Rh7DG287200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0012285
Physical Location & Seq
Reverse (-)
32081422 .. 32082300
879 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG287200.1

Sequence Viewer

Length: 855 bp
ATGGATTTCTCCCACCTCTCCGACTCCGACGAAGACTCCGCCGTAGAAGACCTCCTATCCCAAGCCAAAGACCACATCCTCCTCGAGCAGCTCTCCGCCATCAACTGCTCCGGCTTCACCGACTCCGTCCTCCCCACCGACCTCGAGTCCCGCTTCTGCAGACTCAAGTCTTTCCCCGTCACCAAGCACAACACCACCGCCTCGGGCCCGCCTCAAACCACCGCTTCGTTCCGCCATGATTCGGCTCAGGCGGAAAACCCAGATGAGAAAAAGGTTCCTAATCCGAAATCACAGTCTGGGTATGAGTCACCGCCTCTGGAATCGTCGGAGTTTTCACCGGAAAAGGGAATGACGGCTGCGAAACCGAAGCCAAAACATGGGTCGGTTTCTTCTCGCTCGAATTCTTCGAACTCATCTCCCGATAGTGCAATTTTCTCACCGGCCAAGAGAGTGTCAGGCAAGAAGCAGCGTTCTAAATCGAAATCGAAATCGAAATCTGGGTGGTTGTCTTCTCCGTTGGGTTCTTGCAATTCGCTGAGGGGTGATTCTCCTTCGCCGCCGAGGAAAGCGGGTTGCTTCTGGTGTTCCCCAAAGACAAAGAGTGCTTCTTCTCAGAGAAAGAGCAAGGAAAATGGGGGCATTGGTGGTGGGCTTGGTCTCAATTTCAGCGACGACGATGAGCTCCTGTCTGATTTGGGAAGCTTTTCGAAGAAAGAGCAGAGCAAGATGCTAAAGAAGGCGATGAAGGAGGAAGAGAAGATCAGTAGAGAAGCTGAGAAAATTGTGAAATGGGCTAAGCAAGAGTCGGCTAGAATGAATGTCACTGGTATTGATGATGAACTTAGTGATGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

284

Amino Acids

30.71

Weight (kDa)

8.46

Isoelectric Point (pI)

