Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007669

Physical Location & Seq

Genomic Coordinates Forward (+)

10707344 .. 10709015

Gene Structure 1672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G19690.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGCTTCAAATTCAGCACTTCTCATGAAAACAATCTTCCTCGTACTCATTTTTGTCTCTTTTGCAATCTCTCCAGCAACTTCAACTGCGCCGGAAGAATGTGGAAGCGAGTCAGCGAACCCGTGCGTCAACAAAGCTAAAGCTTTGCCTCTCAAAGTCATAGCAATCTTCGTAATCCTCATTGCAAGCATGATTGGTGTTGGAGCTCCTCTCTTTAGCCGTAACGTTTCGTTCCTCCAACCAGACGGAAACATCTTCACTATCATTAAGTGTTTCGCCTCCGGGATCATCCTTGGAACCGGTTTTATGCACGTTTTACCTGATTCTTTCGAAATGTTGTCATCTATATGTCTTGAAGAGAACCCGTGGCATAAATTTCCTTTCTCCGGATTTCTCGCTATGTTATCGGGTCTAATCACTCTAGCCATTGACTCCATGGCCACGAGCCTATACACCAGCAAGAACGCAGTTGGTATCATGCCCCATGGTCATGGTCATGGTCACGGCCCCGCAAATGATGTTACCTTACCAATAAAAGAAGATGATTCGTCAAATGCACAGCTCTTGCGATACCGAGTCATTGCCATGGTTCGTACGCACATATATACATACCGAATATCATTGTATTTTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000302 GO:0003674 GO:0005215 GO:0005381 GO:0005385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006829 GO:0006950 GO:0006979 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0012505 GO:0015075 GO:0015318 GO:0015675 GO:0015691 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0031410 GO:0031982 GO:0031984 GO:0032870 GO:0033554 GO:0034220 GO:0034599 GO:0034614 GO:0034755 GO:0035690 GO:0042221 GO:0042493 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0055085 GO:0070838 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0071577 GO:0071731 GO:0071732 GO:0071944 GO:0072509 GO:0072511 GO:0097366 GO:0097708 GO:0098655 GO:0098660 GO:0098662 GO:0098791 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

211

Amino Acids

22.84

Weight (kDa)

7.73

Isoelectric Point (pI)

