Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0007669

Physical Location & Seq

Genomic Coordinates Forward (+)

80252909 .. 80254222

Gene Structure 1314 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00058400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGATTGGCGTGTCCTTGCCACTCGTCACTCGCAGCATACCCGCCTTGCACCCCGATCGAGACATATTCGTGGTTGTCAAGTGCTTTGCCGGTGGCATTATTCTTGCCACGGGGTTCATGCACGTTTTGCCAGACTCTTTTGACATGTTGTCCTCGAATTGTTTGGATGAGAAGCCGTGGCACAAGTTCCCTTTCACTGGGTTTGTTGCGATGTTGTCTGCTATTGTGACTATGATGGTGGACTCCATGGCTACTAGCATATACAGCAGGAGATCAAAAGCCGGAGTTAACCCCGATACTGATGGTGTTGCTGCAGCCTTTGAGGGAGATCAAGAGATGGCTGTGGCGGGTGGCGGCCATGGACATTTTCATTCACACAACCATCAAGTCAAAGGAGGAAGCGAGTCACAGTTGTCACGCTATCGCGTTGTTGCCATGGTATTGGAACTGGGAATTATTGTTCACTCAATTGTTATAGGGCTTTCTCTTGGAGCTTCAAACAACACTTGCACCATTAAAGGTCTTGTAGCTGCCCTATGCTTCCATCAAATGTTTGAAGGCATGGGCCTTGGTGGTTGCATTCTCCAGGCTGAGTTCAAGTTCATGAAGAAGGTAGTACTGGTGTTCTTCTTCTCAGCAACAACCCCATCTGGAATTGCACTGGGAATGGCCCTGTCAAAAATGTACAAAGAAAACAGTCCAAGTGCATTAGTGACAGTAGGACTGCTGAATGCTTCTTCAGCTGGGCTCCTCATCTACATGGCTTTGGTTGATCTTCTCTCTGCTGACTTCATGGGTCCAAAGTTGCAACGCAGCATCAAGCTCCAGATCAAGTCTTACATGGCGGTTCTTTTGGGTGCTGGTGGCATGTCTCTGTTGGCAAAGTGGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000302 GO:0003674 GO:0005215 GO:0005381 GO:0005385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006829 GO:0006950 GO:0006979 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0012505 GO:0015075 GO:0015318 GO:0015675 GO:0015691 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0031410 GO:0031982 GO:0031984 GO:0032870 GO:0033554 GO:0034220 GO:0034599 GO:0034614 GO:0034755 GO:0035690 GO:0042221 GO:0042493 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0055085 GO:0070838 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0071577 GO:0071731 GO:0071732 GO:0071944 GO:0072509 GO:0072511 GO:0097366 GO:0097708 GO:0098655 GO:0098660 GO:0098662 GO:0098791 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

297

Amino Acids

31.61

Weight (kDa)

8.56

Isoelectric Point (pI)

