Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003226.1

Orthogroup ID

OG0001726

Physical Location & Seq

Genomic Coordinates Forward (+)

310780 .. 312092

Gene Structure 1313 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003226.1_g000089.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

atggtggaagccgtcggagctgaagaagcctgtgtcacggtcatggtggaagtactgctcgacgggaaccggaataggaatggaggaggttttccaagttggttggaaggaggaaattggactattttagcttcttgttgtcttggcaggagactgatggtgtggaatcttagcaggggttcacaaaggagttctgctggattggtgaatccagacgagctccaactgagttctgctgagaagaagttgataagtgcttataatgataaaccagtgctttcgcgccctcaacacaatttcttcagggggcctaattactttgaaattgatctagacatacacaggttcagctacatctccaggaaagggcttgaatcattcagagacagattgaagaatggggtacttcatgtgggattaacaatccaggcacaaaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1336

Protein Analysis

146

Amino Acids

16.32

Weight (kDa)

8.91

Isoelectric Point (pI)

40.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001726)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13100 AT2G13100 AT2G13100 AT2G13100
fragaria_vesca	FvH4_1g01800
malus_domestica	MD02G1013700.v1.1 MD02G1014100.v1.1 MD04G1051200.v1.1 MD15G1160500.v1.1
prunus_persica	Prupe.7G255700_v2.0.a1 Prupe.7G255700_v2.0.a1
pyrus_communis	pycom02g01270 pycom04g04510 pycom15g14430
rosa_chinensis	RchiOBHm_Chr2g0086771 RchiOBHm_Chr4g0393381 RchiOBHm_Chr4g0439391 RchiOBHm_Chr7g0234391
rosa_laevigata	RLG00000015790 RLG00000017046 RLG00000032265 RLG00000033393
rosa_multiflora	Rmu_sc0001981.1_g000056 Rmu_sc0003226.1_g000089 Rmu_sc0005498.1_g000004 Rmu_sc0034546.1_g000001
rosa_roxburghii	Rroxscaffold_2G00154210 Rroxscaffold_3G00261580
rosa_rugosa	Rorug01G0469200 Rorug05G0053100 Rorug05G0053200 Rorug05G0053300
rosa_samantha	Rh1BG358100 Rh2AG021700 Rh2BG021700 Rh2CG022500 Rh2CG022600 Rh2DG022300 Rh3AG088200 Rh4BG042700 Rh5BG362500 Rh6AG178900 Rh6DG482900 Rh7BG011800
rosa_wichuraiana	Rw2G001740 Rw3G005830 Rw5G029340 Rw6G019570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	261
AccII	CGCG	1 cut(s)	283
AcuI	CTGAAG	2 cut(s)	42, 286
AfaI	GTAC	2 cut(s)	54, 405
AfiI	CCNNNNNNNGG	1 cut(s)	366
AgsI	TTSAA	3 cut(s)	323, 374, 394
AjnI	CCWGG	2 cut(s)	359, 426
AluBI	AGCT	4 cut(s)	20, 131, 220, 351
AluI	AGCT	4 cut(s)	20, 131, 220, 351
Alw21I	GWGCWC	1 cut(s)	222
