Rmu_co8342721.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8342721.1
OG0012285
Physical Location & Seq
Forward (+)
530 .. 1013
484 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8342721.1_g000001.1.cds

Sequence Viewer

Length: 484 bp
atgacaaagccggacccacacgttgaaactttcacccacaaaacgccaaaatcaaagagtgtagccgttactcttctttttccttgtgcggccaaaggcagtaggggcggcttctacactgagctcgctcgctccccaactttgaccgtcatggatttctcccacctctccgactccgacgaagactccgccgtagaagacctcctatcccaagccaaagaccacatcctcctcgagcagctctccgccatcaactgctccggcttcaccgactccgtcctccccaccgacctcgagtcccgcttctgcagactcaagtctttccccgtcaccaagcacaacaccaccaactcgcgcccacctcaaaccaccgcttcgttccgccatgattcggctcaggcggaaaacccagatgagaaaaaggttcctaatccgaaatcacagtctgggtatgagtcaccgcctctggaatcgtcggagtttt
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

161

Amino Acids

17.7

Weight (kDa)

5.64

Isoelectric Point (pI)

55.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012285)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23270 AT1G31460
fragaria_vesca FvH4_5g24380
malus_domestica MD16G1288300.v1.1
prunus_persica Prupe.5G017000_v2.0.a1
pyrus_communis pycom16g25600
rosa_chinensis RchiOBHm_Chr7g0214771
rosa_laevigata RLG00000002723 RLG00000020760
rosa_multiflora Rmu_co8342721.1_g000001 Rmu_sc0002308.1_g000045 Rmu_sc0026107.1_g000001
rosa_roxburghii Rroxscaffold_3G00245100
rosa_rugosa Rorug06G0112700
rosa_samantha Rh7AG283900 Rh7BG274500 Rh7CG303300 Rh7DG287200
rosa_wichuraiana Rw7G024200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 355
AciI CCGC 9 cut(s) 89, 108, 189, 246, 301, 372, 382, 401, 461
AcoI YGGCCR 1 cut(s) 90
AfiI CCNNNNNNNGG 1 cut(s) 391
AflIII ACRYGT 1 cut(s) 19
AgsI TTSAA 1 cut(s) 26
AhdI GACNNNNNGTC 1 cut(s) 295
AluBI AGCT 2 cut(s) 124, 241
AluI AGCT 2 cut(s) 124, 241
Alw21I GWGCWC 1 cut(s) 126
Ama87I CYCGRG 2 cut(s) 233, 293
AoxI GGCC 1 cut(s) 90
ApeKI GCWGC 1 cut(s) 238
ArsI GACNNNNNNTTYG 2 cut(s) 428, 460
AspLEI GCGC 1 cut(s) 357
AspS9I GGNCC 1 cut(s) 13
AsuHPI GGTGA 4 cut(s) 25, 259, 322, 450
AvaI CYCGRG 2 cut(s) 233, 293
AvaII GGWCC 1 cut(s) 13
BanII GRGCYC 1 cut(s) 126
BbsI GAAGAC 2 cut(s) 189, 204
Bbv12I GWGCWC 1 cut(s) 126
BbvI GCAGC 1 cut(s) 250
BccI CCATC 1 cut(s) 257
BceAI ACGGC 2 cut(s) 50, 176
BfmI CTRYAG 1 cut(s) 307
BisI GCNGC 3 cut(s) 90, 109, 239
BlsI GCNGC 3 cut(s) 91, 110, 240
Bme18I GGWCC 1 cut(s) 13
BmeRI GACNNNNNGTC 1 cut(s) 295
BmeT110I CYCGRG 2 cut(s) 233, 293
