Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0001726

Physical Location & Seq

Genomic Coordinates Reverse (-)

6039706 .. 6040716

Gene Structure 1011 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1051200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGATTGGGAGTGGCATTTTTGTTGCCTTGTTTGGGATGGGATACATTTTGAATATCCATGTGTTTGGTTTCTACCATGGGATGCAAATGATTGCCGGGTTGTTCGAAGCGACCGGTTGGCCTTCAGTTGTTGCTGTGATTGGTAATTGGTTTGGAAAGGGAAAAAGGGGTTTGATAATGGGCATATGGAATGCGCATACTTCGGTTGGGAATATAAGAGTCTATTTGTGGAGTATAGATAGGAGTTACAATTGGTATTACATATGTACTTCACCAATGTGGGACAATAAACTACTATTTACACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0008150 GO:0016020 GO:0031090 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048878 GO:0050801 GO:0055062 GO:0055081 GO:0055083 GO:0065007 GO:0065008 GO:0072505 GO:0072506 GO:0098588 GO:0098771 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1

Protein Analysis

103

Amino Acids

11.59

Weight (kDa)

9.25

Isoelectric Point (pI)

33.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_1	PF07690	4 - 72	1.2e-08	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001726)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13100 AT2G13100 AT2G13100 AT2G13100
fragaria_vesca	FvH4_1g01800
malus_domestica	MD02G1013700.v1.1 MD02G1014100.v1.1 MD04G1051200.v1.1 MD15G1160500.v1.1
prunus_persica	Prupe.7G255700_v2.0.a1 Prupe.7G255700_v2.0.a1
pyrus_communis	pycom02g01270 pycom04g04510 pycom15g14430
rosa_chinensis	RchiOBHm_Chr2g0086771 RchiOBHm_Chr4g0393381 RchiOBHm_Chr4g0439391 RchiOBHm_Chr7g0234391
rosa_laevigata	RLG00000015790 RLG00000017046 RLG00000032265 RLG00000033393
rosa_multiflora	Rmu_sc0001981.1_g000056 Rmu_sc0003226.1_g000089 Rmu_sc0005498.1_g000004 Rmu_sc0034546.1_g000001
rosa_roxburghii	Rroxscaffold_2G00154210 Rroxscaffold_3G00261580
rosa_rugosa	Rorug01G0469200 Rorug05G0053100 Rorug05G0053200 Rorug05G0053300
rosa_samantha	Rh1BG358100 Rh2AG021700 Rh2BG021700 Rh2CG022500 Rh2CG022600 Rh2DG022300 Rh3AG088200 Rh4BG042700 Rh5BG362500 Rh6AG178900 Rh6DG482900 Rh7BG011800
rosa_wichuraiana	Rw2G001740 Rw3G005830 Rw5G029340 Rw6G019570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	195
AcuI	CTGAAG	1 cut(s)	108
AfaI	GTAC	1 cut(s)	268
AfiI	CCNNNNNNNGG	1 cut(s)	33
AgeI	ACCGGT	1 cut(s)	113
AgsI	TTSAA	1 cut(s)	52
AleI	CACNNNNGTG	1 cut(s)	277
AoxI	GGCC	1 cut(s)	119
AsiGI	ACCGGT	1 cut(s)	113
AspLEI	GCGC	1 cut(s)	196
AsuC2I	CCSGG	1 cut(s)	97
AsuHPI	GGTGA	1 cut(s)	264
AsuII	TTCGAA	1 cut(s)	105
BccI	CCATC	1 cut(s)	31
BciVI	GTATCC	1 cut(s)	35
BcnI	CCSGG	1 cut(s)	97
BfuI	GTATCC	1 cut(s)	35
Bme1390I	CCNGG	1 cut(s)	97
BmrFI	CCNGG	1 cut(s)	97
BmsI	GCATC	1 cut(s)	72
Bpu14I	TTCGAA	1 cut(s)	105
BpuMI	CCSGG	1 cut(s)	97
BsaJI	CCNNGG	1 cut(s)	76
BsaWI	WCCGGW	1 cut(s)	113
Bsc4I	CCNNNNNNNGG	1 cut(s)	33
Bse118I	RCCGGY	1 cut(s)	113
