Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0007669

Physical Location & Seq

Genomic Coordinates Reverse (-)

14578770 .. 14580471

Gene Structure 1702 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG142600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGCCACTACTACTTCACTTTCCAAAGTACTCCTCCCAATCTTCGTCATAATCCTCGTCTTCGCACTCATTCCTCAAGCTCATTCGCAATCCGAGAGTGATGAATGCGAGTCTGAAACTACCAACTCCTGCCACGACAAGGCAGGAGCTGTGCCACTCAAAATCATAGCCATTGCCTCAATCCTGGTCACCAGCATGATAGGTGTGTCCTTGCCACTCGTCAGTCGCACCATACCCGCCTTGCATCCCGATCGAGACATATTCGTGGTCGTCAAGTGCTTTGCCGGTGGCATTATTCTTGGCACGGGGTTCATGCACGTTTTGCCAGACTCTTTTGACATGTTGTCCTCGAATTGTTTGGATGAGAAGCCGTGGCACAAGTTCCCTTTCACTGGATTTTTTGCTATGTTGTCCGCTATTGTGACTATGATGGTGGACTCCATGGCTACTAGCATATACAGTAGGAGATCCAGAGCCGGAGTTAACCCCGACACTATTGGTGCTGCCGCCATTGAGGGAGATCAAGAGATGGCTGTGGCGGGTGGCGGACATGGACATTTTCTTTCACATGATCATCAAGACAAAGGAGGAAGCGAGCCACAGCTGTCACGCTATCGCGTTGTTGCCATGGTGTTGGAACTGGGAATTATTGTTCACTCGGTTGTTATCGGGCTTTCTCTTGGAGCTTCAAACAACACTTGCACCATTAAAGGTCTCGTAGCTGCCCTTTGCTTCCATCAAATGTTTGAAGGCATGGGCCTTGGTGGTTGCATTCTCCAGGCTGAGTATAAGTTCATGAAGAAGGCAATAATGGTGTTCTTCTTCTCAGCAACAACCCCATTTGGAATTGCACTGGGAATGGCCATTTCAAAAATGTACAAAGAAAACAGTCCAAGTGCATTAGTGACAGTAGGACTGCTGAATGCTTCTTCAGCTGGGCTCCTCATCTACATGGCTTTGGTTGATCTTCTGTCTGCTGACTTCATGGGTCCAAAGTTGCAACGCAGCATCAAGCTCCAGATCAAGTCTTACATGGCGGTTCTTTTGGGTGCCGGTGGCATGTCTCAGTTGGCAAAATGGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000302 GO:0003674 GO:0005215 GO:0005381 GO:0005385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006829 GO:0006950 GO:0006979 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0012505 GO:0015075 GO:0015318 GO:0015675 GO:0015691 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0031410 GO:0031982 GO:0031984 GO:0032870 GO:0033554 GO:0034220 GO:0034599 GO:0034614 GO:0034755 GO:0035690 GO:0042221 GO:0042493 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0055085 GO:0070838 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0071577 GO:0071731 GO:0071732 GO:0071944 GO:0072509 GO:0072511 GO:0097366 GO:0097708 GO:0098655 GO:0098660 GO:0098662 GO:0098791 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

361

Amino Acids

38.46

Weight (kDa)

6.82

Isoelectric Point (pI)