Alw26I	GTCTC	2 cut(s)	145, 378
AoxI	GGCC	1 cut(s)	308
AspLEI	GCGC	1 cut(s)	285
AspS9I	GGNCC	1 cut(s)	308
AsuHPI	GGTGA	1 cut(s)	217
BanII	GRGCYC	1 cut(s)	222
Bbv12I	GWGCWC	1 cut(s)	222
BccI	CCATC	1 cut(s)	151
BciT130I	CCWGG	2 cut(s)	361, 428
BcoDI	GTCTC	2 cut(s)	145, 378
BfaI	CTAG	1 cut(s)	332
BmcAI	AGTACT	1 cut(s)	54
Bme1390I	CCNGG	2 cut(s)	361, 428
BmgT120I	GGNCC	1 cut(s)	308
BmiI	GGNNCC	2 cut(s)	68, 309
BmrFI	CCNGG	2 cut(s)	361, 428
BpmI	CTGGAG	1 cut(s)	343
BsaWI	WCCGGW	1 cut(s)	69
Bsc4I	CCNNNNNNNGG	1 cut(s)	366
Bse1I	ACTGG	1 cut(s)	272
BseBI	CCWGG	2 cut(s)	361, 428
BseLI	CCNNNNNNNGG	1 cut(s)	366
BseMII	CTCAG	2 cut(s)	218, 228
BseNI	ACTGG	1 cut(s)	272
BseRI	GAGGAG	1 cut(s)	99
Bsh1236I	CGCG	1 cut(s)	283
BshFI	GGCC	1 cut(s)	310
BsiHKAI	GWGCWC	1 cut(s)	222
BsiSI	CCGG	1 cut(s)	70
BslI	CCNNNNNNNGG	1 cut(s)	366
BsmAI	GTCTC	2 cut(s)	145, 378
BsnI	GGCC	1 cut(s)	310
Bsp1286I	GDGCHC	1 cut(s)	222
Bsp143I	GATC	1 cut(s)	328
BspANI	GGCC	1 cut(s)	310
BspCNI	CTCAG	2 cut(s)	219, 229
BspFNI	CGCG	1 cut(s)	283
BspLI	GGNNCC	2 cut(s)	68, 309
BsrI	ACTGG	1 cut(s)	272
BssMI	GATC	1 cut(s)	328
Bst2UI	CCWGG	2 cut(s)	361, 428
Bst4CI	ACNGT	1 cut(s)	40
BstDEI	CTNAG	3 cut(s)	170, 227, 237
BstFNI	CGCG	1 cut(s)	283
BstHHI	GCGC	1 cut(s)	285
BstKTI	GATC	1 cut(s)	331
BstMAI	GTCTC	2 cut(s)	145, 378
BstMBI	GATC	1 cut(s)	328
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 26
BstNI	CCWGG	2 cut(s)	361, 428
BstSCI	CCNGG	2 cut(s)	359, 426
BstUI	CGCG	1 cut(s)	283
BsuRI	GGCC	1 cut(s)	310
BtsIMutI	CAGTG	1 cut(s)	279
CfoI	GCGC	1 cut(s)	285
Cfr13I	GGNCC	1 cut(s)	308
Csp6I	GTAC	2 cut(s)	53, 404
CviAII	CATG	2 cut(s)	43, 410
CviJI	RGCY	8 cut(s)	11, 20, 29, 131, 220, 310, 351, 370
CviKI_1	RGCY	8 cut(s)	11, 20, 29, 131, 220, 310, 351, 370
CviQI	GTAC	2 cut(s)	53, 404
DdeI	CTNAG	3 cut(s)	170, 227, 237
DpnI	GATC	1 cut(s)	330
DpnII	GATC	1 cut(s)	328
Ecl136II	GAGCTC	1 cut(s)	220
Eco24I	GRGCYC	1 cut(s)	222
Eco53kI	GAGCTC	1 cut(s)	220
Eco57I	CTGAAG	2 cut(s)	42, 286
EcoICRI	GAGCTC	1 cut(s)	220
EcoO109I	RGGNCCY	1 cut(s)	308
EcoRII	CCWGG	2 cut(s)	359, 426
EcoT38I	GRGCYC	1 cut(s)	222
FaeI	CATG	2 cut(s)	46, 413
FaiI	YATR	4 cut(s)	44, 261, 338, 411
FatI	CATG	2 cut(s)	42, 409
FriOI	GRGCYC	1 cut(s)	222
FspBI	CTAG	1 cut(s)	332
GlaI	GCGC	1 cut(s)	284
GsuI	CTGGAG	1 cut(s)	343
HaeIII	GGCC	1 cut(s)	310
