Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0001726

Physical Location & Seq

Genomic Coordinates Forward (+)

48920290 .. 48920592

Gene Structure 303 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG358100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGGGACCAATGGAAGAGGGAGCTGCTGAGACAAATTACACCAAGCCCTTGGGGATTCGATACATAGAGTACATAAAAAGATCGAAGATTTCATACAAAACCCACCAAGTTATTGTTTTGATCGTTACTTTTCTAGCCTATGCAAGCTACCATGCCGCCCGGAAAACCACTAGTGTGGTCAAGAGTACTCTTGATCCTTCATCCGATGAGGTGGGGTTGAGTTTCTTGTCATGGAGGATGAGTTACTTGGGTCAACCAGGGGAAAGAAGGAGACGATTTTCGTGGATTCTTGGAGATGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0042592 GO:0048878 GO:0050801 GO:0055062 GO:0055081 GO:0055083 GO:0065007 GO:0065008 GO:0072505 GO:0072506 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1 Sugar_tr

Protein Analysis

100

Amino Acids

11.38

Weight (kDa)

9.64

Isoelectric Point (pI)

46.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001726)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13100 AT2G13100 AT2G13100 AT2G13100
fragaria_vesca	FvH4_1g01800
malus_domestica	MD02G1013700.v1.1 MD02G1014100.v1.1 MD04G1051200.v1.1 MD15G1160500.v1.1
prunus_persica	Prupe.7G255700_v2.0.a1 Prupe.7G255700_v2.0.a1
pyrus_communis	pycom02g01270 pycom04g04510 pycom15g14430
rosa_chinensis	RchiOBHm_Chr2g0086771 RchiOBHm_Chr4g0393381 RchiOBHm_Chr4g0439391 RchiOBHm_Chr7g0234391
rosa_laevigata	RLG00000015790 RLG00000017046 RLG00000032265 RLG00000033393
rosa_multiflora	Rmu_sc0001981.1_g000056 Rmu_sc0003226.1_g000089 Rmu_sc0005498.1_g000004 Rmu_sc0034546.1_g000001
rosa_roxburghii	Rroxscaffold_2G00154210 Rroxscaffold_3G00261580
rosa_rugosa	Rorug01G0469200 Rorug05G0053100 Rorug05G0053200 Rorug05G0053300
rosa_samantha	Rh1BG358100 Rh2AG021700 Rh2BG021700 Rh2CG022500 Rh2CG022600 Rh2DG022300 Rh3AG088200 Rh4BG042700 Rh5BG362500 Rh6AG178900 Rh6DG482900 Rh7BG011800
rosa_wichuraiana	Rw2G001740 Rw3G005830 Rw5G029340 Rw6G019570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	156
AclWI	GGATC	1 cut(s)	188
AfaI	GTAC	2 cut(s)	71, 187
AhlI	ACTAGT	1 cut(s)	170
AjnI	CCWGG	1 cut(s)	256
AleI	CACNNNNGTG	1 cut(s)	173
AluBI	AGCT	2 cut(s)	23, 147
AluI	AGCT	2 cut(s)	23, 147
Alw26I	GTCTC	2 cut(s)	23, 265
AlwI	GGATC	1 cut(s)	188
ApeKI	GCWGC	1 cut(s)	23
AspS9I	GGNCC	1 cut(s)	5
AsuC2I	CCSGG	1 cut(s)	160
AvaII	GGWCC	1 cut(s)	5
BarI	GAAGNNNNNNTAC	2 cut(s)	77, 109
BbvI	GCAGC	1 cut(s)	10
BccI	CCATC	1 cut(s)	290
BciT130I	CCWGG	1 cut(s)	258
BcnI	CCSGG	1 cut(s)	160
BcoDI	GTCTC	2 cut(s)	23, 265
BcuI	ACTAGT	1 cut(s)	170
BfaI	CTAG	2 cut(s)	134, 171
BisI	GCNGC	2 cut(s)	24, 156
BlsI	GCNGC	2 cut(s)	25, 157
BmcAI	AGTACT	1 cut(s)	187
Bme1390I	CCNGG	2 cut(s)	160, 258
Bme18I	GGWCC	1 cut(s)	5
BmgT120I	GGNCC	1 cut(s)	5
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	2 cut(s)	160, 258
BpuMI	CCSGG	1 cut(s)	160
BsaJI	CCNNGG	2 cut(s)	48, 257
BsaXI	ACNNNNNCTCC	2 cut(s)	226, 256
BseBI	CCWGG	1 cut(s)	258
BseDI	CCNNGG	2 cut(s)	48, 257
BseGI	GGATG	2 cut(s)	200, 243
BseMII	CTCAG	1 cut(s)	18
BseXI	GCAGC	1 cut(s)	10
BsiSI	CCGG	1 cut(s)	160
BslFI	GGGAC	1 cut(s)	18
BsmAI	GTCTC	2 cut(s)	23, 265
BsmBI	CGTCTC	1 cut(s)	265
BsmFI	GGGAC	1 cut(s)	18
Bsp143I	GATC	3 cut(s)	80, 120, 193
BspACI	CCGC	1 cut(s)	156
BspCNI	CTCAG	1 cut(s)	19
