FvH4_5g24380

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0012285
Physical Location & Seq
Reverse (-)
15748460 .. 15750537
2078 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g24380.t1

Sequence Viewer

Length: 870 bp
ATGGATTTCTCCCACCACCACCTCTCCGACTCCGACGAAGACTCCGCGGTAGACGACCTCCTATCCCAAGCCAAAGACCACATCGTCCTCGAGCAGCTCGCCGCCATCAACTGCTCCTCCCTCACCGACGACTCCGTCCTCCCCACCCACCTCGAGTCCCGCTTCTCCAAACTCAAGTCCTTCCCGGCCTCCAAGCCTAAGTCCTCCGCCACAACCACCGCCTCTTTCCGTCGGAATGAAAACCCAGATGAGAAAAAGGTCCCTACTCCGAAATCACAATCTGGGTATGTCTCGCCGCCTCAGGAATCGCCGGAGTTTTCACCGGAAAAGGGCGTTCAGTCGCCTTTAAAGAGTTCGAAGCCGAAACAGAAACATGGGTCGGGTTCGTCTCGCTCGAATTCGTCGAATTCTTCACCGGAGAGTGCGATTTTCTCACCGGCCAAGAGAGTTTCAGGGAGGAAGCAGCGTTCGAAATCGAAATCCAAAGTGAAATCTGGGTGGCTGTCTTCTCCGTTGGGTTCTTGCAATTCGCTGAGGGAGGACTCTCCTTCGCCGCCGAGGAAAGCCGGGTGCTTCTGGTGTTCCCCGAAGAGCAAGAGTGCTAATTCGTCTCAGAGGAAGAGTAAAGAAAATGGGGGTGTTGGTGGTGGGATTGGTTTGGATTTCAGCGACGACGATGAGGTCTTTTCAGGTTTGGGGAGTTTTTCGAAGAGAGAGCAGAGCAAGATTCTGAAGAAGGCAATGAAGGAGGAAGAGAAGATCAGTAGAGAAGCTGAGAAAATTGTCAAGTGGGCTAAGCAAGAGTCGGCTAGGATGAATGTGACTGGTCAAGGAATTTTCTGCTCGTACTGCTGGTGCGAACGATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

290

Amino Acids

31.5

Weight (kDa)

9.33

Isoelectric Point (pI)

