Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003325.1

Orthogroup ID

OG0007669

Physical Location & Seq

Genomic Coordinates Reverse (-)

32625 .. 34142

Gene Structure 1518 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003325.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

atggcccctactacttcacttttcaaagtgctcctcccaatcttcttcataatcctcgtctcagcaataattcctcaagctcattcgatatccgagagtgatgaatgccagtctgaaactaccaactcctgccacgacaaggcaggagctgtgcccctcaaaatcatagccattacttcaatcctggtcaccagcatgatcggtgtgtccttgccactcgtcactcgcaccatacccgcattgcaccccgatcgagacatattcgtggttgtcaagtgctttgccggtggcattattcttgccacggggttcatgcacgttttgccagactcttttgacatgttgtcctcgaattgtttggatgagaagccgtggcacaagttccctttcactgggtttgttgctatgttgtctgctattgtgactatgatggtggactccatggctactagcatatacagcacgagatcaaaagccggagttaaagccggagttaaccccgatgctgatggtgttgctgcagccattgagggagatcaagagatggctgtggcgagtggcggccatggacattttcattcacacaatcatcaggtcaaaggaggaagcgagtcacagttgtcacgctatcgcgttgttgccatggtattggaactgggaattattgttcactcaattgttatagggctttctcttggagcttcaaacaatacttgcaccattaaaggtcttgtagctgccctttgcttccatcaaatgtttgaaggcatgggccttggtggttgcattctccaggctgagttcaagttcatgaagaaggtagtactggtgttcttcttctcagcaacaaccccatctggaattgcactgggaatggccctgtcaaaaatgtacaaagaaaacagtccaagtgcattagtgacagtaggactgctgaatgcttcttcagctgggctcctcatctacatggctttggttgatcttctctctgctgacttcatgggtccaaagttgcaacgcagcatcaagctccagatcaagtcctacatggcggttcttttgggtgctggtggcatgtctctgttggcaaagtgggcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000302 GO:0003674 GO:0005215 GO:0005381 GO:0005385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006829 GO:0006950 GO:0006979 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0012505 GO:0015075 GO:0015318 GO:0015675 GO:0015691 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0031410 GO:0031982 GO:0031984 GO:0032870 GO:0033554 GO:0034220 GO:0034599 GO:0034614 GO:0034755 GO:0035690 GO:0042221 GO:0042493 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0055085 GO:0070838 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0071577 GO:0071731 GO:0071732 GO:0071944 GO:0072509 GO:0072511 GO:0097366 GO:0097708 GO:0098655 GO:0098660 GO:0098662 GO:0098791 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

366

Amino Acids

38.79

Weight (kDa)

7.67

Isoelectric Point (pI)

