Prupe.5G017000_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0012285
Physical Location & Seq
Forward (+)
1828661 .. 1829893
1233 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G017000.1

Sequence Viewer

Length: 882 bp
ATGGCGGATTTCTCCTACCTCTCTGATACCGACGAATCAGCTGTAGAAGAACTTATATCTCAAGCACAAGAGCTCTGTGTTCTTGAGCAAGTTTCTGCCATCAACTGCTCTGGTTTCACCGATTCTGAACTCCCCACAGAGCTCGAATGCCGCTTTCGGAAACTCAAATCGTTCCCAGTCACTAAGCACAAAAGCACAGCTCCAGTAAGTGGTTCAGCTCGCCGCAGCTCGATTGAAGGTAAGGCAGAGCCAGTTTCAGATGAAGACTCTGAGATTTTCTCACCGTCTAAACAGAACCCAGATGAGAAAATGGGTTCCGATCCCAAATCAGTATCTGGGTCTGTCTCATCTCCTTTGAATCCCTCGGAATTTTCAGTAAGAAAGGGGAAAAAAGGTTCAAAGGTGAAACCGAAACATGGGTCAGTTTCATCTCCTTCGAATTCTTCGAACTCCTCTCCGGAAAGCGCAATTTTCTCACCATCCAAACAGAACCCAGATAAGAAGCGCCGTCCGAAACCCAAATCAAAATCTCGATCAATTTCTTCTCCATTTGATTCTTGTAACTCTTTGATGGATTCCCCATCGCCGCCGAGAAAATCGGGTTGCTTCTGGTGTTCCCCAAAGACAAAGAGGCCTTCTCACACAAAGAGTAAAGAAAACGGGGCAAGTGAATTTCGGGTTGGTCTGAATTTCATCGACAATGACGAGCTTTTAACGGATCTGGGAAGTTTTTCAAAGAAGGAGCAAACGAGGAAGCTGAAGAAGGCATTGAAGGAGGAAGAGAAGGTTTGCAAAGAGGCTGAGAAAATTGTGAAGTGGGCTAAGCAGGCGTCTGCTAGGATGACTGTGACTGGCATTGAAGACGAACTTAGTGATGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

294

Amino Acids

32.06

Weight (kDa)

8.81

Isoelectric Point (pI)