42.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zip	PF02535	50 - 344	5.5e-84	ZIP Zinc transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007669)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31260 AT4G19690 AT4G19690
fragaria_vesca	FvH4_3g12020
malus_domestica	MD05G1255500.v1.1
prunus_persica	Prupe.4G108400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0019701 RchiOBHm_Chr5g0019711
rosa_laevigata	RLG00000032462 RLG00000032463
rosa_multiflora	Rmu_sc0003325.1_g000008 Rmu_ssc0000062.1_g000007 Rmu_ssc0000062.1_g000017
rosa_roxburghii	Rroxscaffold_1G00058400
rosa_rugosa	Rorug05G0052700 Rorug05G0053300
rosa_samantha	Rh5AG143700 Rh5BG142200 Rh5BG142600 Rh5CG153900 Rh5CG154000 Rh5DG142600 Rh5DG142700
rosa_wichuraiana	Rw5G012720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	386
AciI	CCGC	1 cut(s)	510
AclI	AACGTT	1 cut(s)	225
AclWI	GGATC	1 cut(s)	293
AcoI	YGGCCR	1 cut(s)	438
AcsI	RAATTY	2 cut(s)	10, 374
AfaI	GTAC	2 cut(s)	45, 595
AfiI	CCNNNNNNNGG	1 cut(s)	386
AgeI	ACCGGT	1 cut(s)	299
AgsI	TTSAA	3 cut(s)	9, 84, 356
AluBI	AGCT	4 cut(s)	137, 143, 206, 562
AluI	AGCT	4 cut(s)	137, 143, 206, 562
Alw21I	GWGCWC	1 cut(s)	208
Alw26I	GTCTC	1 cut(s)	61
AlwI	GGATC	1 cut(s)	293
Aor13HI	TCCGGA	1 cut(s)	386
AoxI	GGCC	2 cut(s)	438, 505
ApoI	RAATTY	2 cut(s)	10, 374
AsiGI	ACCGGT	1 cut(s)	299
AspLEI	GCGC	1 cut(s)	91
AspS9I	GGNCC	1 cut(s)	506
AsuC2I	CCSGG	1 cut(s)	283
AsuII	TTCGAA	1 cut(s)	330
BalI	TGGCCA	1 cut(s)	440
BanII	GRGCYC	1 cut(s)	208
BauI	CACGAG	1 cut(s)	442
Bbv12I	GWGCWC	1 cut(s)	208
BceAI	ACGGC	2 cut(s)	204, 520
BcnI	CCSGG	1 cut(s)	283
BcoDI	GTCTC	1 cut(s)	61
BfaI	CTAG	1 cut(s)	422
Bme1390I	CCNGG	1 cut(s)	283
BmgT120I	GGNCC	1 cut(s)	506
BmiI	GGNNCC	2 cut(s)	298, 508
BmrFI	CCNGG	1 cut(s)	283
BplI	GAGNNNNNCTC	2 cut(s)	195, 227
BpmI	CTGGAG	1 cut(s)	57
Bpu14I	TTCGAA	1 cut(s)	330
BpuMI	CCSGG	1 cut(s)	283
BsaJI	CCNNGG	5 cut(s)	292, 365, 435, 484, 585
BsaWI	WCCGGW	2 cut(s)	299, 386
Bsc4I	CCNNNNNNNGG	1 cut(s)	386
Bse118I	RCCGGY	1 cut(s)	299
Bse3DI	GCAATG	2 cut(s)	180, 579
BseAI	TCCGGA	1 cut(s)	386
BseDI	CCNNGG	5 cut(s)	292, 365, 435, 484, 585
BseGI	GGATG	1 cut(s)	288
BseLI	CCNNNNNNNGG	1 cut(s)	386
BseMI	GCAATG	2 cut(s)	180, 579
BseRI	GAGGAG	1 cut(s)	198
BshFI	GGCC	2 cut(s)	440, 507
BshTI	ACCGGT	1 cut(s)	299
BsiHKAI	GWGCWC	1 cut(s)	208
BsiSI	CCGG	4 cut(s)	92, 282, 300, 387
BsiWI	CGTACG	1 cut(s)	593
BslI	CCNNNNNNNGG	1 cut(s)	386
BsmAI	GTCTC	1 cut(s)	61
BsnI	GGCC	2 cut(s)	440, 507
Bsp119I	TTCGAA	1 cut(s)	330
