Rh5BG362500
WRKY Family

WRKY transcription factor

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Reverse (-)
56700159 .. 56725076
24918 bp
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UTR
Exon/CDS
Intron
Rh5BG362500.1

Sequence Viewer

Length: 202 bp
ATGGTTATTACACCACGCATGAGGCTAATAAGGGAGGAGGTTTTCCAAGTTGGTTGGAAGGAGGAAGTTGGGACGAGTCTGAAAGAATTGTCTGATATCTCACATTCGGAACAAAGATCCCAACCATCTTCATTGACTGTCGACAAGCCTAATGATGACGGTTACAATTGGCGGAAATATGGGCAGAAGCAGGTGAAGGGGG

Protein Analysis

67

Amino Acids

7.79

Weight (kDa)

8.06

Isoelectric Point (pI)

28.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 181
Acc36I ACCTGC 1 cut(s) 181
AccI GTMKAC 1 cut(s) 141
AciI CCGC 1 cut(s) 172
AclWI GGATC 1 cut(s) 111
AlwI GGATC 1 cut(s) 111
BccI CCATC 1 cut(s) 133
BfuAI ACCTGC 1 cut(s) 181
BseRI GAGGAG 1 cut(s) 50
BslFI GGGAC 1 cut(s) 85
BsmFI GGGAC 1 cut(s) 85
Bsp143I GATC 1 cut(s) 116
BspACI CCGC 1 cut(s) 172
BspMI ACCTGC 1 cut(s) 181
BspPI GGATC 1 cut(s) 111
BssMI GATC 1 cut(s) 116
Bst4CI ACNGT 2 cut(s) 139, 161
BstKTI GATC 1 cut(s) 119
BstMBI GATC 1 cut(s) 116
BstX2I RGATCY 1 cut(s) 116
BstYI RGATCY 1 cut(s) 116
BveI ACCTGC 1 cut(s) 181
CviAII CATG 1 cut(s) 19
CviJI RGCY 2 cut(s) 25, 148
CviKI_1 RGCY 2 cut(s) 25, 148
DpnI GATC 1 cut(s) 118
DpnII GATC 1 cut(s) 116
EciI GGCGGA 1 cut(s) 187
Eco32I GATATC 1 cut(s) 97
EcoRV GATATC 1 cut(s) 97
FaeI CATG 1 cut(s) 22
FaiI YATR 2 cut(s) 20, 180
FaqI GGGAC 1 cut(s) 85
FatI CATG 1 cut(s) 18
FblI GTMKAC 1 cut(s) 141
Hin1II CATG 1 cut(s) 22
HincII GTYRAC 1 cut(s) 142
HindII GTYRAC 1 cut(s) 142
HinfI GANTC 1 cut(s) 76
Hpy166II GTNNAC 1 cut(s) 142
Hpy188I TCNGA 3 cut(s) 81, 94, 109
Hpy8I GTNNAC 1 cut(s) 142
HpyAV CCTTC 2 cut(s) 52, 190
HpyCH4III ACNGT 2 cut(s) 139, 161
Hsp92II CATG 1 cut(s) 22
Kzo9I GATC 1 cut(s) 116
LpnPI CCDG 1 cut(s) 176
MaeIII GTNAC 1 cut(s) 161
MalI GATC 1 cut(s) 118
MboI GATC 1 cut(s) 116
MboII GAAGA 1 cut(s) 120
MfeI CAATTG 1 cut(s) 166
MflI RGATCY 1 cut(s) 116
MluCI AATT 2 cut(s) 86, 166
MlyI GAGTC 1 cut(s) 85
MmeI TCCRAC 1 cut(s) 35
MnlI CCTC 4 cut(s) 15, 28, 31, 55
MunI CAATTG 1 cut(s) 166
NdeII GATC 1 cut(s) 116
NlaIII CATG 1 cut(s) 22
PaqCI CACCTGC 1 cut(s) 181
PleI GAGTC 1 cut(s) 84
PpsI GAGTC 1 cut(s) 84
PsuI RGATCY 1 cut(s) 116
SalI GTCGAC 1 cut(s) 140
Sau3AI GATC 1 cut(s) 116
SchI GAGTC 1 cut(s) 85
SetI ASST 2 cut(s) 42, 195
SgeI CNNG 5 cut(s) 27, 31, 59, 87, 157
Sse9I AATT 2 cut(s) 86, 166
SsiI CCGC 1 cut(s) 172
TaaI ACNGT 2 cut(s) 139, 161
TaqI TCGA 1 cut(s) 141
TasI AATT 2 cut(s) 86, 166
TspDTI ATGAA 1 cut(s) 120
XmiI GTMKAC 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.