36.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007669)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31260 AT4G19690 AT4G19690
fragaria_vesca	FvH4_3g12020
malus_domestica	MD05G1255500.v1.1
prunus_persica	Prupe.4G108400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0019701 RchiOBHm_Chr5g0019711
rosa_laevigata	RLG00000032462 RLG00000032463
rosa_multiflora	Rmu_sc0003325.1_g000008 Rmu_ssc0000062.1_g000007 Rmu_ssc0000062.1_g000017
rosa_roxburghii	Rroxscaffold_1G00058400
rosa_rugosa	Rorug05G0052700 Rorug05G0053300
rosa_samantha	Rh5AG143700 Rh5BG142200 Rh5BG142600 Rh5CG153900 Rh5CG154000 Rh5DG142600 Rh5DG142700
rosa_wichuraiana	Rw5G012720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	633
AciI	CCGC	3 cut(s)	237, 561, 1052
AcoI	YGGCCR	1 cut(s)	562
AcuI	CTGAAG	1 cut(s)	930
AfaI	GTAC	2 cut(s)	825, 893
AfiI	CCNNNNNNNGG	2 cut(s)	139, 392
AflIII	ACRYGT	1 cut(s)	339
AgsI	TTSAA	5 cut(s)	25, 180, 705, 764, 805
AhdI	GACNNNNNGTC	1 cut(s)	343
AjnI	CCWGG	2 cut(s)	183, 792
AloI	GAACNNNNNNTCC	2 cut(s)	651, 683
AluBI	AGCT	6 cut(s)	80, 149, 701, 737, 950, 1030
AluI	AGCT	6 cut(s)	80, 149, 701, 737, 950, 1030
Alw21I	GWGCWC	1 cut(s)	33
Alw26I	GTCTC	3 cut(s)	64, 249, 1083
AlwNI	CAGNNNCTG	1 cut(s)	149
AoxI	GGCC	4 cut(s)	3, 562, 772, 876
ApeKI	GCWGC	4 cut(s)	518, 521, 737, 1020
AspS9I	GGNCC	4 cut(s)	4, 772, 877, 1004
AsuHPI	GGTGA	1 cut(s)	181
AvaII	GGWCC	1 cut(s)	1004
BaeGI	GKGCMC	1 cut(s)	156
BanII	GRGCYC	1 cut(s)	957
BauI	CACGAG	1 cut(s)	463
Bbv12I	GWGCWC	1 cut(s)	33
BbvI	GCAGC	4 cut(s)	505, 533, 724, 1032
BccI	CCATC	5 cut(s)	424, 503, 538, 759, 862
BceAI	ACGGC	1 cut(s)	355
BcgI	CGANNNNNNTGC	2 cut(s)	233, 267
BciT130I	CCWGG	2 cut(s)	185, 794
BcoDI	GTCTC	3 cut(s)	64, 249, 1083
BfaI	CTAG	1 cut(s)	450
BfmI	CTRYAG	1 cut(s)	519
BisI	GCNGC	5 cut(s)	519, 522, 562, 738, 1021
BlsI	GCNGC	5 cut(s)	520, 523, 563, 739, 1022
BmcAI	AGTACT	1 cut(s)	825
Bme1390I	CCNGG	2 cut(s)	185, 794
Bme18I	GGWCC	1 cut(s)	1004
BmeRI	GACNNNNNGTC	1 cut(s)	343
BmgT120I	GGNCC	4 cut(s)	4, 772, 877, 1004
BmiI	GGNNCC	3 cut(s)	6, 956, 1005
BmrFI	CCNGG	2 cut(s)	185, 794
BmrI	ACTGGG	3 cut(s)	402, 665, 878
BmsI	GCATC	2 cut(s)	493, 1032
BmuI	ACTGGG	3 cut(s)	402, 665, 878
BpmI	CTGGAG	2 cut(s)	776, 1016
BpuEI	CTTGAG	1 cut(s)	60
BsaJI	CCNNGG	6 cut(s)	303, 371, 441, 565, 642, 775
Bsc4I	CCNNNNNNNGG	2 cut(s)	139, 392
Bse118I	RCCGGY	1 cut(s)	284
Bse1I	ACTGG	5 cut(s)	109, 397, 660, 831, 873
Bse3DI	GCAATG	1 cut(s)	239