63.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012285)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23270 AT1G31460
fragaria_vesca FvH4_5g24380
malus_domestica MD16G1288300.v1.1
prunus_persica Prupe.5G017000_v2.0.a1
pyrus_communis pycom16g25600
rosa_chinensis RchiOBHm_Chr7g0214771
rosa_laevigata RLG00000002723 RLG00000020760
rosa_multiflora Rmu_co8342721.1_g000001 Rmu_sc0002308.1_g000045 Rmu_sc0026107.1_g000001
rosa_roxburghii Rroxscaffold_3G00245100
rosa_rugosa Rorug06G0112700
rosa_samantha Rh7AG283900 Rh7BG274500 Rh7CG303300 Rh7DG287200
rosa_wichuraiana Rw7G024200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 209
AccIII TCCGGA 1 cut(s) 457
AciI CCGC 4 cut(s) 5, 151, 223, 587
AclWI GGATC 2 cut(s) 314, 726
AcsI RAATTY 4 cut(s) 368, 439, 671, 688
AcuI CTGAAG 1 cut(s) 779
AcyI GRCGYC 1 cut(s) 830
AfiI CCNNNNNNNGG 2 cut(s) 209, 416
AgsI TTSAA 6 cut(s) 236, 358, 399, 735, 772, 860
AjuI GAANNNNNNNTTGG 2 cut(s) 663, 695
AloI GAACNNNNNNTCC 2 cut(s) 379, 411
AluBI AGCT 8 cut(s) 41, 73, 142, 200, 218, 228, 709, 757
AluI AGCT 8 cut(s) 41, 73, 142, 200, 218, 228, 709, 757
Alw21I GWGCWC 2 cut(s) 75, 144
Alw26I GTCTC 1 cut(s) 349
AlwI GGATC 2 cut(s) 314, 726
AlwNI CAGNNNCTG 1 cut(s) 335
Aor13HI TCCGGA 1 cut(s) 457
AoxI GGCC 1 cut(s) 632
ApeKI GCWGC 1 cut(s) 225
ApoI RAATTY 4 cut(s) 368, 439, 671, 688
ArsI GACNNNNNNTTYG 2 cut(s) 404, 436
Asp700I GAANNNNTTC 1 cut(s) 730
AspLEI GCGC 2 cut(s) 467, 507
AsuHPI GGTGA 4 cut(s) 109, 273, 415, 468
AsuII TTCGAA 2 cut(s) 437, 446
BanII GRGCYC 2 cut(s) 75, 144
BbsI GAAGAC 2 cut(s) 270, 867
Bbv12I GWGCWC 2 cut(s) 75, 144
BbvI GCAGC 1 cut(s) 237
BccI CCATC 4 cut(s) 107, 487, 565, 589
BceAI ACGGC 1 cut(s) 492
BcoDI GTCTC 1 cut(s) 349
BfaI CTAG 1 cut(s) 837
BfmI CTRYAG 1 cut(s) 42
BfoI RGCGCY 1 cut(s) 508
BisI GCNGC 4 cut(s) 151, 223, 226, 587
BlpI GCTNAGC 1 cut(s) 822
BlsI GCNGC 4 cut(s) 152, 224, 227, 588
BmiI GGNNCC 1 cut(s) 316
BmrI ACTGGG 1 cut(s) 170
BmuI ACTGGG 1 cut(s) 170
BpiI GAAGAC 2 cut(s) 270, 867
BplI GAGNNNNNCTC 4 cut(s) 263, 295, 622, 654
BpmI CTGGAG 1 cut(s) 186
Bpu1102I GCTNAGC 1 cut(s) 822
Bpu14I TTCGAA 2 cut(s) 437, 446
BpuEI CTTGAG 2 cut(s) 45, 104
BsaHI GRCGYC 1 cut(s) 830
BsaJI CCNNGG 1 cut(s) 363
BsaWI WCCGGW 1 cut(s) 457
Bsc4I CCNNNNNNNGG 2 cut(s) 209, 416
Bse1I ACTGG 4 cut(s) 176, 203, 251, 856
BseAI TCCGGA 1 cut(s) 457
BseDI CCNNGG 1 cut(s) 363
BseGI GGATG 2 cut(s) 479, 846
BseLI CCNNNNNNNGG 2 cut(s) 209, 416
BseMII CTCAG 2 cut(s) 261, 792
BseNI ACTGG 4 cut(s) 176, 203, 251, 856
BseRI GAGGAG 1 cut(s) 442
BseXI GCAGC 1 cut(s) 237
BshFI GGCC 1 cut(s) 634
BsiHKAI GWGCWC 2 cut(s) 75, 144
BsiSI CCGG 1 cut(s) 458