59.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012285)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23270 AT1G31460
fragaria_vesca FvH4_5g24380
malus_domestica MD16G1288300.v1.1
prunus_persica Prupe.5G017000_v2.0.a1
pyrus_communis pycom16g25600
rosa_chinensis RchiOBHm_Chr7g0214771
rosa_laevigata RLG00000002723 RLG00000020760
rosa_multiflora Rmu_co8342721.1_g000001 Rmu_sc0002308.1_g000045 Rmu_sc0026107.1_g000001
rosa_roxburghii Rroxscaffold_3G00245100
rosa_rugosa Rorug06G0112700
rosa_samantha Rh7AG283900 Rh7BG274500 Rh7CG303300 Rh7DG287200
rosa_wichuraiana Rw7G024200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 377
AcoI YGGCCR 1 cut(s) 441
AcsI RAATTY 1 cut(s) 400
AfiI CCNNNNNNNGG 3 cut(s) 241, 344, 377
AhdI GACNNNNNGTC 1 cut(s) 145
AluBI AGCT 4 cut(s) 91, 682, 702, 773
AluI AGCT 4 cut(s) 91, 682, 702, 773
Alw21I GWGCWC 1 cut(s) 684
Alw26I GTCTC 1 cut(s) 662
Ama87I CYCGRG 3 cut(s) 83, 143, 202
AoxI GGCC 2 cut(s) 205, 441
ApaI GGGCCC 1 cut(s) 209
ApeKI GCWGC 3 cut(s) 88, 356, 466
ApoI RAATTY 1 cut(s) 400
ArsI GACNNNNNNTTYG 4 cut(s) 278, 310, 365, 397
Asp700I GAANNNNTTC 1 cut(s) 703
AspS9I GGNCC 2 cut(s) 205, 206
AsuHPI GGTGA 6 cut(s) 109, 172, 300, 327, 429, 554
AsuII TTCGAA 2 cut(s) 407, 707
AvaI CYCGRG 3 cut(s) 83, 143, 202
BaeGI GKGCMC 1 cut(s) 209
BanII GRGCYC 2 cut(s) 209, 684
BbsI GAAGAC 3 cut(s) 39, 54, 501
Bbv12I GWGCWC 1 cut(s) 684
BbvCI CCTCAGC 1 cut(s) 536
BbvI GCAGC 3 cut(s) 100, 343, 478
BccI CCATC 1 cut(s) 107
BceAI ACGGC 2 cut(s) 26, 369
BcoDI GTCTC 1 cut(s) 662
BfaI CTAG 1 cut(s) 810
BfmI CTRYAG 1 cut(s) 157
BisI GCNGC 4 cut(s) 89, 357, 467, 557
BlpI GCTNAGC 1 cut(s) 795
BlsI GCNGC 4 cut(s) 90, 358, 468, 558
BmeRI GACNNNNNGTC 1 cut(s) 145
BmeT110I CYCGRG 3 cut(s) 83, 143, 202
BmgT120I GGNCC 2 cut(s) 205, 206
BmiI GGNNCC 2 cut(s) 207, 276
BmsI GCATC 1 cut(s) 717
BoxI GACNNNNGTC 1 cut(s) 166
BpiI GAAGAC 3 cut(s) 39, 54, 501
BplI GAGNNNNNCTC 2 cut(s) 77, 109
Bpu10I CCTNAGC 2 cut(s) 246, 536
Bpu1102I GCTNAGC 1 cut(s) 795
Bpu14I TTCGAA 2 cut(s) 407, 707
BpuEI CTTGAG 1 cut(s) 149
BsaI GGTCTC 1 cut(s) 662
BsaJI CCNNGG 2 cut(s) 201, 560
BsaWI WCCGGW 1 cut(s) 337
BsaXI ACNNNNNCTCC 2 cut(s) 20, 50
Bsc4I CCNNNNNNNGG 3 cut(s) 241, 344, 377
Bse118I RCCGGY 1 cut(s) 439
Bse1I ACTGG 1 cut(s) 829
BseDI CCNNGG 2 cut(s) 201, 560
BseGI GGATG 1 cut(s) 75
BseLI CCNNNNNNNGG 3 cut(s) 241, 344, 377
BseMII CTCAG 4 cut(s) 260, 527, 626, 765
BseNI ACTGG 1 cut(s) 829
BseRI GAGGAG 1 cut(s) 71
BseSI GKGCMC 1 cut(s) 209
BseXI GCAGC 3 cut(s) 100, 343, 478
BshFI GGCC 2 cut(s) 207, 443
BsiHKAI GWGCWC 1 cut(s) 684
BsiHKCI CYCGRG 3 cut(s) 83, 143, 202
