AT1G31460

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012285
Physical Location & Seq
Reverse (-)
11261443 .. 11263364
1922 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G31460.1

Sequence Viewer

Length: 906 bp
ATGGCGGATTTTGGGTATTTTTCAGATACAGACGATTCAGCAGTGGAAGAGCTAATTTCGCAAGCGAAGGAGCTTTCTGATTTGGAGCAAGTAGCTGCTATCAATTGTTCTGGATTCACCGATTCTACTCTTCCAGATGATCTCGAATCTCGCTTCCGTCGCCTCAAATCTCTTCCAGCTGCTCCACGACACGAACCGGTATCTTCATCTTCTTCGATGAATAGGCAGAAGCCTCTCTCACATTCCAAAAGCGTGAATGTGAATTTCTCAGGAAATCGAAGAAATCCAGGTAAAAAAACTGGCTCTGTGAGTTTATCTGATGAAGATTCGAGTAATCTCTCGAGAAAAAAACGTGATCTGGATTTGAAATCGAGTTCTCAAGCTGAGCTTGTCTCTAATGGAAGTGGAGATTTCTCAGATTCTGGAAACATCAGTGAGAGTAAAATTCTCTCGCCAGTGAAACAACAAACGAAGAAGAAGCTTCCTAAAGAGAAACGAAGAATCGTATCACCATCTTCATCATCGTCAATCGATTTAGCTACACCACCATCAACAGATTCAGAACCAGAAAAGAAATCGAAACCGAAATCAAAGTCGTCATGGTTCGATAAGTTATCTCCGTCGAAACTCATCGGATCCATTTGGCGTTCTTCACCGAAAAAATCAACAACCAACAAGAAGAATCTCAAAAACTGTAAATCATTTGGTGCTGCTACTTACTCTTCTGGTCGAGAGAGGAACGTTGATTTCGATGAGTTTTTATCTGATTTGAATGCGTTTCCAGTGGAAGATCAAAGGAAAATGTTGAAGAAAGCGCTTAAGGAACAACAGAAGATGAGGAAAGAAGCAGCTGAGATCATTAAAATGGCGAAACATGCATCAGCTAGATTCGATTTTGATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

301

Amino Acids

33.31

Weight (kDa)

9.5

Isoelectric Point (pI)