BslI CCNNNNNNNGG 2 cut(s) 209, 416
BsmAI GTCTC 1 cut(s) 349
BsmI GAATGC 1 cut(s) 152
BsnI GGCC 1 cut(s) 634
Bsp119I TTCGAA 2 cut(s) 437, 446
Bsp1286I GDGCHC 2 cut(s) 75, 144
Bsp13I TCCGGA 1 cut(s) 457
Bsp143I GATC 3 cut(s) 319, 533, 718
Bsp1720I GCTNAGC 1 cut(s) 822
BspACI CCGC 4 cut(s) 5, 151, 223, 587
BspANI GGCC 1 cut(s) 634
BspCNI CTCAG 2 cut(s) 262, 793
BspEI TCCGGA 1 cut(s) 457
BspLI GGNNCC 1 cut(s) 316
BspPI GGATC 2 cut(s) 314, 726
BspT104I TTCGAA 2 cut(s) 437, 446
BsrI ACTGG 4 cut(s) 176, 203, 251, 856
BssECI CCNNGG 1 cut(s) 363
BssMI GATC 3 cut(s) 319, 533, 718
BssNI GRCGYC 1 cut(s) 830
Bst4CI ACNGT 2 cut(s) 285, 847
Bst6I CTCTTC 1 cut(s) 774
BstACI GRCGYC 1 cut(s) 830
BstBI TTCGAA 2 cut(s) 437, 446
BstC8I GCNNGC 2 cut(s) 220, 828
BstDEI CTNAG 5 cut(s) 183, 270, 801, 822, 869
BstF5I GGATG 2 cut(s) 479, 846
BstH2I RGCGCY 1 cut(s) 508
BstHHI GCGC 2 cut(s) 467, 507
BstKTI GATC 3 cut(s) 322, 536, 721
BstMAI GTCTC 1 cut(s) 349
BstMBI GATC 3 cut(s) 319, 533, 718
BstMWI GCNNNNNNNGC 1 cut(s) 827
BstSFI CTRYAG 1 cut(s) 42
BstV1I GCAGC 1 cut(s) 237
BstV2I GAAGAC 2 cut(s) 270, 867
BstX2I RGATCY 1 cut(s) 718
BstYI RGATCY 1 cut(s) 718
BsuRI GGCC 1 cut(s) 634
BtgZI GCGATG 1 cut(s) 567
BtsCI GGATG 2 cut(s) 479, 846
Cac8I GCNNGC 2 cut(s) 220, 828
CaiI CAGNNNCTG 1 cut(s) 335
CfoI GCGC 2 cut(s) 467, 507
CseI GACGC 1 cut(s) 819
CviAII CATG 1 cut(s) 416
DdeI CTNAG 5 cut(s) 183, 270, 801, 822, 869
DpnI GATC 3 cut(s) 321, 535, 720
DpnII GATC 3 cut(s) 319, 533, 718
Eam1104I CTCTTC 1 cut(s) 774
EarI CTCTTC 1 cut(s) 774
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 2 cut(s) 73, 142
Eco147I AGGCCT 1 cut(s) 634
Eco24I GRGCYC 2 cut(s) 75, 144
Eco53kI GAGCTC 2 cut(s) 73, 142
Eco57I CTGAAG 1 cut(s) 779
EcoICRI GAGCTC 2 cut(s) 73, 142
EcoRI GAATTC 1 cut(s) 439
EcoT38I GRGCYC 2 cut(s) 75, 144
FaeI CATG 1 cut(s) 419
FaiI YATR 2 cut(s) 56, 417
FalI AAGNNNNNCTT 1 cut(s) 852
FatI CATG 1 cut(s) 415
Fnu4HI GCNGC 4 cut(s) 151, 223, 226, 587
FokI GGATG 2 cut(s) 466, 853
FriOI GRGCYC 2 cut(s) 75, 144
Fsp4HI GCNGC 4 cut(s) 151, 223, 226, 587
FspBI CTAG 1 cut(s) 837
GlaI GCGC 2 cut(s) 466, 506
GluI GCNGC 4 cut(s) 151, 223, 226, 587
GsuI CTGGAG 1 cut(s) 186
HaeII RGCGCY 1 cut(s) 508
HaeIII GGCC 1 cut(s) 634
HapII CCGG 1 cut(s) 458
HgaI GACGC 1 cut(s) 819
HhaI GCGC 2 cut(s) 467, 507
Hin1I GRCGYC 1 cut(s) 830
Hin1II CATG 1 cut(s) 419
Hin6I GCGC 2 cut(s) 465, 505
HinP1I GCGC 2 cut(s) 465, 505
HinfI GANTC 6 cut(s) 35, 122, 266, 358, 554, 575
HpaII CCGG 1 cut(s) 458
HphI GGTGA 4 cut(s) 109, 273, 415, 468
Hpy188I TCNGA 9 cut(s) 25, 127, 159, 259, 271, 319, 367, 513, 687
Hpy188III TCNNGA 3 cut(s) 83, 458, 531
