Rw3G005830

glycerol-3-phosphate transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0001726
Physical Location & Seq
Reverse (-)
5188081 .. 5190049
1969 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G005830.1

Sequence Viewer

Length: 645 bp
ATGGTGGAAGTACTGCTTGACGGGAACCAGAACAGGAAGGTAATCGTAGACTTGGGCGTGTATTTCAATTTCTTCCCAACCCTAAAACCCCCAAACAAAACCCTAACTTTCCACCAAATCTCAGTCCTAATCATCACCTTCCTCGCCTACGCTTCCTTCCACGCCTCCAGAAAGCCCCCCAGCATTGTCAAGAGCGTTCTTGAGCCCAAACTCCAGTCCAATTCGAGCTTATTCGACACCGGGCTCGGAGAACTTGATCTTGCATTTCTGTCTGCATATTCTATTGGGATGTATTTTGCAGGGCATGTTGGTGAGAGGATTGATTTGAGGTTGTTTCTTGCTTATGGGATGTTGGGGAGTGGAGTTTTGACTTGTCTTTTCGGGTTAGGTTATTGGTGCAATGTGCATATGTTGCGGTATTTTGTGGGTGTGCAAGTTGTGTGTGGGTTGTTTCAGTCGATAGGTTGGCCTTGTGTTGTGGCAGTTGTGGGGAATTGGTTTAGGAAGACGAAGCGGGGGTTGATAATGGGGGTGTGGAGTTCACATACCTCGGTTGGGAACATTGTTGGATCACTCACATTGTTATCCAAACAGATCTTAGCAACTTCTTTTCTAGCAGAGAAGCTGAATCCCCTCCTCATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0042592 GO:0048878 GO:0050801 GO:0055062 GO:0055081 GO:0055083 GO:0065007 GO:0065008 GO:0072505 GO:0072506 GO:0098771
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MFS_1

Protein Analysis

214

Amino Acids

23.63

Weight (kDa)

9.36

Isoelectric Point (pI)

