Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001726

Physical Location & Seq

Genomic Coordinates Reverse (-)

26571652 .. 26572827

Gene Structure 1176 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033393

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGCGGATCACCCCGGCAGAAAGATTCCGACCACGGCTCGACCATCTCAGACATACAGAAAGGAAAGAGGATTTCTACGAGTTTCTGAAGCAAGATCTGCAGATCTGTGTCTCCCAATTTCCTCATTCCCCTCACCATCTAGTTGTGAACTGAATCGAACAAGATCATGGTGGAAGTCGTCGGAGCTGAAGAAGCCGGTGTCATGGTCATGGTGGAAGTACTGCTCGACGGGAACCGGAAAGGGAACCATTGTCAAGAGCGTTCTTGAGCCCAAACTCCAGTCCAATTCGAGCTCATTCGACACCGGGTGGGCTCCCTTTAATGGGCCTCAGGGCACCCACAGGCTCGGAGAACTTGATCTTGCATTTCTGTCTGCATATTCTATTGGGATGTATTTTGCAGGGCATGTTGGTGATGGGATTGATTTGAGTTGTGGGGAATTGGTTTGGGAAGACGAACCGGGGGTTGATAATGGGGGTGTGCAGTTCACATACCTCGGTTGGGAACATTGTTGGATCGGTTATTACTTCCGGGGTTTTGTGCCACTTTGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0042592 GO:0048878 GO:0050801 GO:0055062 GO:0055081 GO:0055083 GO:0065007 GO:0065008 GO:0072505 GO:0072506 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1

Protein Analysis

186

Amino Acids

20.7

Weight (kDa)

7.61

Isoelectric Point (pI)