37.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zip	PF02535	2 - 294	2.1e-79	ZIP Zinc transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007669)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31260 AT4G19690 AT4G19690
fragaria_vesca	FvH4_3g12020
malus_domestica	MD05G1255500.v1.1
prunus_persica	Prupe.4G108400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0019701 RchiOBHm_Chr5g0019711
rosa_laevigata	RLG00000032462 RLG00000032463
rosa_multiflora	Rmu_sc0003325.1_g000008 Rmu_ssc0000062.1_g000007 Rmu_ssc0000062.1_g000017
rosa_roxburghii	Rroxscaffold_1G00058400
rosa_rugosa	Rorug05G0052700 Rorug05G0053300
rosa_samantha	Rh5AG143700 Rh5BG142200 Rh5BG142600 Rh5CG153900 Rh5CG154000 Rh5DG142600 Rh5DG142700
rosa_wichuraiana	Rw5G012720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	426
AciI	CCGC	4 cut(s)	42, 347, 354, 845
AcoI	YGGCCR	1 cut(s)	355
AcuI	CTGAAG	1 cut(s)	723
AfaI	GTAC	2 cut(s)	618, 686
AfiI	CCNNNNNNNGG	1 cut(s)	197
AflIII	ACRYGT	1 cut(s)	144
AgsI	TTSAA	3 cut(s)	498, 557, 598
AhdI	GACNNNNNGTC	1 cut(s)	148
AjnI	CCWGG	1 cut(s)	585
AloI	GAACNNNNNNTCC	2 cut(s)	444, 476
AluBI	AGCT	4 cut(s)	494, 530, 743, 823
AluI	AGCT	4 cut(s)	494, 530, 743, 823
Alw26I	GTCTC	2 cut(s)	54, 876
AoxI	GGCC	3 cut(s)	355, 565, 669
ApeKI	GCWGC	5 cut(s)	33, 311, 314, 530, 813
AspS9I	GGNCC	3 cut(s)	565, 670, 797
AvaII	GGWCC	1 cut(s)	797
BanII	GRGCYC	1 cut(s)	750
BbvI	GCAGC	5 cut(s)	45, 298, 326, 517, 825
BccI	CCATC	6 cut(s)	229, 296, 331, 390, 552, 655
BceAI	ACGGC	1 cut(s)	160
BcgI	CGANNNNNNTGC	2 cut(s)	38, 72
BciT130I	CCWGG	1 cut(s)	587
BcoDI	GTCTC	2 cut(s)	54, 876
BfaI	CTAG	1 cut(s)	255
BfmI	CTRYAG	1 cut(s)	312
BisI	GCNGC	6 cut(s)	34, 312, 315, 355, 531, 814
BlsI	GCNGC	6 cut(s)	35, 313, 316, 356, 532, 815
BmcAI	AGTACT	1 cut(s)	618
Bme1390I	CCNGG	1 cut(s)	587
Bme18I	GGWCC	1 cut(s)	797
BmeRI	GACNNNNNGTC	1 cut(s)	148
BmgT120I	GGNCC	3 cut(s)	565, 670, 797
BmiI	GGNNCC	2 cut(s)	749, 798
BmrFI	CCNGG	1 cut(s)	587
BmrI	ACTGGG	3 cut(s)	207, 458, 671
BmsI	GCATC	1 cut(s)	825
BmuI	ACTGGG	3 cut(s)	207, 458, 671
BpmI	CTGGAG	2 cut(s)	569, 809
BsaJI	CCNNGG	6 cut(s)	108, 176, 246, 358, 435, 568
Bsc4I	CCNNNNNNNGG	1 cut(s)	197
Bse118I	RCCGGY	1 cut(s)	89
Bse1I	ACTGG	4 cut(s)	202, 453, 624, 666
BseBI	CCWGG	1 cut(s)	587
BseDI	CCNNGG	6 cut(s)	108, 176, 246, 358, 435, 568
BseGI	GGATG	1 cut(s)	172
BseLI	CCNNNNNNNGG	1 cut(s)	197
BseMII	CTCAG	2 cut(s)	582, 648
BseNI	ACTGG	4 cut(s)	202, 453, 624, 666
BseRI	GAGGAG	1 cut(s)	740
BseXI	GCAGC	5 cut(s)	45, 298, 326, 517, 825
BseYI	CCCAGC	1 cut(s)	743
Bsh1236I	CGCG	1 cut(s)	426
Bsh1285I	CGRYCG	1 cut(s)	58
BshFI	GGCC	3 cut(s)	357, 567, 671
BsiEI	CGRYCG	1 cut(s)	58
BsiSI	CCGG	2 cut(s)	90, 282
BslI	CCNNNNNNNGG	1 cut(s)	197
BsmAI	GTCTC	2 cut(s)	54, 876
BsmI	GAATGC	2 cut(s)	579, 736
BsnI	GGCC	3 cut(s)	357, 567, 671
Bsp1286I	GDGCHC	1 cut(s)	750
Bsp1407I	TGTACA	1 cut(s)	684