HapII	CCGG	1 cut(s)	70
HhaI	GCGC	1 cut(s)	285
Hin1II	CATG	2 cut(s)	46, 413
Hin6I	GCGC	1 cut(s)	283
HinP1I	GCGC	1 cut(s)	283
HinfI	GANTC	3 cut(s)	166, 208, 374
HpaII	CCGG	1 cut(s)	70
HphI	GGTGA	1 cut(s)	217
Hpy166II	GTNNAC	1 cut(s)	182
Hpy188I	TCNGA	2 cut(s)	17, 383
Hpy188III	TCNNGA	2 cut(s)	212, 332
Hpy8I	GTNNAC	1 cut(s)	182
Hpy99I	CGWCG	2 cut(s)	17, 65
HpyAV	CCTTC	1 cut(s)	101
HpyCH4III	ACNGT	1 cut(s)	40
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 26
HpyF3I	CTNAG	3 cut(s)	170, 227, 237
Hsp92II	CATG	2 cut(s)	46, 413
HspAI	GCGC	1 cut(s)	283
Kzo9I	GATC	1 cut(s)	328
LmnI	GCTCC	2 cut(s)	17, 225
MaeI	CTAG	1 cut(s)	332
MaeIII	GTNAC	1 cut(s)	34
MalI	GATC	1 cut(s)	330
MboI	GATC	1 cut(s)	328
MboII	GAAGA	4 cut(s)	35, 253, 292, 406
MhlI	GDGCHC	1 cut(s)	222
MluCI	AATT	4 cut(s)	115, 295, 313, 324
MmeI	TCCRAC	2 cut(s)	84, 247
MnlI	CCTC	4 cut(s)	77, 80, 104, 297
MseI	TTAA	1 cut(s)	419
MslI	CAYNNNNRTG	1 cut(s)	41
MspI	CCGG	1 cut(s)	70
MspR9I	CCNGG	2 cut(s)	361, 428
MvaI	CCWGG	2 cut(s)	361, 428
MvnI	CGCG	1 cut(s)	283
MwoI	GCNNNNNNNGC	2 cut(s)	17, 26
NdeII	GATC	1 cut(s)	328
NlaIII	CATG	2 cut(s)	46, 413
NlaIV	GGNNCC	2 cut(s)	68, 309
NmuCI	GTSAC	1 cut(s)	34
PfeI	GAWTC	3 cut(s)	166, 208, 374
PfoI	TCCNGGA	1 cut(s)	359
PsiI	TTATAA	1 cut(s)	261
Psp124BI	GAGCTC	1 cut(s)	222
Psp6I	CCWGG	2 cut(s)	359, 426
PspGI	CCWGG	2 cut(s)	359, 426
PspN4I	GGNNCC	2 cut(s)	68, 309
PspPI	GGNCC	1 cut(s)	308
RsaI	GTAC	2 cut(s)	54, 405
RsaNI	GTAC	2 cut(s)	53, 404
RseI	CAYNNNNRTG	1 cut(s)	41
SacI	GAGCTC	1 cut(s)	222
SaqAI	TTAA	1 cut(s)	419
Sau3AI	GATC	1 cut(s)	328
Sau96I	GGNCC	1 cut(s)	308
ScaI	AGTACT	1 cut(s)	54
ScrFI	CCNGG	2 cut(s)	361, 428
SduI	GDGCHC	1 cut(s)	222
SetI	ASST	6 cut(s)	22, 91, 133, 222, 347, 353
SmiMI	CAYNNNNRTG	1 cut(s)	41
Sse9I	AATT	4 cut(s)	115, 295, 313, 324
SspMI	CTAG	1 cut(s)	332
SstI	GAGCTC	1 cut(s)	222
StyD4I	CCNGG	2 cut(s)	359, 426
TaaI	ACNGT	1 cut(s)	40
TaqI	TCGA	1 cut(s)	60
TasI	AATT	4 cut(s)	115, 295, 313, 324
TatI	WGTACW	1 cut(s)	52
TfiI	GAWTC	3 cut(s)	166, 208, 374
Tru1I	TTAA	1 cut(s)	419
Tru9I	TTAA	1 cut(s)	419
TscAI	CASTG	1 cut(s)	279
TseFI	GTSAC	1 cut(s)	34
Tsp45I	GTSAC	1 cut(s)	34
TspDTI	ATGAA	1 cut(s)	398
TspRI	CASTG	1 cut(s)	279
XbaI	TCTAGA	1 cut(s)	331
XspI	CTAG	1 cut(s)	332
ZrmI	AGTACT	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.