Bsp1286I	GDGCHC	1 cut(s)	208
Bsp13I	TCCGGA	1 cut(s)	386
Bsp143I	GATC	1 cut(s)	285
Bsp19I	CCATGG	3 cut(s)	435, 484, 585
BspACI	CCGC	1 cut(s)	510
BspANI	GGCC	2 cut(s)	440, 507
BspEI	TCCGGA	1 cut(s)	386
BspHI	TCATGA	1 cut(s)	24
BspLI	GGNNCC	2 cut(s)	298, 508
BspPI	GGATC	1 cut(s)	293
BspT104I	TTCGAA	1 cut(s)	330
BsrDI	GCAATG	2 cut(s)	180, 579
BsrFI	RCCGGY	1 cut(s)	299
BssAI	RCCGGY	1 cut(s)	299
BssECI	CCNNGG	5 cut(s)	292, 365, 435, 484, 585
BssMI	GATC	1 cut(s)	285
BssSI	CACGAG	1 cut(s)	442
BssT1I	CCWWGG	4 cut(s)	292, 435, 484, 585
Bst2BI	CACGAG	1 cut(s)	442
Bst6I	CTCTTC	1 cut(s)	351
BstBI	TTCGAA	1 cut(s)	330
BstC8I	GCNNGC	1 cut(s)	187
BstDSI	CCRYGG	4 cut(s)	365, 435, 484, 585
BstF5I	GGATG	1 cut(s)	288
BstHHI	GCGC	1 cut(s)	91
BstKTI	GATC	1 cut(s)	288
BstMAI	GTCTC	1 cut(s)	61
BstMBI	GATC	1 cut(s)	285
BstSCI	CCNGG	1 cut(s)	281
BstXI	CCANNNNNNTGG	1 cut(s)	491
BsuRI	GGCC	2 cut(s)	440, 507
BtgI	CCRYGG	4 cut(s)	365, 435, 484, 585
BtsCI	GGATG	1 cut(s)	288
Cac8I	GCNNGC	1 cut(s)	187
CciI	TCATGA	1 cut(s)	24
CfoI	GCGC	1 cut(s)	91
Cfr10I	RCCGGY	1 cut(s)	299
Cfr13I	GGNCC	1 cut(s)	506
CseI	GACGC	1 cut(s)	115
Csp6I	GTAC	2 cut(s)	44, 594
CspAI	ACCGGT	1 cut(s)	299
CviAII	CATG	8 cut(s)	25, 190, 436, 478, 485, 491, 497, 586
CviQI	GTAC	2 cut(s)	44, 594
DpnI	GATC	1 cut(s)	287
DpnII	GATC	1 cut(s)	285
DraI	TTTAAA	1 cut(s)	631
EaeI	YGGCCR	1 cut(s)	438
Eam1104I	CTCTTC	1 cut(s)	351
EarI	CTCTTC	1 cut(s)	351
Ecl136II	GAGCTC	1 cut(s)	206
Eco130I	CCWWGG	4 cut(s)	292, 435, 484, 585
Eco24I	GRGCYC	1 cut(s)	208
Eco53kI	GAGCTC	1 cut(s)	206
EcoICRI	GAGCTC	1 cut(s)	206
EcoT14I	CCWWGG	4 cut(s)	292, 435, 484, 585
EcoT38I	GRGCYC	1 cut(s)	208
ErhI	CCWWGG	4 cut(s)	292, 435, 484, 585
FaeI	CATG	8 cut(s)	28, 193, 439, 481, 488, 494, 500, 589
FatI	CATG	8 cut(s)	24, 189, 435, 477, 484, 490, 496, 585
FauI	CCCGC	1 cut(s)	517
FokI	GGATG	1 cut(s)	275
FriOI	GRGCYC	1 cut(s)	208
FspBI	CTAG	1 cut(s)	422
GlaI	GCGC	1 cut(s)	90
GsuI	CTGGAG	1 cut(s)	57
HaeIII	GGCC	2 cut(s)	440, 507
HapII	CCGG	4 cut(s)	92, 282, 300, 387
HgaI	GACGC	1 cut(s)	115
HhaI	GCGC	1 cut(s)	91
Hin1II	CATG	8 cut(s)	28, 193, 439, 481, 488, 494, 500, 589
Hin6I	GCGC	1 cut(s)	89
HinP1I	GCGC	1 cut(s)	89
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HindIII	AAGCTT	1 cut(s)	141
HinfI	GANTC	5 cut(s)	110, 323, 431, 545, 576
HpaII	CCGG	4 cut(s)	92, 282, 300, 387
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188III	TCNNGA	3 cut(s)	25, 353, 387
Hpy8I	GTNNAC	1 cut(s)	130
HpyCH4IV	ACGT	2 cut(s)	225, 312