42.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zip	PF02535	52 - 357	3.5e-84	ZIP Zinc transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007669)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31260 AT4G19690 AT4G19690
fragaria_vesca	FvH4_3g12020
malus_domestica	MD05G1255500.v1.1
prunus_persica	Prupe.4G108400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0019701 RchiOBHm_Chr5g0019711
rosa_laevigata	RLG00000032462 RLG00000032463
rosa_multiflora	Rmu_sc0003325.1_g000008 Rmu_ssc0000062.1_g000007 Rmu_ssc0000062.1_g000017
rosa_roxburghii	Rroxscaffold_1G00058400
rosa_rugosa	Rorug05G0052700 Rorug05G0053300
rosa_samantha	Rh5AG143700 Rh5BG142200 Rh5BG142600 Rh5CG153900 Rh5CG154000 Rh5DG142600 Rh5DG142700
rosa_wichuraiana	Rw5G012720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1049
AccII	CGCG	1 cut(s)	618
AciI	CCGC	6 cut(s)	237, 414, 507, 539, 546, 1037
AclWI	GGATC	1 cut(s)	462
AcoI	YGGCCR	2 cut(s)	3, 861
AcuI	CTGAAG	1 cut(s)	915
AfaI	GTAC	2 cut(s)	30, 878
AfiI	CCNNNNNNNGG	2 cut(s)	139, 392
AflIII	ACRYGT	1 cut(s)	339
AgsI	TTSAA	3 cut(s)	690, 749, 870
AhdI	GACNNNNNGTC	1 cut(s)	343
AjnI	CCWGG	2 cut(s)	183, 777
AloI	GAACNNNNNNTCC	2 cut(s)	636, 668
AluBI	AGCT	7 cut(s)	80, 149, 604, 686, 722, 935, 1015
AluI	AGCT	7 cut(s)	80, 149, 604, 686, 722, 935, 1015
Alw26I	GTCTC	3 cut(s)	249, 719, 1068
AlwI	GGATC	1 cut(s)	462
AlwNI	CAGNNNCTG	1 cut(s)	149
AoxI	GGCC	3 cut(s)	3, 757, 861
ApeKI	GCWGC	3 cut(s)	503, 722, 1005
AspS9I	GGNCC	2 cut(s)	757, 989
AsuHPI	GGTGA	1 cut(s)	181
AvaII	GGWCC	1 cut(s)	989
BalI	TGGCCA	2 cut(s)	5, 863
BanI	GGYRCC	1 cut(s)	1049
BanII	GRGCYC	1 cut(s)	942
BbsI	GAAGAC	1 cut(s)	52
BbvI	GCAGC	3 cut(s)	490, 709, 1017
BccI	CCATC	3 cut(s)	424, 523, 744
BceAI	ACGGC	1 cut(s)	355
BcgI	CGANNNNNNTGC	2 cut(s)	233, 267
BciT130I	CCWGG	2 cut(s)	185, 779
BclI	TGATCA	1 cut(s)	571
BcoDI	GTCTC	3 cut(s)	249, 719, 1068
BfaI	CTAG	1 cut(s)	450
BisI	GCNGC	4 cut(s)	504, 507, 723, 1006
BlsI	GCNGC	4 cut(s)	505, 508, 724, 1007
BmcAI	AGTACT	1 cut(s)	30
Bme1390I	CCNGG	2 cut(s)	185, 779
Bme18I	GGWCC	1 cut(s)	989
BmeRI	GACNNNNNGTC	1 cut(s)	343
BmgT120I	GGNCC	2 cut(s)	757, 989
BmiI	GGNNCC	3 cut(s)	941, 990, 1051
BmrFI	CCNGG	2 cut(s)	185, 779
BmrI	ACTGGG	2 cut(s)	650, 863
BmsI	GCATC	2 cut(s)	253, 1017
BmuI	ACTGGG	2 cut(s)	650, 863
BpiI	GAAGAC	1 cut(s)	52
BpmI	CTGGAG	2 cut(s)	761, 1001
BpuEI	CTTGAG	1 cut(s)	60
BsaI	GGTCTC	1 cut(s)	719
BsaJI	CCNNGG	4 cut(s)	371, 441, 627, 760
Bsc4I	CCNNNNNNNGG	2 cut(s)	139, 392
