Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0034546.1

Orthogroup ID

OG0001726

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 434

Gene Structure 434 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0034546.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 388 bp

gctcggagaacttgatcttgcatttctgtctgcattttctattgggatgtattttgcagggcatgtcggtgatgggattgatttgaggttgtttcttgcttatgggatgttggggagtggagttttgactcgtcttttcgggttaggttattggtgcaatgtgcatatgttgtggtattttgtgggtgtgcaagttgtgtgtgggttgtttcagtcgataggttggccttgtgttgtggcagttgtggggaattggtttgggaagacgaagcgggggttgataatgggggtgtggagttcacatacctcggttgggaacattgttggatcggttattgcttccggggttttgtgccactttgtttttgatacgcattgccagaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0042592 GO:0048878 GO:0050801 GO:0055062 GO:0055081 GO:0055083 GO:0065007 GO:0065008 GO:0072505 GO:0072506 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1

Protein Analysis

128

Amino Acids

13.87

Weight (kDa)

7.1

Isoelectric Point (pI)

14.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001726)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13100 AT2G13100 AT2G13100 AT2G13100
fragaria_vesca	FvH4_1g01800
malus_domestica	MD02G1013700.v1.1 MD02G1014100.v1.1 MD04G1051200.v1.1 MD15G1160500.v1.1
prunus_persica	Prupe.7G255700_v2.0.a1 Prupe.7G255700_v2.0.a1
pyrus_communis	pycom02g01270 pycom04g04510 pycom15g14430
rosa_chinensis	RchiOBHm_Chr2g0086771 RchiOBHm_Chr4g0393381 RchiOBHm_Chr4g0439391 RchiOBHm_Chr7g0234391
rosa_laevigata	RLG00000015790 RLG00000017046 RLG00000032265 RLG00000033393
rosa_multiflora	Rmu_sc0001981.1_g000056 Rmu_sc0003226.1_g000089 Rmu_sc0005498.1_g000004 Rmu_sc0034546.1_g000001
rosa_roxburghii	Rroxscaffold_2G00154210 Rroxscaffold_3G00261580
rosa_rugosa	Rorug01G0469200 Rorug05G0053100 Rorug05G0053200 Rorug05G0053300
rosa_samantha	Rh1BG358100 Rh2AG021700 Rh2BG021700 Rh2CG022500 Rh2CG022600 Rh2DG022300 Rh3AG088200 Rh4BG042700 Rh5BG362500 Rh6AG178900 Rh6DG482900 Rh7BG011800
rosa_wichuraiana	Rw2G001740 Rw3G005830 Rw5G029340 Rw6G019570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	272
AclWI	GGATC	1 cut(s)	335
AfiI	CCNNNNNNNGG	1 cut(s)	313
AlwI	GGATC	1 cut(s)	335
AoxI	GGCC	1 cut(s)	225
AsuC2I	CCSGG	1 cut(s)	344
AsuHPI	GGTGA	1 cut(s)	81
BbsI	GAAGAC	1 cut(s)	270
BccI	CCATC	1 cut(s)	66
BcnI	CCSGG	1 cut(s)	344