BseDI	CCNNGG	1 cut(s)	76
BseGI	GGATG	2 cut(s)	42, 87
BseLI	CCNNNNNNNGG	1 cut(s)	33
Bsh1285I	CGRYCG	1 cut(s)	114
BshFI	GGCC	1 cut(s)	121
BshTI	ACCGGT	1 cut(s)	113
BsiEI	CGRYCG	1 cut(s)	114
BsiSI	CCGG	2 cut(s)	96, 114
BslFI	GGGAC	1 cut(s)	296
BslI	CCNNNNNNNGG	1 cut(s)	33
BsmFI	GGGAC	1 cut(s)	296
BsmI	GAATGC	1 cut(s)	196
BsnI	GGCC	1 cut(s)	121
Bsp119I	TTCGAA	1 cut(s)	105
Bsp19I	CCATGG	1 cut(s)	76
BspANI	GGCC	1 cut(s)	121
BspT104I	TTCGAA	1 cut(s)	105
BsrFI	RCCGGY	1 cut(s)	113
BssAI	RCCGGY	1 cut(s)	113
BssECI	CCNNGG	1 cut(s)	76
BssT1I	CCWWGG	1 cut(s)	76
BstBI	TTCGAA	1 cut(s)	105
BstDSI	CCRYGG	1 cut(s)	76
BstF5I	GGATG	2 cut(s)	42, 87
BstHHI	GCGC	1 cut(s)	196
BstMCI	CGRYCG	1 cut(s)	114
BstSCI	CCNGG	1 cut(s)	95
BstXI	CCANNNNNNTGG	1 cut(s)	65
BsuI	GTATCC	1 cut(s)	35
BsuRI	GGCC	1 cut(s)	121
BtgI	CCRYGG	1 cut(s)	76
BtsCI	GGATG	2 cut(s)	42, 87
CfoI	GCGC	1 cut(s)	196
Cfr10I	RCCGGY	1 cut(s)	113
Csp6I	GTAC	1 cut(s)	267
CspAI	ACCGGT	1 cut(s)	113
CviAII	CATG	2 cut(s)	59, 77
CviJI	RGCY	1 cut(s)	121
CviKI_1	RGCY	1 cut(s)	121
CviQI	GTAC	1 cut(s)	267
Eco130I	CCWWGG	1 cut(s)	76
Eco57I	CTGAAG	1 cut(s)	108
EcoT14I	CCWWGG	1 cut(s)	76
ErhI	CCWWGG	1 cut(s)	76
FaeI	CATG	2 cut(s)	62, 80
FaiI	YATR	9 cut(s)	60, 78, 185, 187, 198, 215, 236, 263, 265
FaqI	GGGAC	1 cut(s)	296
FatI	CATG	2 cut(s)	58, 76
FauNDI	CATATG	2 cut(s)	185, 263
FokI	GGATG	2 cut(s)	49, 94
FspAI	RTGCGCAY	1 cut(s)	195
FspI	TGCGCA	1 cut(s)	195
GlaI	GCGC	1 cut(s)	195
HaeIII	GGCC	1 cut(s)	121
HapII	CCGG	2 cut(s)	96, 114
HhaI	GCGC	1 cut(s)	196
Hin1II	CATG	2 cut(s)	62, 80
Hin6I	GCGC	1 cut(s)	194
HinP1I	GCGC	1 cut(s)	194
HinfI	GANTC	1 cut(s)	219
HpaII	CCGG	2 cut(s)	96, 114
HphI	GGTGA	1 cut(s)	264
HpyAV	CCTTC	1 cut(s)	132
HpyCH4V	TGCA	1 cut(s)	85
Hsp92II	CATG	2 cut(s)	62, 80
HspAI	GCGC	1 cut(s)	194
LpnPI	CCDG	2 cut(s)	109, 127
LweI	GCATC	1 cut(s)	72
MaeIII	GTNAC	1 cut(s)	245
MfeI	CAATTG	1 cut(s)	250
MluCI	AATT	2 cut(s)	145, 250
MlyI	GAGTC	1 cut(s)	228
MslI	CAYNNNNRTG	1 cut(s)	277
MspI	CCGG	2 cut(s)	96, 114
MspR9I	CCNGG	1 cut(s)	97
MunI	CAATTG	1 cut(s)	250
Mva1269I	GAATGC	1 cut(s)	196
NciI	CCSGG	1 cut(s)	97
NcoI	CCATGG	1 cut(s)	76
NdeI	CATATG	2 cut(s)	185, 263
NlaIII	CATG	2 cut(s)	62, 80
NsbI	TGCGCA	1 cut(s)	195
NspV	TTCGAA	1 cut(s)	105
OliI	CACNNNNGTG	1 cut(s)	277
PctI	GAATGC	1 cut(s)	196
PinAI	ACCGGT	1 cut(s)	113
PleI	GAGTC	1 cut(s)	227
PpsI	GAGTC	1 cut(s)	227
RsaI	GTAC	1 cut(s)	268
RsaNI	GTAC	1 cut(s)	267
RseI	CAYNNNNRTG	1 cut(s)	277
SchI	GAGTC	1 cut(s)	228
ScrFI	CCNGG	1 cut(s)	97
SfaNI	GCATC	1 cut(s)	72
SfuI	TTCGAA	1 cut(s)	105
SgeI	CNNG	6 cut(s)	40, 71, 89, 108, 109, 126
SmiMI	CAYNNNNRTG	1 cut(s)	277
Sse9I	AATT	2 cut(s)	145, 250
StyD4I	CCNGG	1 cut(s)	95
StyI	CCWWGG	1 cut(s)	76
TaqI	TCGA	1 cut(s)	105
TasI	AATT	2 cut(s)	145, 250
TatI	WGTACW	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.