Hpy99I CGWCG 1 cut(s) 35
HpyAV CCTTC 7 cut(s) 230, 444, 645, 733, 757, 766, 778
HpyCH4III ACNGT 2 cut(s) 285, 847
HpyCH4V TGCA 1 cut(s) 792
HpyF10VI GCNNNNNNNGC 1 cut(s) 827
HpyF3I CTNAG 5 cut(s) 183, 270, 801, 822, 869
Hsp92I GRCGYC 1 cut(s) 830
Hsp92II CATG 1 cut(s) 419
HspAI GCGC 2 cut(s) 465, 505
Kpn2I TCCGGA 1 cut(s) 457
Kzo9I GATC 3 cut(s) 319, 533, 718
LmnI GCTCC 2 cut(s) 205, 742
Lsp1109I GCAGC 1 cut(s) 237
MaeI CTAG 1 cut(s) 837
MaeIII GTNAC 3 cut(s) 178, 560, 847
MalI GATC 3 cut(s) 321, 535, 720
MboI GATC 3 cut(s) 319, 533, 718
MboII GAAGA 7 cut(s) 59, 275, 435, 534, 772, 791, 872
MflI RGATCY 1 cut(s) 718
MhlI GDGCHC 2 cut(s) 75, 144
MluCI AATT 7 cut(s) 368, 439, 468, 537, 671, 688, 807
MlyI GAGTC 1 cut(s) 260
MnlI CCTC 7 cut(s) 29, 373, 463, 624, 744, 769, 790
MroI TCCGGA 1 cut(s) 457
MroXI GAANNNNTTC 1 cut(s) 730
MseI TTAA 1 cut(s) 713
MspA1I CMGCKG 1 cut(s) 41
MspI CCGG 1 cut(s) 458
Mva1269I GAATGC 1 cut(s) 152
MwoI GCNNNNNNNGC 1 cut(s) 827
NdeII GATC 3 cut(s) 319, 533, 718
NlaIII CATG 1 cut(s) 419
NlaIV GGNNCC 1 cut(s) 316
NmeAIII GCCGAG 1 cut(s) 615
NmuCI GTSAC 2 cut(s) 178, 847
NspV TTCGAA 2 cut(s) 437, 446
PceI AGGCCT 1 cut(s) 634
PcsI WCGNNNNNNNCGW 2 cut(s) 443, 702
PctI GAATGC 1 cut(s) 152
PdmI GAANNNNTTC 1 cut(s) 730
PfeI GAWTC 5 cut(s) 35, 122, 358, 554, 575
PflMI CCANNNNNTGG 1 cut(s) 209
PkrI GCNGC 4 cut(s) 152, 224, 227, 588
PleI GAGTC 1 cut(s) 260
PpsI GAGTC 1 cut(s) 260
Psp124BI GAGCTC 2 cut(s) 75, 144
PspN4I GGNNCC 1 cut(s) 316
PstNI CAGNNNCTG 1 cut(s) 335
PsuI RGATCY 1 cut(s) 718
PvuII CAGCTG 1 cut(s) 41
SacI GAGCTC 2 cut(s) 75, 144
SaqAI TTAA 1 cut(s) 713
SatI GCNGC 4 cut(s) 151, 223, 226, 587
Sau3AI GATC 3 cut(s) 319, 533, 718
SchI GAGTC 1 cut(s) 260
SduI GDGCHC 2 cut(s) 75, 144
SfcI CTRYAG 1 cut(s) 42
SfuI TTCGAA 2 cut(s) 437, 446
SmlI CTYRAG 2 cut(s) 60, 83
SmoI CTYRAG 2 cut(s) 60, 83
Sse9I AATT 7 cut(s) 368, 439, 468, 537, 671, 688, 807
SseBI AGGCCT 1 cut(s) 634
SsiI CCGC 4 cut(s) 5, 151, 223, 587
SspMI CTAG 1 cut(s) 837
SstI GAGCTC 2 cut(s) 75, 144
StuI AGGCCT 1 cut(s) 634
TaaI ACNGT 2 cut(s) 285, 847
TaqI TCGA 6 cut(s) 144, 230, 437, 446, 532, 696
TasI AATT 7 cut(s) 368, 439, 468, 537, 671, 688, 807
TauI GCSGC 3 cut(s) 153, 225, 589
TfiI GAWTC 5 cut(s) 35, 122, 358, 554, 575
Tru1I TTAA 1 cut(s) 713
Tru9I TTAA 1 cut(s) 713
TseFI GTSAC 2 cut(s) 178, 847
TseI GCWGC 1 cut(s) 225
Tsp45I GTSAC 2 cut(s) 178, 847
TspDTI ATGAA 3 cut(s) 276, 417, 682
TspGWI ACGGA 1 cut(s) 731
Van91I CCANNNNNTGG 1 cut(s) 209
XapI RAATTY 4 cut(s) 368, 439, 671, 688
XmnI GAANNNNTTC 1 cut(s) 730
XspI CTAG 1 cut(s) 837
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.