Bme1390I	CCNGG	1 cut(s)	344
BmrFI	CCNGG	1 cut(s)	344
BpiI	GAAGAC	1 cut(s)	270
BpuMI	CCSGG	1 cut(s)	344
BsaJI	CCNNGG	2 cut(s)	307, 343
Bsc4I	CCNNNNNNNGG	1 cut(s)	313
Bse3DI	GCAATG	2 cut(s)	164, 374
BseDI	CCNNGG	2 cut(s)	307, 343
BseGI	GGATG	2 cut(s)	52, 112
BseLI	CCNNNNNNNGG	1 cut(s)	313
BseMI	GCAATG	2 cut(s)	164, 374
BshFI	GGCC	1 cut(s)	227
BsiSI	CCGG	1 cut(s)	343
BslI	CCNNNNNNNGG	1 cut(s)	313
BsnI	GGCC	1 cut(s)	227
Bsp143I	GATC	2 cut(s)	14, 327
BspACI	CCGC	1 cut(s)	272
BspANI	GGCC	1 cut(s)	227
BspPI	GGATC	1 cut(s)	335
BsrDI	GCAATG	2 cut(s)	164, 374
BssECI	CCNNGG	2 cut(s)	307, 343
BssMI	GATC	2 cut(s)	14, 327
BstF5I	GGATG	2 cut(s)	52, 112
BstKTI	GATC	2 cut(s)	17, 330
BstMBI	GATC	2 cut(s)	14, 327
BstNSI	RCATGY	1 cut(s)	66
BstSCI	CCNGG	1 cut(s)	342
BstV2I	GAAGAC	1 cut(s)	270
BsuRI	GGCC	1 cut(s)	227
BtsCI	GGATG	2 cut(s)	52, 112
CviAII	CATG	1 cut(s)	63
CviJI	RGCY	1 cut(s)	227
CviKI_1	RGCY	1 cut(s)	227
DpnI	GATC	2 cut(s)	16, 329
DpnII	GATC	2 cut(s)	14, 327
FaeI	CATG	1 cut(s)	66
FaiI	YATR	5 cut(s)	64, 103, 166, 168, 304
FatI	CATG	1 cut(s)	62
FauI	CCCGC	1 cut(s)	265
FauNDI	CATATG	1 cut(s)	166
FokI	GGATG	2 cut(s)	59, 119
HaeIII	GGCC	1 cut(s)	227
HapII	CCGG	1 cut(s)	343
Hin1II	CATG	1 cut(s)	66
HinfI	GANTC	1 cut(s)	128
HpaII	CCGG	1 cut(s)	343
HphI	GGTGA	1 cut(s)	81
Hpy166II	GTNNAC	1 cut(s)	300
Hpy188I	TCNGA	1 cut(s)	6
Hpy8I	GTNNAC	1 cut(s)	300
HpyCH4V	TGCA	6 cut(s)	21, 33, 57, 157, 164, 191
Hsp92II	CATG	1 cut(s)	66
Kzo9I	GATC	2 cut(s)	14, 327
LpnPI	CCDG	2 cut(s)	43, 356
MalI	GATC	2 cut(s)	16, 329
MboI	GATC	2 cut(s)	14, 327
MboII	GAAGA	1 cut(s)	275
MluCI	AATT	1 cut(s)	251
MlyI	GAGTC	1 cut(s)	122
MmeI	TCCRAC	1 cut(s)	305
MnlI	CCTC	2 cut(s)	79, 317
MslI	CAYNNNNRTG	1 cut(s)	67
MspI	CCGG	1 cut(s)	343
MspR9I	CCNGG	1 cut(s)	344
NciI	CCSGG	1 cut(s)	344
NdeI	CATATG	1 cut(s)	166
NdeII	GATC	2 cut(s)	14, 327
NlaIII	CATG	1 cut(s)	66
NspI	RCATGY	1 cut(s)	66
PleI	GAGTC	1 cut(s)	122
PpsI	GAGTC	1 cut(s)	122
RseI	CAYNNNNRTG	1 cut(s)	67
Sau3AI	GATC	2 cut(s)	14, 327
SchI	GAGTC	1 cut(s)	122
ScrFI	CCNGG	1 cut(s)	344
SetI	ASST	4 cut(s)	90, 149, 224, 309
SmiMI	CAYNNNNRTG	1 cut(s)	67
Sse9I	AATT	1 cut(s)	251
SsiI	CCGC	1 cut(s)	272
StyD4I	CCNGG	1 cut(s)	342
TaqI	TCGA	1 cut(s)	216
TasI	AATT	1 cut(s)	251
XceI	RCATGY	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.