58.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012285)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23270 AT1G31460
fragaria_vesca FvH4_5g24380
malus_domestica MD16G1288300.v1.1
prunus_persica Prupe.5G017000_v2.0.a1
pyrus_communis pycom16g25600
rosa_chinensis RchiOBHm_Chr7g0214771
rosa_laevigata RLG00000002723 RLG00000020760
rosa_multiflora Rmu_co8342721.1_g000001 Rmu_sc0002308.1_g000045 Rmu_sc0026107.1_g000001
rosa_roxburghii Rroxscaffold_3G00245100
rosa_rugosa Rorug06G0112700
rosa_samantha Rh7AG283900 Rh7BG274500 Rh7CG303300 Rh7DG287200
rosa_wichuraiana Rw7G024200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 5
AclI AACGTT 1 cut(s) 741
AclWI GGATC 2 cut(s) 630, 643
AcsI RAATTY 2 cut(s) 262, 444
AfeI AGCGCT 1 cut(s) 816
AflII CTTAAG 1 cut(s) 818
AgeI ACCGGT 1 cut(s) 196
AgsI TTSAA 3 cut(s) 367, 772, 808
AjnI CCWGG 1 cut(s) 286
Alw26I GTCTC 1 cut(s) 397
AlwI GGATC 2 cut(s) 630, 643
AlwNI CAGNNNCTG 1 cut(s) 422
Ama87I CYCGRG 1 cut(s) 340
Aor51HI AGCGCT 1 cut(s) 816
ApeKI GCWGC 4 cut(s) 95, 179, 710, 848
ApoI RAATTY 2 cut(s) 262, 444
ArsI GACNNNNNNTTYG 2 cut(s) 578, 610
AsiGI ACCGGT 1 cut(s) 196
AspLEI GCGC 1 cut(s) 817
AsuHPI GGTGA 3 cut(s) 109, 501, 645
AvaI CYCGRG 1 cut(s) 340
BamHI GGATCC 1 cut(s) 635
BbvI GCAGC 4 cut(s) 82, 166, 697, 860
BccI CCATC 2 cut(s) 520, 556
BciT130I CCWGG 1 cut(s) 288
BcoDI GTCTC 1 cut(s) 397
BfaI CTAG 1 cut(s) 885
BfoI RGCGCY 1 cut(s) 818
BfrI CTTAAG 1 cut(s) 818
BisI GCNGC 4 cut(s) 96, 180, 711, 849
BlpI GCTNAGC 1 cut(s) 384
BlsI GCNGC 4 cut(s) 97, 181, 712, 850
Bme1390I CCNGG 1 cut(s) 288
BmeT110I CYCGRG 1 cut(s) 340
BmiI GGNNCC 1 cut(s) 637
BmrFI CCNGG 1 cut(s) 288
BmsI GCATC 1 cut(s) 887
BplI GAGNNNNNCTC 2 cut(s) 377, 409
Bpu1102I GCTNAGC 1 cut(s) 384
BpuEI CTTGAG 1 cut(s) 363
Bsa29I ATCGAT 1 cut(s) 531
BsaWI WCCGGW 1 cut(s) 196
Bse118I RCCGGY 1 cut(s) 196
Bse1I ACTGG 3 cut(s) 304, 455, 782
BseBI CCWGG 1 cut(s) 288
BseCI ATCGAT 1 cut(s) 531
BseMII CTCAG 4 cut(s) 282, 375, 429, 843
BseNI ACTGG 3 cut(s) 304, 455, 782
BseXI GCAGC 4 cut(s) 82, 166, 697, 860
BshTI ACCGGT 1 cut(s) 196
BshVI ATCGAT 1 cut(s) 531
BsiHKCI CYCGRG 1 cut(s) 340
BsiSI CCGG 1 cut(s) 197
BsmAI GTCTC 1 cut(s) 397
BsmI GAATGC 1 cut(s) 778
BsoBI CYCGRG 1 cut(s) 340
Bsp143I GATC 5 cut(s) 139, 355, 635, 790, 855
Bsp1720I GCTNAGC 1 cut(s) 384
BspACI CCGC 1 cut(s) 5
BspCNI CTCAG 4 cut(s) 281, 376, 428, 844