BseBI	CCWGG	2 cut(s)	185, 794
BseDI	CCNNGG	6 cut(s)	303, 371, 441, 565, 642, 775
BseGI	GGATG	1 cut(s)	367
BseLI	CCNNNNNNNGG	2 cut(s)	139, 392
BseMI	GCAATG	1 cut(s)	239
BseMII	CTCAG	3 cut(s)	75, 789, 855
BseNI	ACTGG	5 cut(s)	109, 397, 660, 831, 873
BseRI	GAGGAG	2 cut(s)	23, 947
BseSI	GKGCMC	1 cut(s)	156
BseXI	GCAGC	4 cut(s)	505, 533, 724, 1032
BseYI	CCCAGC	1 cut(s)	950
Bsh1236I	CGCG	1 cut(s)	633
Bsh1285I	CGRYCG	1 cut(s)	253
BshFI	GGCC	4 cut(s)	5, 564, 774, 878
BsiEI	CGRYCG	1 cut(s)	253
BsiHKAI	GWGCWC	1 cut(s)	33
BsiSI	CCGG	3 cut(s)	285, 477, 489
BslI	CCNNNNNNNGG	2 cut(s)	139, 392
BsmAI	GTCTC	3 cut(s)	64, 249, 1083
BsmBI	CGTCTC	1 cut(s)	64
BsmI	GAATGC	3 cut(s)	110, 786, 943
BsnI	GGCC	4 cut(s)	5, 564, 774, 878
Bsp1286I	GDGCHC	3 cut(s)	33, 156, 957
Bsp1407I	TGTACA	1 cut(s)	891
Bsp143I	GATC	6 cut(s)	198, 250, 467, 535, 979, 1035
Bsp19I	CCATGG	3 cut(s)	441, 565, 642
BspACI	CCGC	3 cut(s)	237, 561, 1052
BspANI	GGCC	4 cut(s)	5, 564, 774, 878
BspCNI	CTCAG	3 cut(s)	74, 790, 854
BspFNI	CGCG	1 cut(s)	633
BspHI	TCATGA	1 cut(s)	810
BspLI	GGNNCC	3 cut(s)	6, 956, 1005
BspMAI	CTGCAG	1 cut(s)	523
BsrDI	GCAATG	1 cut(s)	239
BsrFI	RCCGGY	1 cut(s)	284
BsrGI	TGTACA	1 cut(s)	891
BsrI	ACTGG	5 cut(s)	109, 397, 660, 831, 873
BssAI	RCCGGY	1 cut(s)	284
BssECI	CCNNGG	6 cut(s)	303, 371, 441, 565, 642, 775
BssMI	GATC	6 cut(s)	198, 250, 467, 535, 979, 1035
BssSI	CACGAG	1 cut(s)	463
BssT1I	CCWWGG	4 cut(s)	441, 565, 642, 775
Bst2BI	CACGAG	1 cut(s)	463
Bst2UI	CCWGG	2 cut(s)	185, 794
Bst4CI	ACNGT	3 cut(s)	618, 905, 925
BstAPI	GCANNNNNTGC	1 cut(s)	322
BstAUI	TGTACA	1 cut(s)	891
BstDEI	CTNAG	3 cut(s)	61, 798, 841
BstDSI	CCRYGG	5 cut(s)	303, 371, 441, 565, 642
BstEII	GGTNACC	1 cut(s)	187
BstF5I	GGATG	1 cut(s)	367
BstFNI	CGCG	1 cut(s)	633
BstKTI	GATC	6 cut(s)	201, 253, 470, 538, 982, 1038
BstMAI	GTCTC	3 cut(s)	64, 249, 1083
BstMBI	GATC	6 cut(s)	198, 250, 467, 535, 979, 1035
BstMCI	CGRYCG	1 cut(s)	253
BstMWI	GCNNNNNNNGC	4 cut(s)	322, 459, 947, 1094
BstNI	CCWGG	2 cut(s)	185, 794
BstNSI	RCATGY	2 cut(s)	343, 1078
BstPI	GGTNACC	1 cut(s)	187
BstSCI	CCNGG	2 cut(s)	183, 792
BstSFI	CTRYAG	1 cut(s)	519
BstSLI	GKGCMC	1 cut(s)	156
BstUI	CGCG	1 cut(s)	633
BstV1I	GCAGC	4 cut(s)	505, 533, 724, 1032
BstXI	CCANNNNNNTGG	1 cut(s)	649
BsuRI	GGCC	4 cut(s)	5, 564, 774, 878
BtgI	CCRYGG	5 cut(s)	303, 371, 441, 565, 642
BtsCI	GGATG	1 cut(s)	367
BtsIMutI	CAGTG	2 cut(s)	390, 866
CaiI	CAGNNNCTG	1 cut(s)	149
CciI	TCATGA	1 cut(s)	810