Bsp143I	GATC	5 cut(s)	55, 272, 328, 772, 828
Bsp19I	CCATGG	3 cut(s)	246, 358, 435
BspACI	CCGC	4 cut(s)	42, 347, 354, 845
BspANI	GGCC	3 cut(s)	357, 567, 671
BspCNI	CTCAG	2 cut(s)	583, 647
BspFNI	CGCG	1 cut(s)	426
BspHI	TCATGA	1 cut(s)	603
BspLI	GGNNCC	2 cut(s)	749, 798
BspMAI	CTGCAG	1 cut(s)	316
BsrFI	RCCGGY	1 cut(s)	89
BsrGI	TGTACA	1 cut(s)	684
BsrI	ACTGG	4 cut(s)	202, 453, 624, 666
BssAI	RCCGGY	1 cut(s)	89
BssECI	CCNNGG	6 cut(s)	108, 176, 246, 358, 435, 568
BssMI	GATC	5 cut(s)	55, 272, 328, 772, 828
BssT1I	CCWWGG	4 cut(s)	246, 358, 435, 568
Bst2UI	CCWGG	1 cut(s)	587
Bst4CI	ACNGT	3 cut(s)	411, 698, 718
BstAPI	GCANNNNNTGC	1 cut(s)	127
BstAUI	TGTACA	1 cut(s)	684
BstDEI	CTNAG	2 cut(s)	591, 634
BstDSI	CCRYGG	5 cut(s)	108, 176, 246, 358, 435
BstF5I	GGATG	1 cut(s)	172
BstFNI	CGCG	1 cut(s)	426
BstKTI	GATC	5 cut(s)	58, 275, 331, 775, 831
BstMAI	GTCTC	2 cut(s)	54, 876
BstMBI	GATC	5 cut(s)	55, 272, 328, 772, 828
BstMCI	CGRYCG	1 cut(s)	58
BstMWI	GCNNNNNNNGC	4 cut(s)	127, 264, 740, 887
BstNI	CCWGG	1 cut(s)	587
BstNSI	RCATGY	2 cut(s)	148, 871
BstSCI	CCNGG	1 cut(s)	585
BstSFI	CTRYAG	1 cut(s)	312
BstUI	CGCG	1 cut(s)	426
BstV1I	GCAGC	5 cut(s)	45, 298, 326, 517, 825
BstXI	CCANNNNNNTGG	1 cut(s)	442
BsuRI	GGCC	3 cut(s)	357, 567, 671
BtgI	CCRYGG	5 cut(s)	108, 176, 246, 358, 435
BtgZI	GCGATG	1 cut(s)	224
BtsCI	GGATG	1 cut(s)	172
BtsIMutI	CAGTG	2 cut(s)	195, 659
CciI	TCATGA	1 cut(s)	603
Cfr10I	RCCGGY	1 cut(s)	89
Cfr13I	GGNCC	3 cut(s)	565, 670, 797
Csp6I	GTAC	2 cut(s)	617, 685
CviQI	GTAC	2 cut(s)	617, 685
DdeI	CTNAG	2 cut(s)	591, 634
DpnI	GATC	5 cut(s)	57, 274, 330, 774, 830
DpnII	GATC	5 cut(s)	55, 272, 328, 772, 828
DriI	GACNNNNNGTC	1 cut(s)	148
EaeI	YGGCCR	1 cut(s)	355
Eam1105I	GACNNNNNGTC	1 cut(s)	148
Eco130I	CCWWGG	4 cut(s)	246, 358, 435, 568
Eco24I	GRGCYC	1 cut(s)	750
Eco47I	GGWCC	1 cut(s)	797
Eco57I	CTGAAG	1 cut(s)	723
EcoRII	CCWGG	1 cut(s)	585
EcoT14I	CCWWGG	4 cut(s)	246, 358, 435, 568
EcoT38I	GRGCYC	1 cut(s)	750
ErhI	CCWWGG	4 cut(s)	246, 358, 435, 568
FauI	CCCGC	2 cut(s)	49, 340
Fnu4HI	GCNGC	6 cut(s)	34, 312, 315, 355, 531, 814
FokI	GGATG	1 cut(s)	179
FriOI	GRGCYC	1 cut(s)	750
Fsp4HI	GCNGC	6 cut(s)	34, 312, 315, 355, 531, 814
FspBI	CTAG	1 cut(s)	255
GluI	GCNGC	6 cut(s)	34, 312, 315, 355, 531, 814
GsaI	CCCAGC	1 cut(s)	747
GsuI	CTGGAG	2 cut(s)	569, 809
HaeIII	GGCC	3 cut(s)	357, 567, 671
HapII	CCGG	2 cut(s)	90, 282
HincII	GTYRAC	1 cut(s)	289
HindII	GTYRAC	1 cut(s)	289
HinfI	GANTC	3 cut(s)	134, 242, 404
HpaI	GTTAAC	1 cut(s)	289
HpaII	CCGG	2 cut(s)	90, 282
Hpy166II	GTNNAC	3 cut(s)	241, 289, 463
Hpy188III	TCNNGA	5 cut(s)	59, 332, 604, 651, 826
Hpy8I	GTNNAC	3 cut(s)	241, 289, 463
HpyAV	CCTTC	2 cut(s)	551, 604
HpyCH4III	ACNGT	3 cut(s)	411, 698, 718
HpyCH4IV	ACGT	1 cut(s)	123
HpyCH4V	TGCA	8 cut(s)	49, 121, 314, 510, 579, 659, 707, 808
HpyF10VI	GCNNNNNNNGC	4 cut(s)	127, 264, 740, 887
HpyF3I	CTNAG	2 cut(s)	591, 634
HpySE526I	ACGT	1 cut(s)	123