BspDI ATCGAT 1 cut(s) 531
BspLI GGNNCC 1 cut(s) 637
BspPI GGATC 2 cut(s) 630, 643
BspQI GCTCTTC 1 cut(s) 42
BspTI CTTAAG 1 cut(s) 818
BsrFI RCCGGY 1 cut(s) 196
BsrI ACTGG 3 cut(s) 304, 455, 782
BssAI RCCGGY 1 cut(s) 196
BssMI GATC 5 cut(s) 139, 355, 635, 790, 855
Bst2UI CCWGG 1 cut(s) 288
Bst4CI ACNGT 1 cut(s) 695
Bst6I CTCTTC 4 cut(s) 42, 135, 177, 727
BstAFI CTTAAG 1 cut(s) 818
BstC8I GCNNGC 1 cut(s) 63
BstDEI CTNAG 4 cut(s) 268, 384, 415, 852
BstH2I RGCGCY 1 cut(s) 818
BstHHI GCGC 1 cut(s) 817
BstKTI GATC 5 cut(s) 142, 358, 638, 793, 858
BstMAI GTCTC 1 cut(s) 397
BstMBI GATC 5 cut(s) 139, 355, 635, 790, 855
BstMWI GCNNNNNNNGC 3 cut(s) 58, 159, 875
BstNI CCWGG 1 cut(s) 288
BstNSI RCATGY 1 cut(s) 878
BstSCI CCNGG 1 cut(s) 286
BstV1I GCAGC 4 cut(s) 82, 166, 697, 860
BstX2I RGATCY 1 cut(s) 635
BstYI RGATCY 1 cut(s) 635
Bsu15I ATCGAT 1 cut(s) 531
BsuTUI ATCGAT 1 cut(s) 531
BtsI GCAGTG 1 cut(s) 48
BtsIMutI CAGTG 4 cut(s) 48, 439, 462, 789
Cac8I GCNNGC 1 cut(s) 63
CaiI CAGNNNCTG 1 cut(s) 422
CfoI GCGC 1 cut(s) 817
Cfr10I RCCGGY 1 cut(s) 196
ClaI ATCGAT 1 cut(s) 531
CspAI ACCGGT 1 cut(s) 196
CviAII CATG 2 cut(s) 600, 875
DdeI CTNAG 4 cut(s) 268, 384, 415, 852
DpnI GATC 5 cut(s) 141, 357, 637, 792, 857
DpnII GATC 5 cut(s) 139, 355, 635, 790, 855
Eam1104I CTCTTC 4 cut(s) 42, 135, 177, 727
EarI CTCTTC 4 cut(s) 42, 135, 177, 727
EciI GGCGGA 1 cut(s) 20
Eco47III AGCGCT 1 cut(s) 816
Eco88I CYCGRG 1 cut(s) 340
EcoRII CCWGG 1 cut(s) 286
EcoT22I ATGCAT 1 cut(s) 880
FaeI CATG 2 cut(s) 603, 878
FaiI YATR 2 cut(s) 601, 876
FalI AAGNNNNNCTT 2 cut(s) 372, 404
FatI CATG 2 cut(s) 599, 874
Fnu4HI GCNGC 4 cut(s) 96, 180, 711, 849
Fsp4HI GCNGC 4 cut(s) 96, 180, 711, 849
FspBI CTAG 1 cut(s) 885
GlaI GCGC 1 cut(s) 816
GluI GCNGC 4 cut(s) 96, 180, 711, 849
HaeII RGCGCY 1 cut(s) 818
HapII CCGG 1 cut(s) 197
HhaI GCGC 1 cut(s) 817
Hin1II CATG 2 cut(s) 603, 878
Hin6I GCGC 1 cut(s) 815
HinP1I GCGC 1 cut(s) 815
HindIII AAGCTT 1 cut(s) 479
HpaII CCGG 1 cut(s) 197
HphI GGTGA 3 cut(s) 109, 501, 645
Hpy188I TCNGA 7 cut(s) 25, 79, 319, 418, 562, 635, 766
Hpy188III TCNNGA 9 cut(s) 111, 134, 143, 270, 340, 342, 359, 423, 731
Hpy99I CGWCG 2 cut(s) 162, 625
HpyAV CCTTC 1 cut(s) 61
HpyCH4III ACNGT 1 cut(s) 695
HpyCH4IV ACGT 2 cut(s) 352, 741
HpyCH4V TGCA 1 cut(s) 878
HpyF10VI GCNNNNNNNGC 3 cut(s) 58, 159, 875
HpyF3I CTNAG 4 cut(s) 268, 384, 415, 852