40.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001726)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13100 AT2G13100 AT2G13100 AT2G13100
fragaria_vesca	FvH4_1g01800
malus_domestica	MD02G1013700.v1.1 MD02G1014100.v1.1 MD04G1051200.v1.1 MD15G1160500.v1.1
prunus_persica	Prupe.7G255700_v2.0.a1 Prupe.7G255700_v2.0.a1
pyrus_communis	pycom02g01270 pycom04g04510 pycom15g14430
rosa_chinensis	RchiOBHm_Chr2g0086771 RchiOBHm_Chr4g0393381 RchiOBHm_Chr4g0439391 RchiOBHm_Chr7g0234391
rosa_laevigata	RLG00000015790 RLG00000017046 RLG00000032265 RLG00000033393
rosa_multiflora	Rmu_sc0001981.1_g000056 Rmu_sc0003226.1_g000089 Rmu_sc0005498.1_g000004 Rmu_sc0034546.1_g000001
rosa_roxburghii	Rroxscaffold_2G00154210 Rroxscaffold_3G00261580
rosa_rugosa	Rorug01G0469200 Rorug05G0053100 Rorug05G0053200 Rorug05G0053300
rosa_samantha	Rh1BG358100 Rh2AG021700 Rh2BG021700 Rh2CG022500 Rh2CG022600 Rh2DG022300 Rh3AG088200 Rh4BG042700 Rh5BG362500 Rh6AG178900 Rh6DG482900 Rh7BG011800
rosa_wichuraiana	Rw2G001740 Rw3G005830 Rw5G029340 Rw6G019570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	335
AciI	CCGC	1 cut(s)	5
AclWI	GGATC	2 cut(s)	15, 524
AcuI	CTGAAG	2 cut(s)	108, 209
AdeI	CACNNNGTG	1 cut(s)	309
AfaI	GTAC	1 cut(s)	221
AfiI	CCNNNNNNNGG	3 cut(s)	323, 324, 502
AluBI	AGCT	2 cut(s)	187, 294
AluI	AGCT	2 cut(s)	187, 294
Alw21I	GWGCWC	1 cut(s)	296
Alw26I	GTCTC	1 cut(s)	116
AlwI	GGATC	2 cut(s)	15, 524
AoxI	GGCC	1 cut(s)	326
AspS9I	GGNCC	1 cut(s)	326
AsuC2I	CCSGG	4 cut(s)	15, 307, 462, 533
AsuHPI	GGTGA	2 cut(s)	126, 425
AxyI	CCTNAGG	1 cut(s)	330
BaeGI	GKGCMC	1 cut(s)	338
BanI	GGYRCC	1 cut(s)	335
BanII	GRGCYC	3 cut(s)	273, 296, 316
BbsI	GAAGAC	1 cut(s)	459
Bbv12I	GWGCWC	1 cut(s)	296
BccI	CCATC	3 cut(s)	52, 145, 410
BceAI	ACGGC	1 cut(s)	51
BcnI	CCSGG	4 cut(s)	15, 307, 462, 533
BcoDI	GTCTC	1 cut(s)	116
BfaI	CTAG	1 cut(s)	141
BfmI	CTRYAG	1 cut(s)	99
BglII	AGATCT	2 cut(s)	95, 103
BmcAI	AGTACT	1 cut(s)	221
Bme1390I	CCNGG	4 cut(s)	15, 307, 462, 533
BmgT120I	GGNCC	1 cut(s)	326
BmiI	GGNNCC	4 cut(s)	235, 247, 315, 337
BmrFI	CCNGG	4 cut(s)	15, 307, 462, 533
BpiI	GAAGAC	1 cut(s)	459
BpmI	CTGGAG	1 cut(s)	263
BpuEI	CTTGAG	1 cut(s)	287
BpuMI	CCSGG	4 cut(s)	15, 307, 462, 533
BsaJI	CCNNGG	5 cut(s)	13, 33, 461, 496, 532
BsaWI	WCCGGW	1 cut(s)	236
Bsc4I	CCNNNNNNNGG	3 cut(s)	323, 324, 502
Bse118I	RCCGGY	1 cut(s)	196
Bse1I	ACTGG	1 cut(s)	280
Bse21I	CCTNAGG	1 cut(s)	330
BseDI	CCNNGG	5 cut(s)	13, 33, 461, 496, 532
BseGI	GGATG	1 cut(s)	396
BseLI	CCNNNNNNNGG	3 cut(s)	323, 324, 502
BseMII	CTCAG	2 cut(s)	62, 344
BseNI	ACTGG	1 cut(s)	280
BseSI	GKGCMC	1 cut(s)	338
BsgI	GTGCAG	1 cut(s)	503
BshFI	GGCC	1 cut(s)	328
BshNI	GGYRCC	1 cut(s)	335
BsiHKAI	GWGCWC	1 cut(s)	296
BsiSI	CCGG	6 cut(s)	15, 197, 237, 306, 461, 532
BslI	CCNNNNNNNGG	3 cut(s)	323, 324, 502
BsmAI	GTCTC	1 cut(s)	116
BsnI	GGCC	1 cut(s)	328
Bsp1286I	GDGCHC	4 cut(s)	273, 296, 316, 338
Bsp143I	GATC	6 cut(s)	7, 95, 103, 164, 358, 516
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	1 cut(s)	328
BspCNI	CTCAG	2 cut(s)	61, 343
BspLI	GGNNCC	4 cut(s)	235, 247, 315, 337
BspMAI	CTGCAG	1 cut(s)	103
BspPI	GGATC	2 cut(s)	15, 524
BspT107I	GGYRCC	1 cut(s)	335
BsrFI	RCCGGY	1 cut(s)	196
BsrI	ACTGG	1 cut(s)	280
BssAI	RCCGGY	1 cut(s)	196
BssECI	CCNNGG	5 cut(s)	13, 33, 461, 496, 532
BssMI	GATC	6 cut(s)	7, 95, 103, 164, 358, 516
BstAPI	GCANNNNNTGC	1 cut(s)	98
BstDEI	CTNAG	2 cut(s)	48, 330
BstDSI	CCRYGG	1 cut(s)	33
BstF5I	GGATG	1 cut(s)	396
BstKTI	GATC	6 cut(s)	10, 98, 106, 167, 361, 519
BstMAI	GTCTC	1 cut(s)	116
BstMBI	GATC	6 cut(s)	7, 95, 103, 164, 358, 516
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 193
BstNSI	RCATGY	1 cut(s)	410