Bse118I	RCCGGY	2 cut(s)	284, 1052
Bse1I	ACTGG	3 cut(s)	397, 645, 858
Bse3DI	GCAATG	1 cut(s)	171
BseBI	CCWGG	2 cut(s)	185, 779
BseDI	CCNNGG	4 cut(s)	371, 441, 627, 760
BseGI	GGATG	2 cut(s)	244, 367
BseLI	CCNNNNNNNGG	2 cut(s)	139, 392
BseMI	GCAATG	1 cut(s)	171
BseMII	CTCAG	3 cut(s)	774, 840, 1079
BseNI	ACTGG	3 cut(s)	397, 645, 858
BseRI	GAGGAG	2 cut(s)	23, 932
BseXI	GCAGC	3 cut(s)	490, 709, 1017
BseYI	CCCAGC	1 cut(s)	935
Bsh1236I	CGCG	1 cut(s)	618
Bsh1285I	CGRYCG	1 cut(s)	253
BshFI	GGCC	3 cut(s)	5, 759, 863
BshNI	GGYRCC	1 cut(s)	1049
BsiEI	CGRYCG	1 cut(s)	253
BsiSI	CCGG	3 cut(s)	285, 477, 1053
BslI	CCNNNNNNNGG	2 cut(s)	139, 392
BsmAI	GTCTC	3 cut(s)	249, 719, 1068
BsmI	GAATGC	3 cut(s)	110, 771, 928
BsnI	GGCC	3 cut(s)	5, 759, 863
Bso31I	GGTCTC	1 cut(s)	719
Bsp1286I	GDGCHC	1 cut(s)	942
Bsp1407I	TGTACA	1 cut(s)	876
Bsp143I	GATC	6 cut(s)	250, 467, 520, 571, 964, 1020
Bsp19I	CCATGG	2 cut(s)	441, 627
BspACI	CCGC	6 cut(s)	237, 414, 507, 539, 546, 1037
BspANI	GGCC	3 cut(s)	5, 759, 863
BspCNI	CTCAG	3 cut(s)	775, 839, 1078
BspFNI	CGCG	1 cut(s)	618
BspHI	TCATGA	1 cut(s)	795
BspLI	GGNNCC	3 cut(s)	941, 990, 1051
BspPI	GGATC	1 cut(s)	462
BspT107I	GGYRCC	1 cut(s)	1049
BspTNI	GGTCTC	1 cut(s)	719
BsrDI	GCAATG	1 cut(s)	171
BsrFI	RCCGGY	2 cut(s)	284, 1052
BsrGI	TGTACA	1 cut(s)	876
BsrI	ACTGG	3 cut(s)	397, 645, 858
BssAI	RCCGGY	2 cut(s)	284, 1052
BssECI	CCNNGG	4 cut(s)	371, 441, 627, 760
BssMI	GATC	6 cut(s)	250, 467, 520, 571, 964, 1020
BssT1I	CCWWGG	3 cut(s)	441, 627, 760
Bst2UI	CCWGG	2 cut(s)	185, 779
Bst4CI	ACNGT	3 cut(s)	461, 890, 910
BstAPI	GCANNNNNTGC	1 cut(s)	322
BstAUI	TGTACA	1 cut(s)	876
BstC8I	GCNNGC	1 cut(s)	596
BstDEI	CTNAG	3 cut(s)	783, 826, 1065
BstDSI	CCRYGG	3 cut(s)	371, 441, 627
BstEII	GGTNACC	1 cut(s)	187
BstF5I	GGATG	2 cut(s)	244, 367
BstFNI	CGCG	1 cut(s)	618
BstKTI	GATC	6 cut(s)	253, 470, 523, 574, 967, 1023
BstMAI	GTCTC	3 cut(s)	249, 719, 1068
BstMBI	GATC	6 cut(s)	250, 467, 520, 571, 964, 1020
BstMCI	CGRYCG	1 cut(s)	253
BstMWI	GCNNNNNNNGC	3 cut(s)	322, 932, 1079
BstNI	CCWGG	2 cut(s)	185, 779
BstNSI	RCATGY	2 cut(s)	343, 1063
BstPI	GGTNACC	1 cut(s)	187
BstSCI	CCNGG	2 cut(s)	183, 777
BstUI	CGCG	1 cut(s)	618
BstV1I	GCAGC	3 cut(s)	490, 709, 1017
BstV2I	GAAGAC	1 cut(s)	52
BstX2I	RGATCY	1 cut(s)	467
BstXI	CCANNNNNNTGG	1 cut(s)	634
BstYI	RGATCY	1 cut(s)	467
BsuRI	GGCC	3 cut(s)	5, 759, 863
BtgI	CCRYGG	3 cut(s)	371, 441, 627
BtsCI	GGATG	2 cut(s)	244, 367
BtsIMutI	CAGTG	2 cut(s)	390, 851