21.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 75 - 192 1.1e-18 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 48
AciI CCGC 2 cut(s) 415, 514
AclWI GGATC 1 cut(s) 577
AfaI GTAC 1 cut(s) 12
AfiI CCNNNNNNNGG 1 cut(s) 555
AgsI TTSAA 1 cut(s) 67
AluBI AGCT 2 cut(s) 228, 625
AluI AGCT 2 cut(s) 228, 625
AlwI GGATC 1 cut(s) 577
AoxI GGCC 1 cut(s) 467
AsuC2I CCSGG 1 cut(s) 241
AsuHPI GGTGA 2 cut(s) 127, 323
BanII GRGCYC 2 cut(s) 207, 246
BbsI GAAGAC 1 cut(s) 512
BcnI CCSGG 1 cut(s) 241
BfaI CTAG 1 cut(s) 614
BglII AGATCT 1 cut(s) 594
BmcAI AGTACT 1 cut(s) 12
Bme1390I CCNGG 1 cut(s) 241
BmiI GGNNCC 1 cut(s) 26
BmrFI CCNGG 1 cut(s) 241
BpiI GAAGAC 1 cut(s) 512
BpmI CTGGAG 2 cut(s) 151, 197
BpuEI CTTGAG 1 cut(s) 221
BpuMI CCSGG 1 cut(s) 241
BsaJI CCNNGG 1 cut(s) 549
Bsc4I CCNNNNNNNGG 1 cut(s) 555
Bse1I ACTGG 1 cut(s) 214
Bse3DI GCAATG 1 cut(s) 406
BseDI CCNNGG 1 cut(s) 549
BseGI GGATG 2 cut(s) 294, 354
BseLI CCNNNNNNNGG 1 cut(s) 555
BseMI GCAATG 1 cut(s) 406
BseMII CTCAG 1 cut(s) 135
BseNI ACTGG 1 cut(s) 214
BseRI GAGGAG 1 cut(s) 626
BseYI CCCAGC 1 cut(s) 179
BshFI GGCC 1 cut(s) 469
BsiSI CCGG 1 cut(s) 240
BslI CCNNNNNNNGG 1 cut(s) 555
BsnI GGCC 1 cut(s) 469
Bsp1286I GDGCHC 2 cut(s) 207, 246
Bsp143I GATC 3 cut(s) 256, 569, 594
BspACI CCGC 2 cut(s) 415, 514
BspANI GGCC 1 cut(s) 469
BspCNI CTCAG 1 cut(s) 134
BspLI GGNNCC 1 cut(s) 26
BspPI GGATC 1 cut(s) 577
BsrDI GCAATG 1 cut(s) 406
BsrI ACTGG 1 cut(s) 214
BssECI CCNNGG 1 cut(s) 549
BssMI GATC 3 cut(s) 256, 569, 594
BstAPI GCANNNNNTGC 1 cut(s) 412
BstDEI CTNAG 2 cut(s) 121, 598
BstF5I GGATG 2 cut(s) 294, 354
BstKTI GATC 3 cut(s) 259, 572, 597
BstMBI GATC 3 cut(s) 256, 569, 594
BstMWI GCNNNNNNNGC 1 cut(s) 412
BstNSI RCATGY 1 cut(s) 308
BstSCI CCNGG 1 cut(s) 239
BstV2I GAAGAC 1 cut(s) 512
BstX2I RGATCY 1 cut(s) 594
BstYI RGATCY 1 cut(s) 594
BsuRI GGCC 1 cut(s) 469
BtsCI GGATG 2 cut(s) 294, 354
Csp6I GTAC 1 cut(s) 11
CviAII CATG 1 cut(s) 305
CviJI RGCY 6 cut(s) 175, 205, 228, 244, 469, 625
CviKI_1 RGCY 6 cut(s) 175, 205, 228, 244, 469, 625
CviQI GTAC 1 cut(s) 11
DdeI CTNAG 2 cut(s) 121, 598
DpnI GATC 3 cut(s) 258, 571, 596
DpnII GATC 3 cut(s) 256, 569, 594
Eco24I GRGCYC 2 cut(s) 207, 246
EcoT38I GRGCYC 2 cut(s) 207, 246
FaeI CATG 1 cut(s) 308
FaiI YATR 8 cut(s) 277, 306, 345, 408, 410, 546, 641, 643
FalI AAGNNNNNCTT 1 cut(s) 32
FatI CATG 1 cut(s) 304
FauI CCCGC 1 cut(s) 507
FauNDI CATATG 1 cut(s) 408
FblI GTMKAC 1 cut(s) 48
FokI GGATG 2 cut(s) 301, 361
FriOI GRGCYC 2 cut(s) 207, 246
FspBI CTAG 1 cut(s) 614
GsaI CCCAGC 1 cut(s) 183
GsuI CTGGAG 2 cut(s) 151, 197
HaeIII GGCC 1 cut(s) 469
HapII CCGG 1 cut(s) 240
Hin1II CATG 1 cut(s) 308
HinfI GANTC 1 cut(s) 628
HpaII CCGG 1 cut(s) 240
HphI GGTGA 2 cut(s) 127, 323
Hpy166II GTNNAC 2 cut(s) 49, 542
Hpy188I TCNGA 1 cut(s) 248
Hpy188III TCNNGA 3 cut(s) 168, 190, 200
Hpy8I GTNNAC 2 cut(s) 49, 542
HpyAV CCTTC 3 cut(s) 31, 148, 166
HpyCH4V TGCA 6 cut(s) 263, 275, 299, 399, 406, 433
HpyF10VI GCNNNNNNNGC 1 cut(s) 412
HpyF3I CTNAG 2 cut(s) 121, 598
Hsp92II CATG 1 cut(s) 308
Kzo9I GATC 3 cut(s) 256, 569, 594
LpnPI CCDG 7 cut(s) 19, 41, 181, 193, 227, 253, 285
MaeI CTAG 1 cut(s) 614
MalI GATC 3 cut(s) 258, 571, 596
MboI GATC 3 cut(s) 256, 569, 594
MboII GAAGA 2 cut(s) 64, 517
MflI RGATCY 1 cut(s) 594
MhlI GDGCHC 2 cut(s) 207, 246
MluCI AATT 3 cut(s) 67, 220, 493
MmeI TCCRAC 1 cut(s) 547
MnlI CCTC 6 cut(s) 152, 175, 309, 321, 559, 644
MslI CAYNNNNRTG 1 cut(s) 309
MspI CCGG 1 cut(s) 240
MspR9I CCNGG 1 cut(s) 241
MwoI GCNNNNNNNGC 1 cut(s) 412
NciI CCSGG 1 cut(s) 241
NdeI CATATG 1 cut(s) 408
NdeII GATC 3 cut(s) 256, 569, 594
NlaIII CATG 1 cut(s) 308
NlaIV GGNNCC 1 cut(s) 26
NspI RCATGY 1 cut(s) 308
PfeI GAWTC 1 cut(s) 628
PspFI CCCAGC 1 cut(s) 179
PspN4I GGNNCC 1 cut(s) 26
PsuI RGATCY 1 cut(s) 594
RsaI GTAC 1 cut(s) 12
RsaNI GTAC 1 cut(s) 11
RseI CAYNNNNRTG 1 cut(s) 309
Sau3AI GATC 3 cut(s) 256, 569, 594
ScaI AGTACT 1 cut(s) 12
ScrFI CCNGG 1 cut(s) 241
SduI GDGCHC 2 cut(s) 207, 246
SetI ASST 8 cut(s) 42, 140, 230, 332, 391, 466, 551, 627
SmiMI CAYNNNNRTG 1 cut(s) 309
SmlI CTYRAG 1 cut(s) 200
SmoI CTYRAG 1 cut(s) 200
Sse9I AATT 3 cut(s) 67, 220, 493
SsiI CCGC 2 cut(s) 415, 514
SspMI CTAG 1 cut(s) 614
StyD4I CCNGG 1 cut(s) 239
TaqI TCGA 3 cut(s) 224, 234, 458
TasI AATT 3 cut(s) 67, 220, 493
TatI WGTACW 1 cut(s) 10
TfiI GAWTC 1 cut(s) 628
XceI RCATGY 1 cut(s) 308
XmiI GTMKAC 1 cut(s) 48
XspI CTAG 1 cut(s) 614
ZrmI AGTACT 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.