Cfr10I	RCCGGY	1 cut(s)	284
Cfr13I	GGNCC	4 cut(s)	4, 772, 877, 1004
Csp6I	GTAC	2 cut(s)	824, 892
CviQI	GTAC	2 cut(s)	824, 892
DdeI	CTNAG	3 cut(s)	61, 798, 841
DpnI	GATC	6 cut(s)	200, 252, 469, 537, 981, 1037
DpnII	GATC	6 cut(s)	198, 250, 467, 535, 979, 1035
DriI	GACNNNNNGTC	1 cut(s)	343
EaeI	YGGCCR	1 cut(s)	562
Eam1105I	GACNNNNNGTC	1 cut(s)	343
Eco130I	CCWWGG	4 cut(s)	441, 565, 642, 775
Eco24I	GRGCYC	1 cut(s)	957
Eco32I	GATATC	1 cut(s)	90
Eco47I	GGWCC	1 cut(s)	1004
Eco57I	CTGAAG	1 cut(s)	930
Eco91I	GGTNACC	1 cut(s)	187
EcoO65I	GGTNACC	1 cut(s)	187
EcoRII	CCWGG	2 cut(s)	183, 792
EcoRV	GATATC	1 cut(s)	90
EcoT14I	CCWWGG	4 cut(s)	441, 565, 642, 775
EcoT38I	GRGCYC	1 cut(s)	957
ErhI	CCWWGG	4 cut(s)	441, 565, 642, 775
Esp3I	CGTCTC	1 cut(s)	64
FauI	CCCGC	1 cut(s)	244
Fnu4HI	GCNGC	5 cut(s)	519, 522, 562, 738, 1021
FokI	GGATG	1 cut(s)	374
FriOI	GRGCYC	1 cut(s)	957
Fsp4HI	GCNGC	5 cut(s)	519, 522, 562, 738, 1021
FspBI	CTAG	1 cut(s)	450
GluI	GCNGC	5 cut(s)	519, 522, 562, 738, 1021
GsaI	CCCAGC	1 cut(s)	954
GsuI	CTGGAG	2 cut(s)	776, 1016
HaeIII	GGCC	4 cut(s)	5, 564, 774, 878
HapII	CCGG	3 cut(s)	285, 477, 489
HincII	GTYRAC	1 cut(s)	496
HindII	GTYRAC	1 cut(s)	496
HinfI	GANTC	3 cut(s)	329, 437, 611
HpaI	GTTAAC	1 cut(s)	496
HpaII	CCGG	3 cut(s)	285, 477, 489
HphI	GGTGA	1 cut(s)	181
Hpy166II	GTNNAC	3 cut(s)	436, 496, 670
Hpy188I	TCNGA	2 cut(s)	94, 115
Hpy188III	TCNNGA	5 cut(s)	254, 539, 811, 858, 1033
Hpy8I	GTNNAC	3 cut(s)	436, 496, 670
HpyAV	CCTTC	2 cut(s)	758, 811
HpyCH4III	ACNGT	3 cut(s)	618, 905, 925
HpyCH4IV	ACGT	1 cut(s)	318
HpyCH4V	TGCA	8 cut(s)	244, 316, 521, 717, 786, 866, 914, 1015
HpyF10VI	GCNNNNNNNGC	4 cut(s)	322, 459, 947, 1094
HpyF3I	CTNAG	3 cut(s)	61, 798, 841
HpySE526I	ACGT	1 cut(s)	318
KspAI	GTTAAC	1 cut(s)	496
Kzo9I	GATC	6 cut(s)	198, 250, 467, 535, 979, 1035
LmnI	GCTCC	5 cut(s)	36, 146, 698, 960, 1035
Lsp1109I	GCAGC	4 cut(s)	505, 533, 724, 1032
LweI	GCATC	2 cut(s)	493, 1032
MaeI	CTAG	1 cut(s)	450
MaeII	ACGT	1 cut(s)	318
MaeIII	GTNAC	6 cut(s)	187, 220, 421, 612, 621, 919
MalI	GATC	6 cut(s)	200, 252, 469, 537, 981, 1037
MboI	GATC	6 cut(s)	198, 250, 467, 535, 979, 1035
MboII	GAAGA	7 cut(s)	34, 37, 826, 826, 829, 936, 974
MfeI	CAATTG	1 cut(s)	675
MhlI	GDGCHC	3 cut(s)	33, 156, 957
MluCI	AATT	5 cut(s)	69, 352, 660, 675, 861
MlyI	GAGTC	3 cut(s)	323, 431, 620
MnlI	CCTC	8 cut(s)	44, 65, 84, 167, 358, 523, 596, 968
MseI	TTAA	4 cut(s)	483, 495, 723, 1099
MslI	CAYNNNNRTG	3 cut(s)	194, 263, 965