BmgT120I GGNCC 1 cut(s) 13
BmiI GGNNCC 2 cut(s) 15, 426
BoxI GACNNNNGTC 1 cut(s) 316
BpiI GAAGAC 2 cut(s) 189, 204
BplI GAGNNNNNCTC 2 cut(s) 227, 259
Bpu10I CCTNAGC 1 cut(s) 396
BpuEI CTTGAG 1 cut(s) 299
BsaXI ACNNNNNCTCC 2 cut(s) 170, 200
Bsc4I CCNNNNNNNGG 1 cut(s) 391
BseGI GGATG 1 cut(s) 225
BseLI CCNNNNNNNGG 1 cut(s) 391
BseMII CTCAG 2 cut(s) 111, 410
BseRI GAGGAG 1 cut(s) 221
BseXI GCAGC 1 cut(s) 250
Bsh1236I CGCG 1 cut(s) 355
BshFI GGCC 1 cut(s) 92
BsiHKAI GWGCWC 1 cut(s) 126
BsiHKCI CYCGRG 2 cut(s) 233, 293
BsiSI CCGG 2 cut(s) 11, 261
BslFI GGGAC 1 cut(s) 283
BslI CCNNNNNNNGG 1 cut(s) 391
BsmFI GGGAC 1 cut(s) 283
BsnI GGCC 1 cut(s) 92
BsoBI CYCGRG 2 cut(s) 233, 293
Bsp1286I GDGCHC 1 cut(s) 126
BspACI CCGC 9 cut(s) 89, 108, 189, 246, 301, 372, 382, 401, 461
BspANI GGCC 1 cut(s) 92
BspCNI CTCAG 2 cut(s) 112, 409
BspFNI CGCG 1 cut(s) 355
BspLI GGNNCC 2 cut(s) 15, 426
BspMAI CTGCAG 1 cut(s) 311
Bst4CI ACNGT 2 cut(s) 148, 444
Bst6I CTCTTC 1 cut(s) 78
BstC8I GCNNGC 2 cut(s) 126, 130
BstDEI CTNAG 2 cut(s) 120, 396
BstF5I GGATG 1 cut(s) 225
BstFNI CGCG 1 cut(s) 355
BstHHI GCGC 1 cut(s) 357
BstMWI GCNNNNNNNGC 1 cut(s) 105
BstPAI GACNNNNGTC 1 cut(s) 316
BstSFI CTRYAG 1 cut(s) 307
BstUI CGCG 1 cut(s) 355
BstV1I GCAGC 1 cut(s) 250
BstV2I GAAGAC 2 cut(s) 189, 204
BsuRI GGCC 1 cut(s) 92
BtsCI GGATG 1 cut(s) 225
BtsIMutI CAGTG 1 cut(s) 117
Cac8I GCNNGC 2 cut(s) 126, 130
CfoI GCGC 1 cut(s) 357
Cfr13I GGNCC 1 cut(s) 13
CviAII CATG 2 cut(s) 151, 386
CviJI RGCY 9 cut(s) 10, 65, 92, 111, 124, 215, 241, 264, 395
CviKI_1 RGCY 9 cut(s) 10, 65, 92, 111, 124, 215, 241, 264, 395
DdeI CTNAG 2 cut(s) 120, 396
DriI GACNNNNNGTC 1 cut(s) 295
EaeI YGGCCR 1 cut(s) 90
Eam1104I CTCTTC 1 cut(s) 78
Eam1105I GACNNNNNGTC 1 cut(s) 295
EarI CTCTTC 1 cut(s) 78
EciI GGCGGA 4 cut(s) 178, 235, 371, 416
Ecl136II GAGCTC 1 cut(s) 124
Eco24I GRGCYC 1 cut(s) 126
Eco47I GGWCC 1 cut(s) 13
Eco53kI GAGCTC 1 cut(s) 124
Eco88I CYCGRG 2 cut(s) 233, 293
EcoICRI GAGCTC 1 cut(s) 124
EcoT38I GRGCYC 1 cut(s) 126
FaeI CATG 2 cut(s) 154, 389
FaiI YATR 3 cut(s) 152, 387, 453
FaqI GGGAC 1 cut(s) 283
FatI CATG 2 cut(s) 150, 385
FauI CCCGC 1 cut(s) 308
Fnu4HI GCNGC 3 cut(s) 90, 109, 239
FokI GGATG 1 cut(s) 212
FriOI GRGCYC 1 cut(s) 126
Fsp4HI GCNGC 3 cut(s) 90, 109, 239
GlaI GCGC 1 cut(s) 356
GluI GCNGC 3 cut(s) 90, 109, 239
HaeIII GGCC 1 cut(s) 92
HapII CCGG 2 cut(s) 11, 261
HhaI GCGC 1 cut(s) 357
Hin1II CATG 2 cut(s) 154, 389