KspAI	GTTAAC	1 cut(s)	289
Kzo9I	GATC	5 cut(s)	55, 272, 328, 772, 828
LmnI	GCTCC	3 cut(s)	491, 753, 828
Lsp1109I	GCAGC	5 cut(s)	45, 298, 326, 517, 825
LweI	GCATC	1 cut(s)	825
MaeI	CTAG	1 cut(s)	255
MaeII	ACGT	1 cut(s)	123
MaeIII	GTNAC	5 cut(s)	25, 226, 405, 414, 712
MalI	GATC	5 cut(s)	57, 274, 330, 774, 830
MboI	GATC	5 cut(s)	55, 272, 328, 772, 828
MboII	GAAGA	5 cut(s)	619, 619, 622, 729, 767
MfeI	CAATTG	1 cut(s)	468
MhlI	GDGCHC	1 cut(s)	750
MluCI	AATT	4 cut(s)	157, 453, 468, 654
MlyI	GAGTC	3 cut(s)	128, 236, 413
MnlI	CCTC	4 cut(s)	163, 316, 389, 761
MseI	TTAA	3 cut(s)	288, 516, 892
MslI	CAYNNNNRTG	2 cut(s)	68, 758
MspA1I	CMGCKG	1 cut(s)	743
MspI	CCGG	2 cut(s)	90, 282
MspR9I	CCNGG	1 cut(s)	587
MunI	CAATTG	1 cut(s)	468
Mva1269I	GAATGC	2 cut(s)	579, 736
MvaI	CCWGG	1 cut(s)	587
MvnI	CGCG	1 cut(s)	426
MwoI	GCNNNNNNNGC	4 cut(s)	127, 264, 740, 887
NcoI	CCATGG	3 cut(s)	246, 358, 435
NdeII	GATC	5 cut(s)	55, 272, 328, 772, 828
NlaIV	GGNNCC	2 cut(s)	749, 798
NmuCI	GTSAC	5 cut(s)	25, 226, 405, 414, 712
NspI	RCATGY	2 cut(s)	148, 871
PagI	TCATGA	1 cut(s)	603
PciI	ACATGT	1 cut(s)	144
PctI	GAATGC	2 cut(s)	579, 736
PkrI	GCNGC	6 cut(s)	35, 313, 316, 356, 532, 815
Ple19I	CGATCG	1 cut(s)	58
PleI	GAGTC	3 cut(s)	128, 236, 412
PpsI	GAGTC	3 cut(s)	128, 236, 412
PscI	ACATGT	1 cut(s)	144
Psp6I	CCWGG	1 cut(s)	585
PspFI	CCCAGC	1 cut(s)	743
PspGI	CCWGG	1 cut(s)	585
PspN4I	GGNNCC	2 cut(s)	749, 798
PspPI	GGNCC	3 cut(s)	565, 670, 797
PstI	CTGCAG	1 cut(s)	316
PvuI	CGATCG	1 cut(s)	58
PvuII	CAGCTG	1 cut(s)	743
RsaI	GTAC	2 cut(s)	618, 686
RsaNI	GTAC	2 cut(s)	617, 685
RseI	CAYNNNNRTG	2 cut(s)	68, 758
SaqAI	TTAA	3 cut(s)	288, 516, 892
SatI	GCNGC	6 cut(s)	34, 312, 315, 355, 531, 814
Sau3AI	GATC	5 cut(s)	55, 272, 328, 772, 828
Sau96I	GGNCC	3 cut(s)	565, 670, 797
ScaI	AGTACT	1 cut(s)	618
SchI	GAGTC	3 cut(s)	128, 236, 413
ScrFI	CCNGG	1 cut(s)	587
SduI	GDGCHC	1 cut(s)	750
SetI	ASST	7 cut(s)	126, 496, 523, 532, 615, 745, 825
SfaNI	GCATC	1 cut(s)	825
SfcI	CTRYAG	1 cut(s)	312
SinI	GGWCC	1 cut(s)	797
SmiMI	CAYNNNNRTG	2 cut(s)	68, 758
Sse9I	AATT	4 cut(s)	157, 453, 468, 654
SsiI	CCGC	4 cut(s)	42, 347, 354, 845
SspMI	CTAG	1 cut(s)	255
StyD4I	CCNGG	1 cut(s)	585
StyI	CCWWGG	4 cut(s)	246, 358, 435, 568
TaaI	ACNGT	3 cut(s)	411, 698, 718
TaiI	ACGT	1 cut(s)	126
TaqI	TCGA	2 cut(s)	58, 155
TasI	AATT	4 cut(s)	157, 453, 468, 654
TatI	WGTACW	2 cut(s)	616, 684
TauI	GCSGC	1 cut(s)	357
Tru1I	TTAA	3 cut(s)	288, 516, 892
Tru9I	TTAA	3 cut(s)	288, 516, 892
TscAI	CASTG	2 cut(s)	202, 666
TseFI	GTSAC	5 cut(s)	25, 226, 405, 414, 712
TseI	GCWGC	5 cut(s)	33, 311, 314, 530, 813
Tsp45I	GTSAC	5 cut(s)	25, 226, 405, 414, 712
TspDTI	ATGAA	5 cut(s)	106, 359, 592, 620, 781
TspRI	CASTG	2 cut(s)	202, 666
VpaK11BI	GGWCC	1 cut(s)	797
XceI	RCATGY	2 cut(s)	148, 871
XspI	CTAG	1 cut(s)	255
ZrmI	AGTACT	1 cut(s)	618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.