Cac8I	GCNNGC	1 cut(s)	596
CaiI	CAGNNNCTG	1 cut(s)	149
CciI	TCATGA	1 cut(s)	795
Cfr10I	RCCGGY	2 cut(s)	284, 1052
Cfr13I	GGNCC	2 cut(s)	757, 989
Csp6I	GTAC	2 cut(s)	29, 877
CviQI	GTAC	2 cut(s)	29, 877
DdeI	CTNAG	3 cut(s)	783, 826, 1065
DpnI	GATC	6 cut(s)	252, 469, 522, 573, 966, 1022
DpnII	GATC	6 cut(s)	250, 467, 520, 571, 964, 1020
DriI	GACNNNNNGTC	1 cut(s)	343
EaeI	YGGCCR	2 cut(s)	3, 861
Eam1105I	GACNNNNNGTC	1 cut(s)	343
EciI	GGCGGA	1 cut(s)	561
Eco130I	CCWWGG	3 cut(s)	441, 627, 760
Eco24I	GRGCYC	1 cut(s)	942
Eco31I	GGTCTC	1 cut(s)	719
Eco47I	GGWCC	1 cut(s)	989
Eco57I	CTGAAG	1 cut(s)	915
Eco91I	GGTNACC	1 cut(s)	187
EcoO65I	GGTNACC	1 cut(s)	187
EcoRII	CCWGG	2 cut(s)	183, 777
EcoT14I	CCWWGG	3 cut(s)	441, 627, 760
EcoT38I	GRGCYC	1 cut(s)	942
ErhI	CCWWGG	3 cut(s)	441, 627, 760
FauI	CCCGC	2 cut(s)	244, 532
FbaI	TGATCA	1 cut(s)	571
Fnu4HI	GCNGC	4 cut(s)	504, 507, 723, 1006
FokI	GGATG	2 cut(s)	231, 374
FriOI	GRGCYC	1 cut(s)	942
Fsp4HI	GCNGC	4 cut(s)	504, 507, 723, 1006
FspBI	CTAG	1 cut(s)	450
GluI	GCNGC	4 cut(s)	504, 507, 723, 1006
GsaI	CCCAGC	1 cut(s)	939
GsuI	CTGGAG	2 cut(s)	761, 1001
HaeIII	GGCC	3 cut(s)	5, 759, 863
HapII	CCGG	3 cut(s)	285, 477, 1053
HincII	GTYRAC	1 cut(s)	484
HindII	GTYRAC	1 cut(s)	484
HinfI	GANTC	3 cut(s)	110, 329, 437
HpaI	GTTAAC	1 cut(s)	484
HpaII	CCGG	3 cut(s)	285, 477, 1053
HphI	GGTGA	1 cut(s)	181
Hpy166II	GTNNAC	3 cut(s)	436, 484, 655
Hpy188I	TCNGA	2 cut(s)	94, 115
Hpy188III	TCNNGA	7 cut(s)	248, 254, 471, 524, 578, 796, 1018
Hpy8I	GTNNAC	3 cut(s)	436, 484, 655
HpyAV	CCTTC	2 cut(s)	743, 796
HpyCH4III	ACNGT	3 cut(s)	461, 890, 910
HpyCH4IV	ACGT	1 cut(s)	318
HpyCH4V	TGCA	7 cut(s)	244, 316, 702, 771, 851, 899, 1000
HpyF10VI	GCNNNNNNNGC	3 cut(s)	322, 932, 1079
HpyF3I	CTNAG	3 cut(s)	783, 826, 1065
HpySE526I	ACGT	1 cut(s)	318
Ksp22I	TGATCA	1 cut(s)	571
KspAI	GTTAAC	1 cut(s)	484
Kzo9I	GATC	6 cut(s)	250, 467, 520, 571, 964, 1020
LmnI	GCTCC	4 cut(s)	146, 683, 945, 1020
Lsp1109I	GCAGC	3 cut(s)	490, 709, 1017
LweI	GCATC	2 cut(s)	253, 1017
MaeI	CTAG	1 cut(s)	450
MaeII	ACGT	1 cut(s)	318
MaeIII	GTNAC	4 cut(s)	187, 421, 606, 904
MalI	GATC	6 cut(s)	252, 469, 522, 573, 966, 1022
MboI	GATC	6 cut(s)	250, 467, 520, 571, 964, 1020
MboII	GAAGA	7 cut(s)	34, 52, 811, 811, 814, 921, 959
MflI	RGATCY	1 cut(s)	467
MhlI	GDGCHC	1 cut(s)	942
MlsI	TGGCCA	2 cut(s)	5, 863
MluCI	AATT	3 cut(s)	352, 645, 846
MluNI	TGGCCA	2 cut(s)	5, 863
MlyI	GAGTC	3 cut(s)	119, 323, 431
MmeI	TCCRAC	1 cut(s)	615