Hin6I GCGC 1 cut(s) 355
HinP1I GCGC 1 cut(s) 355
HinfI GANTC 8 cut(s) 173, 185, 272, 296, 312, 389, 455, 470
HpaII CCGG 2 cut(s) 11, 261
HphI GGTGA 4 cut(s) 25, 259, 322, 450
Hpy188I TCNGA 4 cut(s) 172, 178, 435, 478
Hpy188III TCNNGA 1 cut(s) 467
Hpy99I CGWCG 2 cut(s) 182, 478
HpyCH4III ACNGT 2 cut(s) 148, 444
HpyCH4IV ACGT 1 cut(s) 21
HpyCH4V TGCA 1 cut(s) 309
HpyF10VI GCNNNNNNNGC 1 cut(s) 105
HpyF3I CTNAG 2 cut(s) 120, 396
HpySE526I ACGT 1 cut(s) 21
Hsp92II CATG 2 cut(s) 154, 389
HspAI GCGC 1 cut(s) 355
LmnI GCTCC 2 cut(s) 137, 263
LpnPI CCDG 6 cut(s) 24, 274, 383, 423, 432, 452
Lsp1109I GCAGC 1 cut(s) 250
MaeII ACGT 1 cut(s) 21
MaeIII GTNAC 3 cut(s) 67, 328, 456
MboII GAAGA 3 cut(s) 65, 194, 209
MhlI GDGCHC 1 cut(s) 126
MlyI GAGTC 6 cut(s) 167, 179, 266, 305, 306, 464
MmeI TCCRAC 3 cut(s) 195, 201, 456
MnlI CCTC 8 cut(s) 176, 212, 239, 242, 290, 302, 372, 474
MspI CCGG 2 cut(s) 11, 261
MvnI CGCG 1 cut(s) 355
MwoI GCNNNNNNNGC 1 cut(s) 105
NlaIII CATG 2 cut(s) 154, 389
NlaIV GGNNCC 2 cut(s) 15, 426
NmuCI GTSAC 2 cut(s) 328, 456
PaeR7I CTCGAG 2 cut(s) 233, 293
PfeI GAWTC 2 cut(s) 389, 470
PflFI GACNNNGTC 1 cut(s) 275
PkrI GCNGC 3 cut(s) 91, 110, 240
PleI GAGTC 6 cut(s) 167, 179, 266, 304, 306, 463
PpsI GAGTC 6 cut(s) 167, 179, 266, 304, 306, 463
PshAI GACNNNNGTC 1 cut(s) 316
Psp124BI GAGCTC 1 cut(s) 126
PspN4I GGNNCC 2 cut(s) 15, 426
PspPI GGNCC 1 cut(s) 13
PspXI VCTCGAGB 2 cut(s) 233, 293
PstI CTGCAG 1 cut(s) 311
PsyI GACNNNGTC 1 cut(s) 275
SacI GAGCTC 1 cut(s) 126
SatI GCNGC 3 cut(s) 90, 109, 239
Sau96I GGNCC 1 cut(s) 13
SchI GAGTC 6 cut(s) 167, 179, 266, 305, 306, 464
SduI GDGCHC 1 cut(s) 126
SetI ASST 8 cut(s) 24, 126, 168, 204, 243, 294, 364, 426
SfcI CTRYAG 1 cut(s) 307
Sfr274I CTCGAG 2 cut(s) 233, 293
SinI GGWCC 1 cut(s) 13
SlaI CTCGAG 2 cut(s) 233, 293
SmlI CTYRAG 3 cut(s) 233, 293, 314
SmoI CTYRAG 3 cut(s) 233, 293, 314
SsiI CCGC 9 cut(s) 89, 108, 189, 246, 301, 372, 382, 401, 461
SstI GAGCTC 1 cut(s) 126
TaaI ACNGT 2 cut(s) 148, 444
TaiI ACGT 1 cut(s) 24
TaqI TCGA 2 cut(s) 234, 294
TauI GCSGC 2 cut(s) 92, 111
TfiI GAWTC 2 cut(s) 389, 470
TscAI CASTG 1 cut(s) 124
TseFI GTSAC 2 cut(s) 328, 456
TseI GCWGC 1 cut(s) 238
Tsp45I GTSAC 2 cut(s) 328, 456
TspGWI ACGGA 1 cut(s) 265
TspRI CASTG 1 cut(s) 124
Tth111I GACNNNGTC 1 cut(s) 275
VpaK11BI GGWCC 1 cut(s) 13
XhoI CTCGAG 2 cut(s) 233, 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.