MspA1I	CMGCKG	1 cut(s)	950
MspI	CCGG	3 cut(s)	285, 477, 489
MspR9I	CCNGG	2 cut(s)	185, 794
MunI	CAATTG	1 cut(s)	675
Mva1269I	GAATGC	3 cut(s)	110, 786, 943
MvaI	CCWGG	2 cut(s)	185, 794
MvnI	CGCG	1 cut(s)	633
MwoI	GCNNNNNNNGC	4 cut(s)	322, 459, 947, 1094
NcoI	CCATGG	3 cut(s)	441, 565, 642
NdeII	GATC	6 cut(s)	198, 250, 467, 535, 979, 1035
NlaIV	GGNNCC	3 cut(s)	6, 956, 1005
NmuCI	GTSAC	6 cut(s)	187, 220, 421, 612, 621, 919
NspI	RCATGY	2 cut(s)	343, 1078
PagI	TCATGA	1 cut(s)	810
PciI	ACATGT	1 cut(s)	339
PctI	GAATGC	3 cut(s)	110, 786, 943
PkrI	GCNGC	5 cut(s)	520, 523, 563, 739, 1022
Ple19I	CGATCG	1 cut(s)	253
PleI	GAGTC	3 cut(s)	323, 431, 619
PpsI	GAGTC	3 cut(s)	323, 431, 619
PscI	ACATGT	1 cut(s)	339
Psp6I	CCWGG	2 cut(s)	183, 792
PspEI	GGTNACC	1 cut(s)	187
PspFI	CCCAGC	1 cut(s)	950
PspGI	CCWGG	2 cut(s)	183, 792
PspN4I	GGNNCC	3 cut(s)	6, 956, 1005
PspPI	GGNCC	4 cut(s)	4, 772, 877, 1004
PstI	CTGCAG	1 cut(s)	523
PstNI	CAGNNNCTG	1 cut(s)	149
PvuI	CGATCG	1 cut(s)	253
PvuII	CAGCTG	1 cut(s)	950
RsaI	GTAC	2 cut(s)	825, 893
RsaNI	GTAC	2 cut(s)	824, 892
RseI	CAYNNNNRTG	3 cut(s)	194, 263, 965
SaqAI	TTAA	4 cut(s)	483, 495, 723, 1099
SatI	GCNGC	5 cut(s)	519, 522, 562, 738, 1021
Sau3AI	GATC	6 cut(s)	198, 250, 467, 535, 979, 1035
Sau96I	GGNCC	4 cut(s)	4, 772, 877, 1004
ScaI	AGTACT	1 cut(s)	825
SchI	GAGTC	3 cut(s)	323, 431, 620
ScrFI	CCNGG	2 cut(s)	185, 794
SduI	GDGCHC	3 cut(s)	33, 156, 957
SfaNI	GCATC	2 cut(s)	493, 1032
SfcI	CTRYAG	1 cut(s)	519
SinI	GGWCC	1 cut(s)	1004
SmiMI	CAYNNNNRTG	3 cut(s)	194, 263, 965
SmlI	CTYRAG	1 cut(s)	75
SmoI	CTYRAG	1 cut(s)	75
Sse9I	AATT	5 cut(s)	69, 352, 660, 675, 861
SsiI	CCGC	3 cut(s)	237, 561, 1052
SspMI	CTAG	1 cut(s)	450
StyD4I	CCNGG	2 cut(s)	183, 792
StyI	CCWWGG	4 cut(s)	441, 565, 642, 775
TaaI	ACNGT	3 cut(s)	618, 905, 925
TaiI	ACGT	1 cut(s)	321
TaqI	TCGA	3 cut(s)	86, 253, 350
TasI	AATT	5 cut(s)	69, 352, 660, 675, 861
TatI	WGTACW	2 cut(s)	823, 891
TauI	GCSGC	1 cut(s)	564
Tru1I	TTAA	4 cut(s)	483, 495, 723, 1099
Tru9I	TTAA	4 cut(s)	483, 495, 723, 1099
TscAI	CASTG	2 cut(s)	397, 873
TseFI	GTSAC	6 cut(s)	187, 220, 421, 612, 621, 919
TseI	GCWGC	4 cut(s)	518, 521, 737, 1020
Tsp45I	GTSAC	6 cut(s)	187, 220, 421, 612, 621, 919
TspDTI	ATGAA	7 cut(s)	37, 117, 301, 566, 799, 827, 988
TspRI	CASTG	2 cut(s)	397, 873
VpaK11BI	GGWCC	1 cut(s)	1004
XceI	RCATGY	2 cut(s)	343, 1078
XspI	CTAG	1 cut(s)	450
ZrmI	AGTACT	1 cut(s)	825

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.