BstSCI	CCNGG	4 cut(s)	13, 305, 460, 531
BstSFI	CTRYAG	1 cut(s)	99
BstSLI	GKGCMC	1 cut(s)	338
BstV2I	GAAGAC	1 cut(s)	459
BstX2I	RGATCY	2 cut(s)	95, 103
BstYI	RGATCY	2 cut(s)	95, 103
Bsu36I	CCTNAGG	1 cut(s)	330
BsuRI	GGCC	1 cut(s)	328
BtgI	CCRYGG	1 cut(s)	33
BtsCI	GGATG	1 cut(s)	396
Cfr10I	RCCGGY	1 cut(s)	196
Cfr13I	GGNCC	1 cut(s)	326
Csp6I	GTAC	1 cut(s)	220
CviAII	CATG	4 cut(s)	168, 204, 210, 407
CviJI	RGCY	8 cut(s)	38, 187, 196, 271, 294, 314, 328, 346
CviKI_1	RGCY	8 cut(s)	38, 187, 196, 271, 294, 314, 328, 346
CviQI	GTAC	1 cut(s)	220
DdeI	CTNAG	2 cut(s)	48, 330
DpnI	GATC	6 cut(s)	9, 97, 105, 166, 360, 518
DpnII	GATC	6 cut(s)	7, 95, 103, 164, 358, 516
DraIII	CACNNNGTG	1 cut(s)	309
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	294
Eco24I	GRGCYC	3 cut(s)	273, 296, 316
Eco53kI	GAGCTC	1 cut(s)	294
Eco57I	CTGAAG	2 cut(s)	108, 209
Eco81I	CCTNAGG	1 cut(s)	330
EcoICRI	GAGCTC	1 cut(s)	294
EcoT38I	GRGCYC	3 cut(s)	273, 296, 316
FaeI	CATG	4 cut(s)	171, 207, 213, 410
FaiI	YATR	7 cut(s)	55, 169, 205, 211, 379, 408, 493
FatI	CATG	4 cut(s)	167, 203, 209, 406
FokI	GGATG	1 cut(s)	403
FriOI	GRGCYC	3 cut(s)	273, 296, 316
FspBI	CTAG	1 cut(s)	141
GsuI	CTGGAG	1 cut(s)	263
HaeIII	GGCC	1 cut(s)	328
HapII	CCGG	6 cut(s)	15, 197, 237, 306, 461, 532
Hin1II	CATG	4 cut(s)	171, 207, 213, 410
HinfI	GANTC	2 cut(s)	25, 154
HpaII	CCGG	6 cut(s)	15, 197, 237, 306, 461, 532
HphI	GGTGA	2 cut(s)	126, 425
Hpy166II	GTNNAC	2 cut(s)	149, 489
Hpy188I	TCNGA	5 cut(s)	30, 51, 88, 184, 350
Hpy188III	TCNNGA	2 cut(s)	256, 266
Hpy8I	GTNNAC	2 cut(s)	149, 489
Hpy99I	CGWCG	2 cut(s)	184, 232
HpyCH4V	TGCA	5 cut(s)	101, 365, 377, 401, 484
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 193
HpyF3I	CTNAG	2 cut(s)	48, 330
Hsp92II	CATG	4 cut(s)	171, 207, 213, 410
Kzo9I	GATC	6 cut(s)	7, 95, 103, 164, 358, 516
LmnI	GCTCC	2 cut(s)	184, 319
MaeI	CTAG	1 cut(s)	141
MalI	GATC	6 cut(s)	9, 97, 105, 166, 360, 518
MboI	GATC	6 cut(s)	7, 95, 103, 164, 358, 516
MboII	GAAGA	2 cut(s)	202, 464
MflI	RGATCY	2 cut(s)	95, 103
MhlI	GDGCHC	4 cut(s)	273, 296, 316, 338
MluCI	AATT	3 cut(s)	117, 286, 440
MmeI	TCCRAC	3 cut(s)	53, 162, 494
MnlI	CCTC	5 cut(s)	62, 133, 142, 339, 506
MseI	TTAA	1 cut(s)	321
MslI	CAYNNNNRTG	2 cut(s)	208, 411
MspI	CCGG	6 cut(s)	15, 197, 237, 306, 461, 532
MspR9I	CCNGG	4 cut(s)	15, 307, 462, 533
MwoI	GCNNNNNNNGC	2 cut(s)	98, 193
NciI	CCSGG	4 cut(s)	15, 307, 462, 533
NdeII	GATC	6 cut(s)	7, 95, 103, 164, 358, 516
NlaIII	CATG	4 cut(s)	171, 207, 213, 410
NlaIV	GGNNCC	4 cut(s)	235, 247, 315, 337
NspI	RCATGY	1 cut(s)	410
PfeI	GAWTC	2 cut(s)	25, 154
Psp124BI	GAGCTC	1 cut(s)	296
PspN4I	GGNNCC	4 cut(s)	235, 247, 315, 337
PspPI	GGNCC	1 cut(s)	326
PstI	CTGCAG	1 cut(s)	103
PsuI	RGATCY	2 cut(s)	95, 103
RsaI	GTAC	1 cut(s)	221
RsaNI	GTAC	1 cut(s)	220
RseI	CAYNNNNRTG	2 cut(s)	208, 411
SacI	GAGCTC	1 cut(s)	296
SaqAI	TTAA	1 cut(s)	321
Sau3AI	GATC	6 cut(s)	7, 95, 103, 164, 358, 516
Sau96I	GGNCC	1 cut(s)	326
ScaI	AGTACT	1 cut(s)	221
ScrFI	CCNGG	4 cut(s)	15, 307, 462, 533
SduI	GDGCHC	4 cut(s)	273, 296, 316, 338
SetI	ASST	3 cut(s)	189, 296, 498
SfcI	CTRYAG	1 cut(s)	99
SmiMI	CAYNNNNRTG	2 cut(s)	208, 411
SmlI	CTYRAG	1 cut(s)	266
SmoI	CTYRAG	1 cut(s)	266
Sse9I	AATT	3 cut(s)	117, 286, 440
SsiI	CCGC	1 cut(s)	5
SspMI	CTAG	1 cut(s)	141
SstI	GAGCTC	1 cut(s)	296
StyD4I	CCNGG	4 cut(s)	13, 305, 460, 531
TaqI	TCGA	5 cut(s)	40, 157, 227, 290, 300
TasI	AATT	3 cut(s)	117, 286, 440
TatI	WGTACW	1 cut(s)	219
TfiI	GAWTC	2 cut(s)	25, 154
Tru1I	TTAA	1 cut(s)	321
Tru9I	TTAA	1 cut(s)	321
XceI	RCATGY	1 cut(s)	410
XspI	CTAG	1 cut(s)	141
ZrmI	AGTACT	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.