HpySE526I ACGT 2 cut(s) 352, 741
Hsp92II CATG 2 cut(s) 603, 878
HspAI GCGC 1 cut(s) 815
Kzo9I GATC 5 cut(s) 139, 355, 635, 790, 855
LguI GCTCTTC 1 cut(s) 42
LmnI GCTCC 3 cut(s) 70, 85, 187
Lsp1109I GCAGC 4 cut(s) 82, 166, 697, 860
LweI GCATC 1 cut(s) 887
MaeI CTAG 1 cut(s) 885
MaeII ACGT 2 cut(s) 352, 741
MalI GATC 5 cut(s) 141, 357, 637, 792, 857
MboI GATC 5 cut(s) 139, 355, 635, 790, 855
MfeI CAATTG 1 cut(s) 103
MflI RGATCY 1 cut(s) 635
MluCI AATT 4 cut(s) 54, 103, 262, 444
MnlI CCTC 4 cut(s) 173, 243, 729, 831
Mph1103I ATGCAT 1 cut(s) 880
MseI TTAA 2 cut(s) 819, 861
MslI CAYNNNNRTG 1 cut(s) 863
MspA1I CMGCKG 2 cut(s) 179, 851
MspCI CTTAAG 1 cut(s) 818
MspI CCGG 1 cut(s) 197
MspR9I CCNGG 1 cut(s) 288
MunI CAATTG 1 cut(s) 103
Mva1269I GAATGC 1 cut(s) 778
MvaI CCWGG 1 cut(s) 288
MwoI GCNNNNNNNGC 3 cut(s) 58, 159, 875
NdeII GATC 5 cut(s) 139, 355, 635, 790, 855
NlaIII CATG 2 cut(s) 603, 878
NlaIV GGNNCC 1 cut(s) 637
NsiI ATGCAT 1 cut(s) 880
NspI RCATGY 1 cut(s) 878
PaeR7I CTCGAG 1 cut(s) 340
PciSI GCTCTTC 1 cut(s) 42
PcsI WCGNNNNNNNCGW 1 cut(s) 747
PctI GAATGC 1 cut(s) 778
PinAI ACCGGT 1 cut(s) 196
PkrI GCNGC 4 cut(s) 97, 181, 712, 850
Psp1406I AACGTT 1 cut(s) 741
Psp6I CCWGG 1 cut(s) 286
PspGI CCWGG 1 cut(s) 286
PspN4I GGNNCC 1 cut(s) 637
PstNI CAGNNNCTG 1 cut(s) 422
PsuI RGATCY 1 cut(s) 635
PvuII CAGCTG 2 cut(s) 179, 851
RseI CAYNNNNRTG 1 cut(s) 863
SapI GCTCTTC 1 cut(s) 42
SaqAI TTAA 2 cut(s) 819, 861
SatI GCNGC 4 cut(s) 96, 180, 711, 849
Sau3AI GATC 5 cut(s) 139, 355, 635, 790, 855
ScrFI CCNGG 1 cut(s) 288
SfaNI GCATC 1 cut(s) 887
Sfr274I CTCGAG 1 cut(s) 340
SlaI CTCGAG 1 cut(s) 340
SmiMI CAYNNNNRTG 1 cut(s) 863
SmlI CTYRAG 3 cut(s) 340, 378, 818
SmoI CTYRAG 3 cut(s) 340, 378, 818
Sse9I AATT 4 cut(s) 54, 103, 262, 444
SsiI CCGC 1 cut(s) 5
SspMI CTAG 1 cut(s) 885
StyD4I CCNGG 1 cut(s) 286
TaaI ACNGT 1 cut(s) 695
TaiI ACGT 2 cut(s) 355, 744
TasI AATT 4 cut(s) 54, 103, 262, 444
Tru1I TTAA 2 cut(s) 819, 861
Tru9I TTAA 2 cut(s) 819, 861
TscAI CASTG 4 cut(s) 48, 439, 462, 789
TseI GCWGC 4 cut(s) 95, 179, 710, 848
TspDTI ATGAA 4 cut(s) 195, 233, 336, 507
TspGWI ACGGA 2 cut(s) 146, 609
TspRI CASTG 4 cut(s) 48, 439, 462, 789
Vha464I CTTAAG 1 cut(s) 818
XapI RAATTY 2 cut(s) 262, 444
XceI RCATGY 1 cut(s) 878
XhoI CTCGAG 1 cut(s) 340
XspI CTAG 1 cut(s) 885
Zsp2I ATGCAT 1 cut(s) 880
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.