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	188
BssECI	CCNNGG	2 cut(s)	48, 257
BssMI	GATC	3 cut(s)	80, 120, 193
BssT1I	CCWWGG	1 cut(s)	48
Bst2UI	CCWGG	1 cut(s)	258
Bst6I	CTCTTC	1 cut(s)	9
BstC8I	GCNNGC	1 cut(s)	145
BstDEI	CTNAG	1 cut(s)	27
BstF5I	GGATG	2 cut(s)	200, 243
BstKTI	GATC	3 cut(s)	83, 123, 196
BstMAI	GTCTC	2 cut(s)	23, 265
BstMBI	GATC	3 cut(s)	80, 120, 193
BstNI	CCWGG	1 cut(s)	258
BstSCI	CCNGG	2 cut(s)	158, 256
BstV1I	GCAGC	1 cut(s)	10
BstXI	CCANNNNNNTGG	2 cut(s)	49, 175
BtsCI	GGATG	2 cut(s)	200, 243
Cac8I	GCNNGC	1 cut(s)	145
Cfr13I	GGNCC	1 cut(s)	5
Csp6I	GTAC	2 cut(s)	70, 186
CviAII	CATG	2 cut(s)	152, 231
CviJI	RGCY	4 cut(s)	23, 46, 137, 147
CviKI_1	RGCY	4 cut(s)	23, 46, 137, 147
CviQI	GTAC	2 cut(s)	70, 186
DdeI	CTNAG	1 cut(s)	27
DpnI	GATC	3 cut(s)	82, 122, 195
DpnII	GATC	3 cut(s)	80, 120, 193
Eam1104I	CTCTTC	1 cut(s)	9
EarI	CTCTTC	1 cut(s)	9
Eco130I	CCWWGG	1 cut(s)	48
Eco47I	GGWCC	1 cut(s)	5
EcoRII	CCWGG	1 cut(s)	256
EcoT14I	CCWWGG	1 cut(s)	48
ErhI	CCWWGG	1 cut(s)	48
Esp3I	CGTCTC	1 cut(s)	265
FaeI	CATG	2 cut(s)	155, 234
FaiI	YATR	6 cut(s)	65, 74, 94, 141, 153, 232
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	2 cut(s)	151, 230
Fnu4HI	GCNGC	2 cut(s)	24, 156
FokI	GGATG	2 cut(s)	187, 250
Fsp4HI	GCNGC	2 cut(s)	24, 156
FspBI	CTAG	2 cut(s)	134, 171
GluI	GCNGC	2 cut(s)	24, 156
HapII	CCGG	1 cut(s)	160
Hin1II	CATG	2 cut(s)	155, 234
HincII	GTYRAC	1 cut(s)	254
HindII	GTYRAC	1 cut(s)	254
HinfI	GANTC	2 cut(s)	55, 286
HpaII	CCGG	1 cut(s)	160
Hpy166II	GTNNAC	1 cut(s)	254
Hpy188I	TCNGA	1 cut(s)	205
Hpy188III	TCNNGA	2 cut(s)	181, 191
Hpy8I	GTNNAC	1 cut(s)	254
HpyAV	CCTTC	2 cut(s)	207, 261
HpyCH4V	TGCA	1 cut(s)	143
HpyF3I	CTNAG	1 cut(s)	27
Hsp92II	CATG	2 cut(s)	155, 234
Kzo9I	GATC	3 cut(s)	80, 120, 193
LmnI	GCTCC	1 cut(s)	20
LpnPI	CCDG	3 cut(s)	173, 243, 270
Lsp1109I	GCAGC	1 cut(s)	10
MaeI	CTAG	2 cut(s)	134, 171
MaeIII	GTNAC	2 cut(s)	124, 242
MalI	GATC	3 cut(s)	82, 122, 195
MboI	GATC	3 cut(s)	80, 120, 193
MboII	GAAGA	2 cut(s)	26, 97
MluCI	AATT	1 cut(s)	34
MnlI	CCTC	3 cut(s)	10, 202, 228
MslI	CAYNNNNRTG	1 cut(s)	173
MspI	CCGG	1 cut(s)	160
MspR9I	CCNGG	2 cut(s)	160, 258
MvaI	CCWGG	1 cut(s)	258
NciI	CCSGG	1 cut(s)	160
NdeII	GATC	3 cut(s)	80, 120, 193
NlaIII	CATG	2 cut(s)	155, 234
NlaIV	GGNNCC	1 cut(s)	6
OliI	CACNNNNGTG	1 cut(s)	173
PfeI	GAWTC	2 cut(s)	55, 286
PkrI	GCNGC	2 cut(s)	25, 157
Psp6I	CCWGG	1 cut(s)	256
PspGI	CCWGG	1 cut(s)	256
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	5
RsaI	GTAC	2 cut(s)	71, 187
RsaNI	GTAC	2 cut(s)	70, 186
RseI	CAYNNNNRTG	1 cut(s)	173
SatI	GCNGC	2 cut(s)	24, 156
Sau3AI	GATC	3 cut(s)	80, 120, 193
Sau96I	GGNCC	1 cut(s)	5
ScaI	AGTACT	1 cut(s)	187
ScrFI	CCNGG	2 cut(s)	160, 258
SetI	ASST	3 cut(s)	25, 149, 213
SinI	GGWCC	1 cut(s)	5
SmiMI	CAYNNNNRTG	1 cut(s)	173
SpeI	ACTAGT	1 cut(s)	170
Sse9I	AATT	1 cut(s)	34
SsiI	CCGC	1 cut(s)	156
SspMI	CTAG	2 cut(s)	134, 171
StyD4I	CCNGG	2 cut(s)	158, 256
StyI	CCWWGG	1 cut(s)	48
TaqI	TCGA	2 cut(s)	58, 83
TasI	AATT	1 cut(s)	34
TatI	WGTACW	2 cut(s)	69, 185
TauI	GCSGC	1 cut(s)	158
TfiI	GAWTC	2 cut(s)	55, 286
TseI	GCWGC	1 cut(s)	23
TspDTI	ATGAA	2 cut(s)	81, 189
VpaK11BI	GGWCC	1 cut(s)	5
XspI	CTAG	2 cut(s)	134, 171
ZrmI	AGTACT	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.