583
MroI	TCCGGA	1 cut(s)	177
MseI	TTAA	2 cut(s)	264, 657
MspI	CCGG	4 cut(s)	178, 189, 249, 645
MspR9I	CCNGG	2 cut(s)	189, 250
MwoI	GCNNNNNNNGC	1 cut(s)	437
NciI	CCSGG	2 cut(s)	189, 250
NdeI	CATATG	1 cut(s)	433
NdeII	GATC	2 cut(s)	301, 593
NlaIII	CATG	2 cut(s)	18, 352
NlaIV	GGNNCC	3 cut(s)	258, 280, 649
NspI	RCATGY	1 cut(s)	352
Psp124BI	GAGCTC	1 cut(s)	239
PspN4I	GGNNCC	3 cut(s)	258, 280, 649
PspPI	GGNCC	2 cut(s)	134, 269
SacI	GAGCTC	1 cut(s)	239
SaqAI	TTAA	2 cut(s)	264, 657
Sau3AI	GATC	2 cut(s)	301, 593
Sau96I	GGNCC	2 cut(s)	134, 269
ScrFI	CCNGG	2 cut(s)	189, 250
SduI	GDGCHC	4 cut(s)	216, 239, 259, 281
SetI	ASST	8 cut(s)	52, 119, 150, 239, 291, 416, 491, 575
SinI	GGWCC	1 cut(s)	134
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
Sse9I	AATT	5 cut(s)	77, 229, 518, 710, 730
SsiI	CCGC	5 cut(s)	317, 343, 440, 507, 539
SspMI	CTAG	1 cut(s)	114
SstI	GAGCTC	1 cut(s)	239
StyD4I	CCNGG	2 cut(s)	187, 248
TaaI	ACNGT	1 cut(s)	748
TaiI	ACGT	1 cut(s)	52
TaqI	TCGA	3 cut(s)	31, 243, 483
TaqII	GACCGA	2 cut(s)	122, 469
TasI	AATT	5 cut(s)	77, 229, 518, 710, 730
Tru1I	TTAA	2 cut(s)	264, 657
Tru9I	TTAA	2 cut(s)	264, 657
TspDTI	ATGAA	1 cut(s)	549
TspGWI	ACGGA	1 cut(s)	59
VpaK11BI	GGWCC	1 cut(s)	134
XceI	RCATGY	1 cut(s)	352
XmiI	GTMKAC	1 cut(s)	58
XspI	CTAG	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.