67.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012285)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23270 AT1G31460
fragaria_vesca FvH4_5g24380
malus_domestica MD16G1288300.v1.1
prunus_persica Prupe.5G017000_v2.0.a1
pyrus_communis pycom16g25600
rosa_chinensis RchiOBHm_Chr7g0214771
rosa_laevigata RLG00000002723 RLG00000020760
rosa_multiflora Rmu_co8342721.1_g000001 Rmu_sc0002308.1_g000045 Rmu_sc0026107.1_g000001
rosa_roxburghii Rroxscaffold_3G00245100
rosa_rugosa Rorug06G0112700
rosa_samantha Rh7AG283900 Rh7BG274500 Rh7CG303300 Rh7DG287200
rosa_wichuraiana Rw7G024200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 3 cut(s) 83, 134, 680
AccI GTMKAC 1 cut(s) 51
AccII CGCG 1 cut(s) 47
AciI CCGC 8 cut(s) 45, 47, 102, 160, 207, 219, 296, 554
AcoI YGGCCR 1 cut(s) 438
AcsI RAATTY 3 cut(s) 397, 406, 834
AcuI CTGAAG 1 cut(s) 752
AfaI GTAC 1 cut(s) 848
AfiI CCNNNNNNNGG 1 cut(s) 329
AloI GAACNNNNNNTCC 2 cut(s) 451, 483
AluBI AGCT 2 cut(s) 97, 773
AluI AGCT 2 cut(s) 97, 773
Alw26I GTCTC 3 cut(s) 295, 393, 615
Ama87I CYCGRG 2 cut(s) 89, 152
AoxI GGCC 2 cut(s) 186, 438
ApeKI GCWGC 2 cut(s) 94, 463
ApoI RAATTY 3 cut(s) 397, 406, 834
AspS9I GGNCC 1 cut(s) 259
AsuC2I CCSGG 2 cut(s) 185, 568
AsuHPI GGTGA 4 cut(s) 115, 312, 405, 426
AsuII TTCGAA 3 cut(s) 356, 470, 707
AvaI CYCGRG 2 cut(s) 89, 152
AvaII GGWCC 1 cut(s) 259
AxyI CCTNAGG 1 cut(s) 300
BbsI GAAGAC 2 cut(s) 45, 498
BbvCI CCTCAGC 1 cut(s) 533
BbvI GCAGC 2 cut(s) 106, 475
BccI CCATC 1 cut(s) 113
BcnI CCSGG 2 cut(s) 185, 568
BcoDI GTCTC 3 cut(s) 295, 393, 615
BfaI CTAG 1 cut(s) 810
BisI GCNGC 5 cut(s) 95, 102, 296, 464, 554
BlpI GCTNAGC 1 cut(s) 795
BlsI GCNGC 5 cut(s) 96, 103, 297, 465, 555
Bme1390I CCNGG 2 cut(s) 185, 568
Bme18I GGWCC 1 cut(s) 259
BmeT110I CYCGRG 2 cut(s) 89, 152
BmgT120I GGNCC 1 cut(s) 259
BmiI GGNNCC 1 cut(s) 261
BmrFI CCNGG 2 cut(s) 185, 568
BpiI GAAGAC 2 cut(s) 45, 498
Bpu10I CCTNAGC 1 cut(s) 533
Bpu1102I GCTNAGC 1 cut(s) 795
Bpu14I TTCGAA 3 cut(s) 356, 470, 707
BpuEI CTTGAG 1 cut(s) 158
BpuMI CCSGG 2 cut(s) 185, 568
BsaJI CCNNGG 2 cut(s) 45, 557
BsaWI WCCGGW 2 cut(s) 322, 415
BsaXI ACNNNNNCTCC 6 cut(s) 8, 26, 38, 56, 101, 131
Bsc4I CCNNNNNNNGG 1 cut(s) 329
Bse118I RCCGGY 1 cut(s) 436
Bse1I ACTGG 1 cut(s) 829
Bse21I CCTNAGG 1 cut(s) 300
Bse3DI GCAATG 1 cut(s) 747
BseDI CCNNGG 2 cut(s) 45, 557
BseGI GGATG 1 cut(s) 819
BseLI CCNNNNNNNGG 1 cut(s) 329
BseMI GCAATG 1 cut(s) 747
BseMII CTCAG 4 cut(s) 314, 524, 626, 765
BseNI ACTGG 1 cut(s) 829
BseRI GAGGAG 1 cut(s) 106
BseXI GCAGC 2 cut(s) 106, 475
Bsh1236I CGCG 1 cut(s) 47
BshFI GGCC 2 cut(s) 188, 440
BsiHKCI CYCGRG 2 cut(s) 89, 152
BsiSI CCGG 6 cut(s) 185, 311, 323, 416, 437, 567
BslFI GGGAC 2 cut(s) 142, 245
BslI CCNNNNNNNGG 1 cut(s) 329