MnlI	CCTC	8 cut(s)	44, 65, 84, 187, 358, 508, 581, 953
Mox20I	TGGCCA	2 cut(s)	5, 863
MscI	TGGCCA	2 cut(s)	5, 863
MseI	TTAA	3 cut(s)	483, 708, 1084
MslI	CAYNNNNRTG	3 cut(s)	194, 263, 950
Msp20I	TGGCCA	2 cut(s)	5, 863
MspA1I	CMGCKG	2 cut(s)	604, 935
MspI	CCGG	3 cut(s)	285, 477, 1053
MspR9I	CCNGG	2 cut(s)	185, 779
Mva1269I	GAATGC	3 cut(s)	110, 771, 928
MvaI	CCWGG	2 cut(s)	185, 779
MvnI	CGCG	1 cut(s)	618
MwoI	GCNNNNNNNGC	3 cut(s)	322, 932, 1079
NcoI	CCATGG	2 cut(s)	441, 627
NdeII	GATC	6 cut(s)	250, 467, 520, 571, 964, 1020
NlaIV	GGNNCC	3 cut(s)	941, 990, 1051
NmuCI	GTSAC	4 cut(s)	187, 421, 606, 904
NspI	RCATGY	2 cut(s)	343, 1063
PagI	TCATGA	1 cut(s)	795
PciI	ACATGT	1 cut(s)	339
PctI	GAATGC	3 cut(s)	110, 771, 928
PkrI	GCNGC	4 cut(s)	505, 508, 724, 1007
Ple19I	CGATCG	1 cut(s)	253
PleI	GAGTC	3 cut(s)	118, 323, 431
PpsI	GAGTC	3 cut(s)	118, 323, 431
PscI	ACATGT	1 cut(s)	339
Psp6I	CCWGG	2 cut(s)	183, 777
PspEI	GGTNACC	1 cut(s)	187
PspFI	CCCAGC	1 cut(s)	935
PspGI	CCWGG	2 cut(s)	183, 777
PspN4I	GGNNCC	3 cut(s)	941, 990, 1051
PspPI	GGNCC	2 cut(s)	757, 989
PstNI	CAGNNNCTG	1 cut(s)	149
PsuI	RGATCY	1 cut(s)	467
PvuI	CGATCG	1 cut(s)	253
PvuII	CAGCTG	2 cut(s)	604, 935
RsaI	GTAC	2 cut(s)	30, 878
RsaNI	GTAC	2 cut(s)	29, 877
RseI	CAYNNNNRTG	3 cut(s)	194, 263, 950
SaqAI	TTAA	3 cut(s)	483, 708, 1084
SatI	GCNGC	4 cut(s)	504, 507, 723, 1006
Sau3AI	GATC	6 cut(s)	250, 467, 520, 571, 964, 1020
Sau96I	GGNCC	2 cut(s)	757, 989
ScaI	AGTACT	1 cut(s)	30
SchI	GAGTC	3 cut(s)	119, 323, 431
ScrFI	CCNGG	2 cut(s)	185, 779
SduI	GDGCHC	1 cut(s)	942
SfaNI	GCATC	2 cut(s)	253, 1017
SinI	GGWCC	1 cut(s)	989
SmiMI	CAYNNNNRTG	3 cut(s)	194, 263, 950
SmlI	CTYRAG	1 cut(s)	75
SmoI	CTYRAG	1 cut(s)	75
Sse9I	AATT	3 cut(s)	352, 645, 846
SsiI	CCGC	6 cut(s)	237, 414, 507, 539, 546, 1037
SspMI	CTAG	1 cut(s)	450
StyD4I	CCNGG	2 cut(s)	183, 777
StyI	CCWWGG	3 cut(s)	441, 627, 760
TaaI	ACNGT	3 cut(s)	461, 890, 910
TaiI	ACGT	1 cut(s)	321
TaqI	TCGA	2 cut(s)	253, 350
TasI	AATT	3 cut(s)	352, 645, 846
TatI	WGTACW	2 cut(s)	28, 876
TauI	GCSGC	1 cut(s)	509
Tru1I	TTAA	3 cut(s)	483, 708, 1084
Tru9I	TTAA	3 cut(s)	483, 708, 1084
TscAI	CASTG	2 cut(s)	397, 858
TseFI	GTSAC	4 cut(s)	187, 421, 606, 904
TseI	GCWGC	3 cut(s)	503, 722, 1005
Tsp45I	GTSAC	4 cut(s)	187, 421, 606, 904
TspDTI	ATGAA	5 cut(s)	117, 301, 784, 812, 973
TspRI	CASTG	2 cut(s)	397, 858
VpaK11BI	GGWCC	1 cut(s)	989
XceI	RCATGY	2 cut(s)	343, 1063
XspI	CTAG	1 cut(s)	450
ZrmI	AGTACT	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.