HpyCH4V	TGCA	4 cut(s)	65, 185, 310, 557
HpySE526I	ACGT	2 cut(s)	225, 312
Hsp92II	CATG	8 cut(s)	28, 193, 439, 481, 488, 494, 500, 589
HspAI	GCGC	1 cut(s)	89
Kpn2I	TCCGGA	1 cut(s)	386
Kzo9I	GATC	1 cut(s)	285
LmnI	GCTCC	2 cut(s)	203, 211
LpnPI	CCDG	8 cut(s)	87, 105, 255, 295, 313, 333, 400, 469
MaeI	CTAG	1 cut(s)	422
MaeII	ACGT	2 cut(s)	225, 312
MaeIII	GTNAC	3 cut(s)	221, 500, 520
MalI	GATC	1 cut(s)	287
MboI	GATC	1 cut(s)	285
MboII	GAAGA	6 cut(s)	28, 107, 160, 247, 368, 551
MhlI	GDGCHC	1 cut(s)	208
MlsI	TGGCCA	1 cut(s)	440
MluCI	AATT	2 cut(s)	10, 374
MluNI	TGGCCA	1 cut(s)	440
MlyI	GAGTC	3 cut(s)	119, 425, 585
MmeI	TCCRAC	2 cut(s)	181, 262
MnlI	CCTC	6 cut(s)	50, 159, 188, 219, 245, 289
Mox20I	TGGCCA	1 cut(s)	440
MroI	TCCGGA	1 cut(s)	386
MscI	TGGCCA	1 cut(s)	440
MseI	TTAA	2 cut(s)	267, 630
MslI	CAYNNNNRTG	4 cut(s)	346, 489, 495, 584
Msp20I	TGGCCA	1 cut(s)	440
MspI	CCGG	4 cut(s)	92, 282, 300, 387
MspR9I	CCNGG	1 cut(s)	283
NciI	CCSGG	1 cut(s)	283
NcoI	CCATGG	3 cut(s)	435, 484, 585
NdeII	GATC	1 cut(s)	285
NlaIII	CATG	8 cut(s)	28, 193, 439, 481, 488, 494, 500, 589
NlaIV	GGNNCC	2 cut(s)	298, 508
NmuCI	GTSAC	1 cut(s)	500
NspV	TTCGAA	1 cut(s)	330
PagI	TCATGA	1 cut(s)	24
PfeI	GAWTC	2 cut(s)	323, 545
Pfl23II	CGTACG	1 cut(s)	593
PfoI	TCCNGGA	1 cut(s)	281
PinAI	ACCGGT	1 cut(s)	299
PleI	GAGTC	3 cut(s)	118, 425, 584
PpsI	GAGTC	3 cut(s)	118, 425, 584
Psp124BI	GAGCTC	1 cut(s)	208
Psp1406I	AACGTT	1 cut(s)	225
PspLI	CGTACG	1 cut(s)	593
PspN4I	GGNNCC	2 cut(s)	298, 508
PspPI	GGNCC	1 cut(s)	506
RsaI	GTAC	2 cut(s)	45, 595
RsaNI	GTAC	2 cut(s)	44, 594
RseI	CAYNNNNRTG	4 cut(s)	346, 489, 495, 584
SacI	GAGCTC	1 cut(s)	208
SaqAI	TTAA	2 cut(s)	267, 630
Sau3AI	GATC	1 cut(s)	285
Sau96I	GGNCC	1 cut(s)	506
SchI	GAGTC	3 cut(s)	119, 425, 585
ScrFI	CCNGG	1 cut(s)	283
SduI	GDGCHC	1 cut(s)	208
SetI	ASST	8 cut(s)	139, 145, 208, 228, 315, 322, 527, 564
SfuI	TTCGAA	1 cut(s)	330
SmiMI	CAYNNNNRTG	4 cut(s)	346, 489, 495, 584
Sse9I	AATT	2 cut(s)	10, 374
SsiI	CCGC	1 cut(s)	510
SspMI	CTAG	1 cut(s)	422
SstI	GAGCTC	1 cut(s)	208
StyD4I	CCNGG	1 cut(s)	281
StyI	CCWWGG	4 cut(s)	292, 435, 484, 585
TaiI	ACGT	2 cut(s)	228, 315
TaqI	TCGA	1 cut(s)	330
TasI	AATT	2 cut(s)	10, 374
TfiI	GAWTC	2 cut(s)	323, 545
Tru1I	TTAA	2 cut(s)	267, 630
Tru9I	TTAA	2 cut(s)	267, 630
TseFI	GTSAC	1 cut(s)	500
Tsp45I	GTSAC	1 cut(s)	500
TspDTI	ATGAA	1 cut(s)	41
TspGWI	ACGGA	1 cut(s)	261
XapI	RAATTY	2 cut(s)	10, 374
XcmI	CCANNNNNNNNNTGG	1 cut(s)	433
XspI	CTAG	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.