Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001726

Physical Location & Seq

Genomic Coordinates Reverse (-)

59042247 .. 59043423

Gene Structure 1177 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21005

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGATACACTTTTGTTTGATAGAATGTCTGTGCAAAATCTTAATCTCGAATTCTGTCTTTTGTAAGGAGGAGGTTTTCCAAGTTGGTTGGAAGGAGGAAGTTGGGACGAGTCTGAAAGAATTGTCTGATATCTCACATTCGGAACAAAGATCCCAACCATCTTCATTGACTGTCGACAAGCCTAATGATGACGGTTACAATTGGCGGAAATATGGGCAGAAGCAGGAGCTATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0002831 GO:0002832 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009753 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031347 GO:0031348 GO:0032101 GO:0032102 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043900 GO:0043901 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0140110 GO:1900150 GO:1900424 GO:1900425 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04626 map04016 map04626

Pfam Domains

Protein Families

WRKY

Protein Analysis

78

Amino Acids

9.04

Weight (kDa)

5.26

Isoelectric Point (pI)

50.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001726)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13100 AT2G13100 AT2G13100 AT2G13100
fragaria_vesca	FvH4_1g01800
malus_domestica	MD02G1013700.v1.1 MD02G1014100.v1.1 MD04G1051200.v1.1 MD15G1160500.v1.1
prunus_persica	Prupe.7G255700_v2.0.a1 Prupe.7G255700_v2.0.a1
pyrus_communis	pycom02g01270 pycom04g04510 pycom15g14430
rosa_chinensis	RchiOBHm_Chr2g0086771 RchiOBHm_Chr4g0393381 RchiOBHm_Chr4g0439391 RchiOBHm_Chr7g0234391
rosa_laevigata	RLG00000015790 RLG00000017046 RLG00000032265 RLG00000033393
rosa_multiflora	Rmu_sc0001981.1_g000056 Rmu_sc0003226.1_g000089 Rmu_sc0005498.1_g000004 Rmu_sc0034546.1_g000001
rosa_roxburghii	Rroxscaffold_2G00154210 Rroxscaffold_3G00261580
rosa_rugosa	Rorug01G0469200 Rorug05G0053100 Rorug05G0053200 Rorug05G0053300
rosa_samantha	Rh1BG358100 Rh2AG021700 Rh2BG021700 Rh2CG022500 Rh2CG022600 Rh2DG022300 Rh3AG088200 Rh4BG042700 Rh5BG362500 Rh6AG178900 Rh6DG482900 Rh7BG011800
rosa_wichuraiana	Rw2G001740 Rw3G005830 Rw5G029340 Rw6G019570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	235
AccI	GTMKAC	1 cut(s)	174
AciI	CCGC	1 cut(s)	205
AclWI	GGATC	1 cut(s)	144
AcsI	RAATTY	1 cut(s)	49
AluBI	AGCT	1 cut(s)	229
AluI	AGCT	1 cut(s)	229
AlwI	GGATC	1 cut(s)	144
ApoI	RAATTY	1 cut(s)	49
BccI	CCATC	1 cut(s)	166
BseRI	GAGGAG	1 cut(s)	83
BslFI	GGGAC	1 cut(s)	118
BsmFI	GGGAC	1 cut(s)	118
Bsp143I	GATC	1 cut(s)	149
BspACI	CCGC	1 cut(s)	205
BspPI	GGATC	1 cut(s)	144
BssMI	GATC	1 cut(s)	149
Bst4CI	ACNGT	2 cut(s)	172, 194
BstKTI	GATC	1 cut(s)	152
BstMBI	GATC	1 cut(s)	149
BstX2I	RGATCY	1 cut(s)	149
BstYI	RGATCY	1 cut(s)	149
CviJI	RGCY	2 cut(s)	181, 229
CviKI_1	RGCY	2 cut(s)	181, 229
DpnI	GATC	1 cut(s)	151
DpnII	GATC	1 cut(s)	149
EciI	GGCGGA	1 cut(s)	220
Eco32I	GATATC	1 cut(s)	130
EcoRI	GAATTC	1 cut(s)	49
EcoRV	GATATC	1 cut(s)	130
FaiI	YATR	2 cut(s)	213, 235
FaqI	GGGAC	1 cut(s)	118
FblI	GTMKAC	1 cut(s)	174
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HinfI	GANTC	1 cut(s)	109
Hpy166II	GTNNAC	1 cut(s)	175
Hpy188I	TCNGA	3 cut(s)	114, 127, 142
Hpy188III	TCNNGA	1 cut(s)	46
Hpy8I	GTNNAC	1 cut(s)	175
HpyAV	CCTTC	1 cut(s)	85
HpyCH4III	ACNGT	2 cut(s)	172, 194
HpyCH4V	TGCA	1 cut(s)	33
Kzo9I	GATC	1 cut(s)	149
LmnI	GCTCC	1 cut(s)	226
LpnPI	CCDG	1 cut(s)	209
MaeIII	GTNAC	1 cut(s)	194
MalI	GATC	1 cut(s)	151
MboI	GATC	1 cut(s)	149
MboII	GAAGA	1 cut(s)	153
MfeI	CAATTG	1 cut(s)	199
MflI	RGATCY	1 cut(s)	149
MluCI	AATT	3 cut(s)	49, 119, 199
MlyI	GAGTC	1 cut(s)	118
MmeI	TCCRAC	1 cut(s)	68
MnlI	CCTC	3 cut(s)	61, 64, 88
MseI	TTAA	1 cut(s)	41
MunI	CAATTG	1 cut(s)	199
NdeII	GATC	1 cut(s)	149
PleI	GAGTC	1 cut(s)	117
PpsI	GAGTC	1 cut(s)	117
PsiI	TTATAA	1 cut(s)	235
PsuI	RGATCY	1 cut(s)	149
SalI	GTCGAC	1 cut(s)	173
SaqAI	TTAA	1 cut(s)	41
Sau3AI	GATC	1 cut(s)	149
SchI	GAGTC	1 cut(s)	118
SetI	ASST	2 cut(s)	75, 231
SgeI	CNNG	4 cut(s)	58, 92, 120, 190
Sse9I	AATT	3 cut(s)	49, 119, 199
SsiI	CCGC	1 cut(s)	205
TaaI	ACNGT	2 cut(s)	172, 194
TaqI	TCGA	2 cut(s)	47, 174
TasI	AATT	3 cut(s)	49, 119, 199
Tru1I	TTAA	1 cut(s)	41
Tru9I	TTAA	1 cut(s)	41
TspDTI	ATGAA	1 cut(s)	153
XapI	RAATTY	1 cut(s)	49
XmiI	GTMKAC	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.