BsiSI CCGG 3 cut(s) 111, 338, 440
BslFI GGGAC 1 cut(s) 133
BslI CCNNNNNNNGG 3 cut(s) 241, 344, 377
BsmAI GTCTC 1 cut(s) 662
BsmFI GGGAC 1 cut(s) 133
BsnI GGCC 2 cut(s) 207, 443
Bso31I GGTCTC 1 cut(s) 662
BsoBI CYCGRG 3 cut(s) 83, 143, 202
Bsp119I TTCGAA 2 cut(s) 407, 707
Bsp120I GGGCCC 1 cut(s) 205
Bsp1286I GDGCHC 2 cut(s) 209, 684
Bsp143I GATC 1 cut(s) 759
Bsp1720I GCTNAGC 1 cut(s) 795
BspANI GGCC 2 cut(s) 207, 443
BspCNI CTCAG 4 cut(s) 259, 528, 625, 766
BspLI GGNNCC 2 cut(s) 207, 276
BspMAI CTGCAG 1 cut(s) 161
BspT104I TTCGAA 2 cut(s) 407, 707
BspTNI GGTCTC 1 cut(s) 662
BsrFI RCCGGY 1 cut(s) 439
BsrI ACTGG 1 cut(s) 829
BssAI RCCGGY 1 cut(s) 439
BssECI CCNNGG 2 cut(s) 201, 560
BssMI GATC 1 cut(s) 759
Bst4CI ACNGT 1 cut(s) 294
Bst6I CTCTTC 1 cut(s) 747
BstBI TTCGAA 2 cut(s) 407, 707
BstC8I GCNNGC 1 cut(s) 209
BstDEI CTNAG 6 cut(s) 246, 536, 612, 774, 795, 842
BstF5I GGATG 1 cut(s) 75
BstKTI GATC 1 cut(s) 762
BstMAI GTCTC 1 cut(s) 662
BstMBI GATC 1 cut(s) 759
BstPAI GACNNNNGTC 1 cut(s) 166
BstSFI CTRYAG 1 cut(s) 157
BstSLI GKGCMC 1 cut(s) 209
BstV1I GCAGC 3 cut(s) 100, 343, 478
BstV2I GAAGAC 3 cut(s) 39, 54, 501
BsuRI GGCC 2 cut(s) 207, 443
BtgZI GCGATG 1 cut(s) 755
BtsCI GGATG 1 cut(s) 75
BtsIMutI CAGTG 1 cut(s) 822
Cac8I GCNNGC 1 cut(s) 209
Cfr10I RCCGGY 1 cut(s) 439
Cfr13I GGNCC 2 cut(s) 205, 206
CviAII CATG 2 cut(s) 236, 377
DdeI CTNAG 6 cut(s) 246, 536, 612, 774, 795, 842
DpnI GATC 1 cut(s) 761
DpnII GATC 1 cut(s) 759
DriI GACNNNNNGTC 1 cut(s) 145
EaeI YGGCCR 1 cut(s) 441
Eam1104I CTCTTC 1 cut(s) 747
Eam1105I GACNNNNNGTC 1 cut(s) 145
EarI CTCTTC 1 cut(s) 747
EciI GGCGGA 4 cut(s) 28, 85, 221, 266
Ecl136II GAGCTC 1 cut(s) 682
Eco24I GRGCYC 2 cut(s) 209, 684
Eco31I GGTCTC 1 cut(s) 662
Eco53kI GAGCTC 1 cut(s) 682
Eco88I CYCGRG 3 cut(s) 83, 143, 202
EcoICRI GAGCTC 1 cut(s) 682
EcoRI GAATTC 1 cut(s) 400
EcoT38I GRGCYC 2 cut(s) 209, 684
FaeI CATG 2 cut(s) 239, 380
FaiI YATR 3 cut(s) 237, 303, 378
FaqI GGGAC 1 cut(s) 133
FatI CATG 2 cut(s) 235, 376
FauI CCCGC 3 cut(s) 158, 216, 562
Fnu4HI GCNGC 4 cut(s) 89, 357, 467, 557
FokI GGATG 1 cut(s) 62
FriOI GRGCYC 2 cut(s) 209, 684
Fsp4HI GCNGC 4 cut(s) 89, 357, 467, 557
FspBI CTAG 1 cut(s) 810
GluI GCNGC 4 cut(s) 89, 357, 467, 557
HaeIII GGCC 2 cut(s) 207, 443
HapII CCGG 3 cut(s) 111, 338, 440
Hin1II CATG 2 cut(s) 239, 380
HindIII AAGCTT 1 cut(s) 700
HpaII CCGG 3 cut(s) 111, 338, 440
HphI GGTGA 6 cut(s) 109, 172, 300, 327, 429, 554
Hpy188I TCNGA 6 cut(s) 22, 28, 285, 328, 615, 691
Hpy188III TCNNGA 2 cut(s) 317, 419
Hpy99I CGWCG 4 cut(s) 32, 328, 674, 677
HpyAV CCTTC 3 cut(s) 561, 730, 739
