Rmu_sc0026107.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0026107.1
OG0012285
Physical Location & Seq
Reverse (-)
2 .. 429
428 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0026107.1_g000001.1.cds

Sequence Viewer

Length: 428 bp
atgacggctgcgaaaccgaagccaaaacatgggtcggtttcttctcgctcgaattcttcgaattcatctcccgatagtgcaattttctcaccggccaagagagcttcaggcaagaagcagcggtctaaatcgaaattgaaatcgaaatcaaaatctgggtggttgtcttctccgttgggttcttgcaattcgttgaggaatgattctccttcgccgccgaggaaagccggttgcttctggtgttctccaaagacaaagagtgcttcttctcagagaaagagcaaggaaaatgggggtgttggtggtgaccttggtctcaatttcagcgacgacgatgagctcctgtctgatttgggaagcttttcgaagaaagagcagagcaagatgctaaagaaggcgatgaaggaggaagagaagatcagtagaga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

15.21

Weight (kDa)

10.12

Isoelectric Point (pI)

66.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012285)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23270 AT1G31460
fragaria_vesca FvH4_5g24380
malus_domestica MD16G1288300.v1.1
prunus_persica Prupe.5G017000_v2.0.a1
pyrus_communis pycom16g25600
rosa_chinensis RchiOBHm_Chr7g0214771
rosa_laevigata RLG00000002723 RLG00000020760
rosa_multiflora Rmu_co8342721.1_g000001 Rmu_sc0002308.1_g000045 Rmu_sc0026107.1_g000001
rosa_roxburghii Rroxscaffold_3G00245100
rosa_rugosa Rorug06G0112700
rosa_samantha Rh7AG283900 Rh7BG274500 Rh7CG303300 Rh7DG287200
rosa_wichuraiana Rw7G024200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 29
AciI CCGC 2 cut(s) 121, 215
AcoI YGGCCR 1 cut(s) 93
AcsI RAATTY 2 cut(s) 52, 61
AcuI CTGAAG 1 cut(s) 90
AfiI CCNNNNNNNGG 1 cut(s) 29
AgsI TTSAA 1 cut(s) 139
AluBI AGCT 3 cut(s) 104, 340, 360
AluI AGCT 3 cut(s) 104, 340, 360
Alw21I GWGCWC 1 cut(s) 342
Alw26I GTCTC 1 cut(s) 320
AoxI GGCC 1 cut(s) 93
ApeKI GCWGC 2 cut(s) 8, 118
ApoI RAATTY 2 cut(s) 52, 61
ArsI GACNNNNNNTTYG 2 cut(s) 17, 49
Asp700I GAANNNNTTC 1 cut(s) 361
AsuHPI GGTGA 2 cut(s) 81, 317
AsuII TTCGAA 2 cut(s) 59, 365
BanII GRGCYC 1 cut(s) 342
BbsI GAAGAC 1 cut(s) 159
Bbv12I GWGCWC 1 cut(s) 342
BbvI GCAGC 1 cut(s) 130
BceAI ACGGC 1 cut(s) 21
BcoDI GTCTC 1 cut(s) 320
BisI GCNGC 3 cut(s) 9, 119, 215
BlsI GCNGC 3 cut(s) 10, 120, 216
BmsI GCATC 1 cut(s) 375
BoxI GACNNNNGTC 1 cut(s) 312
BpiI GAAGAC 1 cut(s) 159
Bpu14I TTCGAA 2 cut(s) 59, 365
BsaI GGTCTC 1 cut(s) 320
BsaJI CCNNGG 2 cut(s) 218, 310
Bsc4I CCNNNNNNNGG 1 cut(s) 29
Bse118I RCCGGY 2 cut(s) 91, 227
BseDI CCNNGG 2 cut(s) 218, 310
BseLI CCNNNNNNNGG 1 cut(s) 29
BseMII CTCAG 1 cut(s) 284
BseXI GCAGC 1 cut(s) 130
BshFI GGCC 1 cut(s) 95
BsiHKAI GWGCWC 1 cut(s) 342
BsiSI CCGG 2 cut(s) 92, 228
BslI CCNNNNNNNGG 1 cut(s) 29
BsmAI GTCTC 1 cut(s) 320
BsnI GGCC 1 cut(s) 95
Bso31I GGTCTC 1 cut(s) 320
Bsp119I TTCGAA 2 cut(s) 59, 365
Bsp1286I GDGCHC 1 cut(s) 342
Bsp143I GATC 1 cut(s) 417
BspACI CCGC 2 cut(s) 121, 215
BspANI GGCC 1 cut(s) 95
BspCNI CTCAG 1 cut(s) 283
BspT104I TTCGAA 2 cut(s) 59, 365
BspTNI GGTCTC 1 cut(s) 320
BsrFI RCCGGY 2 cut(s) 91, 227
BssAI RCCGGY 2 cut(s) 91, 227
BssECI CCNNGG 2 cut(s) 218, 310
BssMI GATC 1 cut(s) 417
BssT1I CCWWGG 1 cut(s) 310
Bst6I CTCTTC 1 cut(s) 405
BstBI TTCGAA 2 cut(s) 59, 365
BstDEI CTNAG 1 cut(s) 270
BstEII GGTNACC 1 cut(s) 305
BstKTI GATC 1 cut(s) 420
BstMAI GTCTC 1 cut(s) 320
BstMBI GATC 1 cut(s) 417
BstMWI GCNNNNNNNGC 1 cut(s) 101
BstPAI GACNNNNGTC 1 cut(s) 312
BstPI GGTNACC 1 cut(s) 305
BstV1I GCAGC 1 cut(s) 130
BstV2I GAAGAC 1 cut(s) 159
BsuRI GGCC 1 cut(s) 95
BtgZI GCGATG 1 cut(s) 413
Cfr10I RCCGGY 2 cut(s) 91, 227
CviAII CATG 1 cut(s) 29
CviJI RGCY 7 cut(s) 8, 22, 95, 104, 227, 340, 360
CviKI_1 RGCY 7 cut(s) 8, 22, 95, 104, 227, 340, 360
DdeI CTNAG 1 cut(s) 270
DpnI GATC 1 cut(s) 419
DpnII GATC 1 cut(s) 417
EaeI YGGCCR 1 cut(s) 93
Eam1104I CTCTTC 1 cut(s) 405
EarI CTCTTC 1 cut(s) 405
Ecl136II GAGCTC 1 cut(s) 340
Eco130I CCWWGG 1 cut(s) 310
Eco24I GRGCYC 1 cut(s) 342
Eco31I GGTCTC 1 cut(s) 320
Eco53kI GAGCTC 1 cut(s) 340
Eco57I CTGAAG 1 cut(s) 90
Eco91I GGTNACC 1 cut(s) 305
EcoICRI GAGCTC 1 cut(s) 340
EcoO65I GGTNACC 1 cut(s) 305
EcoRI GAATTC 2 cut(s) 52, 61
EcoT14I CCWWGG 1 cut(s) 310
EcoT38I GRGCYC 1 cut(s) 342
ErhI CCWWGG 1 cut(s) 310
FaeI CATG 1 cut(s) 32
FaiI YATR 1 cut(s) 30
FatI CATG 1 cut(s) 28
Fnu4HI GCNGC 3 cut(s) 9, 119, 215
FriOI GRGCYC 1 cut(s) 342
Fsp4HI GCNGC 3 cut(s) 9, 119, 215
GluI GCNGC 3 cut(s) 9, 119, 215
HaeIII GGCC 1 cut(s) 95
HapII CCGG 2 cut(s) 92, 228
Hin1II CATG 1 cut(s) 32
HindIII AAGCTT 1 cut(s) 358
HinfI GANTC 1 cut(s) 203
HpaII CCGG 2 cut(s) 92, 228
HphI GGTGA 2 cut(s) 81, 317
Hpy188I TCNGA 2 cut(s) 273, 349
Hpy188III TCNNGA 1 cut(s) 71
Hpy99I CGWCG 2 cut(s) 332, 335
HpyAV CCTTC 3 cut(s) 219, 388, 397
HpyCH4V TGCA 2 cut(s) 80, 186
HpyF10VI GCNNNNNNNGC 1 cut(s) 101
HpyF3I CTNAG 1 cut(s) 270
Hsp92II CATG 1 cut(s) 32
Kzo9I GATC 1 cut(s) 417
LmnI GCTCC 1 cut(s) 345
LpnPI CCDG 6 cut(s) 93, 105, 141, 223, 241, 356
Lsp1109I GCAGC 1 cut(s) 130
LweI GCATC 1 cut(s) 375
MaeIII GTNAC 1 cut(s) 305
MalI GATC 1 cut(s) 419
MboI GATC 1 cut(s) 417
MboII GAAGA 7 cut(s) 33, 48, 159, 258, 379, 422, 427
MhlI GDGCHC 1 cut(s) 342
MluCI AATT 6 cut(s) 52, 61, 81, 134, 187, 319
MnlI CCTC 3 cut(s) 189, 213, 400
MroXI GAANNNNTTC 1 cut(s) 361
MspA1I CMGCKG 1 cut(s) 121
MspI CCGG 2 cut(s) 92, 228
MwoI GCNNNNNNNGC 1 cut(s) 101
NdeII GATC 1 cut(s) 417
NlaIII CATG 1 cut(s) 32
NmeAIII GCCGAG 1 cut(s) 243
NmuCI GTSAC 1 cut(s) 305
NspV TTCGAA 2 cut(s) 59, 365
PcsI WCGNNNNNNNCGW 1 cut(s) 56
PdmI GAANNNNTTC 1 cut(s) 361
PfeI GAWTC 1 cut(s) 203
PflMI CCANNNNNTGG 1 cut(s) 29
PkrI GCNGC 3 cut(s) 10, 120, 216
PshAI GACNNNNGTC 1 cut(s) 312
Psp124BI GAGCTC 1 cut(s) 342
PspEI GGTNACC 1 cut(s) 305
SacI GAGCTC 1 cut(s) 342
SatI GCNGC 3 cut(s) 9, 119, 215
Sau3AI GATC 1 cut(s) 417
SduI GDGCHC 1 cut(s) 342
SetI ASST 4 cut(s) 106, 312, 342, 362
SfaNI GCATC 1 cut(s) 375
SfuI TTCGAA 2 cut(s) 59, 365
Sse9I AATT 6 cut(s) 52, 61, 81, 134, 187, 319
SsiI CCGC 2 cut(s) 121, 215
SstI GAGCTC 1 cut(s) 342
StyI CCWWGG 1 cut(s) 310
TaqI TCGA 5 cut(s) 50, 59, 131, 143, 365
TasI AATT 6 cut(s) 52, 61, 81, 134, 187, 319
TauI GCSGC 1 cut(s) 217
TfiI GAWTC 1 cut(s) 203
TseFI GTSAC 1 cut(s) 305
TseI GCWGC 2 cut(s) 8, 118
Tsp45I GTSAC 1 cut(s) 305
TspDTI ATGAA 2 cut(s) 54, 416
TspGWI ACGGA 1 cut(s) 162
Van91I CCANNNNNTGG 1 cut(s) 29
XapI RAATTY 2 cut(s) 52, 61
XmnI GAANNNNTTC 1 cut(s) 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.