HpyCH4III ACNGT 1 cut(s) 294
HpyCH4V TGCA 3 cut(s) 159, 428, 528
HpyF3I CTNAG 6 cut(s) 246, 536, 612, 774, 795, 842
Hsp92II CATG 2 cut(s) 239, 380
Kzo9I GATC 1 cut(s) 759
LmnI GCTCC 2 cut(s) 113, 687
Lsp1109I GCAGC 3 cut(s) 100, 343, 478
LweI GCATC 1 cut(s) 717
MaeI CTAG 1 cut(s) 810
MaeIII GTNAC 3 cut(s) 178, 306, 820
MalI GATC 1 cut(s) 761
MboI GATC 1 cut(s) 759
MboII GAAGA 9 cut(s) 44, 59, 381, 396, 501, 600, 721, 764, 769
MhlI GDGCHC 2 cut(s) 209, 684
MluCI AATT 5 cut(s) 400, 429, 529, 661, 780
MlyI GAGTC 7 cut(s) 17, 29, 116, 155, 156, 314, 812
MmeI TCCRAC 3 cut(s) 45, 51, 306
MroXI GAANNNNTTC 1 cut(s) 703
MspI CCGG 3 cut(s) 111, 338, 440
NdeII GATC 1 cut(s) 759
NlaIII CATG 2 cut(s) 239, 380
NlaIV GGNNCC 2 cut(s) 207, 276
NmeAIII GCCGAG 1 cut(s) 585
NmuCI GTSAC 3 cut(s) 178, 306, 820
NspV TTCGAA 2 cut(s) 407, 707
PaeR7I CTCGAG 2 cut(s) 83, 143
PcsI WCGNNNNNNNCGW 1 cut(s) 404
PdmI GAANNNNTTC 1 cut(s) 703
PfeI GAWTC 3 cut(s) 239, 320, 545
PflFI GACNNNGTC 1 cut(s) 125
PflMI CCANNNNNTGG 1 cut(s) 377
PkrI GCNGC 4 cut(s) 90, 358, 468, 558
PleI GAGTC 7 cut(s) 17, 29, 116, 154, 156, 313, 811
PpsI GAGTC 7 cut(s) 17, 29, 116, 154, 156, 313, 811
PshAI GACNNNNGTC 1 cut(s) 166
Psp124BI GAGCTC 1 cut(s) 684
PspN4I GGNNCC 2 cut(s) 207, 276
PspOMI GGGCCC 1 cut(s) 205
PspPI GGNCC 2 cut(s) 205, 206
PspXI VCTCGAGB 2 cut(s) 83, 143
PstI CTGCAG 1 cut(s) 161
PsyI GACNNNGTC 1 cut(s) 125
SacI GAGCTC 1 cut(s) 684
SatI GCNGC 4 cut(s) 89, 357, 467, 557
Sau3AI GATC 1 cut(s) 759
Sau96I GGNCC 2 cut(s) 205, 206
SchI GAGTC 7 cut(s) 17, 29, 116, 155, 156, 314, 812
SduI GDGCHC 2 cut(s) 209, 684
SetI ASST 8 cut(s) 18, 54, 93, 144, 276, 684, 704, 775
SfaNI GCATC 1 cut(s) 717
SfcI CTRYAG 1 cut(s) 157
Sfr274I CTCGAG 2 cut(s) 83, 143
SfuI TTCGAA 2 cut(s) 407, 707
SlaI CTCGAG 2 cut(s) 83, 143
SmlI CTYRAG 3 cut(s) 83, 143, 164
SmoI CTYRAG 3 cut(s) 83, 143, 164
Sse9I AATT 5 cut(s) 400, 429, 529, 661, 780
SspMI CTAG 1 cut(s) 810
SstI GAGCTC 1 cut(s) 684
TaaI ACNGT 1 cut(s) 294
TaqI TCGA 8 cut(s) 84, 144, 398, 407, 479, 485, 491, 707
TasI AATT 5 cut(s) 400, 429, 529, 661, 780
TauI GCSGC 1 cut(s) 559
TfiI GAWTC 3 cut(s) 239, 320, 545
TscAI CASTG 1 cut(s) 829
TseFI GTSAC 3 cut(s) 178, 306, 820
TseI GCWGC 3 cut(s) 88, 356, 466
Tsp45I GTSAC 3 cut(s) 178, 306, 820
TspDTI ATGAA 3 cut(s) 758, 830, 852
TspGWI ACGGA 2 cut(s) 115, 504
TspRI CASTG 1 cut(s) 829
Tth111I GACNNNGTC 1 cut(s) 125
Van91I CCANNNNNTGG 1 cut(s) 377
XapI RAATTY 1 cut(s) 400
XhoI CTCGAG 2 cut(s) 83, 143
XmnI GAANNNNTTC 1 cut(s) 703
XspI CTAG 1 cut(s) 810
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.