BsmAI GTCTC 3 cut(s) 295, 393, 615
BsmBI CGTCTC 2 cut(s) 393, 615
BsmFI GGGAC 2 cut(s) 142, 245
BsnI GGCC 2 cut(s) 188, 440
BsoBI CYCGRG 2 cut(s) 89, 152
Bsp119I TTCGAA 3 cut(s) 356, 470, 707
Bsp143I GATC 2 cut(s) 759, 863
Bsp1720I GCTNAGC 1 cut(s) 795
BspACI CCGC 8 cut(s) 45, 47, 102, 160, 207, 219, 296, 554
BspANI GGCC 2 cut(s) 188, 440
BspCNI CTCAG 4 cut(s) 313, 525, 625, 766
BspFNI CGCG 1 cut(s) 47
BspLI GGNNCC 1 cut(s) 261
BspQI GCTCTTC 1 cut(s) 584
BspT104I TTCGAA 3 cut(s) 356, 470, 707
BsrDI GCAATG 1 cut(s) 747
BsrFI RCCGGY 1 cut(s) 436
BsrI ACTGG 1 cut(s) 829
BssAI RCCGGY 1 cut(s) 436
BssECI CCNNGG 2 cut(s) 45, 557
BssMI GATC 2 cut(s) 759, 863
Bst6I CTCTTC 4 cut(s) 584, 614, 704, 747
BstBI TTCGAA 3 cut(s) 356, 470, 707
BstC8I GCNNGC 1 cut(s) 99
BstDEI CTNAG 7 cut(s) 198, 300, 533, 612, 774, 795, 867
BstDSI CCRYGG 1 cut(s) 45
BstF5I GGATG 1 cut(s) 819
BstFNI CGCG 1 cut(s) 47
BstKTI GATC 2 cut(s) 762, 866
BstMAI GTCTC 3 cut(s) 295, 393, 615
BstMBI GATC 2 cut(s) 759, 863
BstMWI GCNNNNNNNGC 1 cut(s) 849
BstSCI CCNGG 2 cut(s) 183, 566
BstUI CGCG 1 cut(s) 47
BstV1I GCAGC 2 cut(s) 106, 475
BstV2I GAAGAC 2 cut(s) 45, 498
Bsu36I CCTNAGG 1 cut(s) 300
BsuRI GGCC 2 cut(s) 188, 440
BtgI CCRYGG 1 cut(s) 45
BtsCI GGATG 1 cut(s) 819
Cac8I GCNNGC 1 cut(s) 99
Cfr10I RCCGGY 1 cut(s) 436
Cfr13I GGNCC 1 cut(s) 259
Cfr42I CCGCGG 1 cut(s) 48
Csp6I GTAC 1 cut(s) 847
CviAII CATG 1 cut(s) 374
CviQI GTAC 1 cut(s) 847
DdeI CTNAG 7 cut(s) 198, 300, 533, 612, 774, 795, 867
DpnI GATC 2 cut(s) 761, 865
DpnII GATC 2 cut(s) 759, 863
DraI TTTAAA 1 cut(s) 348
DrdI GACNNNNNNGTC 3 cut(s) 83, 134, 680
DseDI GACNNNNNNGTC 3 cut(s) 83, 134, 680
EaeI YGGCCR 1 cut(s) 438
Eam1104I CTCTTC 4 cut(s) 584, 614, 704, 747
EarI CTCTTC 4 cut(s) 584, 614, 704, 747
EciI GGCGGA 1 cut(s) 196
Eco47I GGWCC 1 cut(s) 259
Eco57I CTGAAG 1 cut(s) 752
Eco81I CCTNAGG 1 cut(s) 300
Eco88I CYCGRG 2 cut(s) 89, 152
EcoO109I RGGNCCY 1 cut(s) 259
EcoRI GAATTC 2 cut(s) 397, 406
Esp3I CGTCTC 2 cut(s) 393, 615
FaeI CATG 1 cut(s) 377
FaiI YATR 2 cut(s) 288, 375
FaqI GGGAC 2 cut(s) 142, 245
FatI CATG 1 cut(s) 373
FauI CCCGC 1 cut(s) 167
FblI GTMKAC 1 cut(s) 51
Fnu4HI GCNGC 5 cut(s) 95, 102, 296, 464, 554
FokI GGATG 1 cut(s) 826
Fsp4HI GCNGC 5 cut(s) 95, 102, 296, 464, 554
FspBI CTAG 1 cut(s) 810
GluI GCNGC 5 cut(s) 95, 102, 296, 464, 554
HaeIII GGCC 2 cut(s) 188, 440
HapII CCGG 6 cut(s) 185, 311, 323, 416, 437, 567
Hin1II CATG 1 cut(s) 377
HinfI GANTC 8 cut(s) 29, 41, 131, 155, 305, 542, 727, 803
HpaII CCGG 6 cut(s) 185, 311, 323, 416, 437, 567
HphI GGTGA 4 cut(s) 115, 312, 405, 426
Hpy166II GTNNAC 1 cut(s) 52
Hpy188I TCNGA 6 cut(s) 28, 34, 234, 270, 615, 732
Hpy188III TCNNGA 1 cut(s) 302
Hpy8I GTNNAC 1 cut(s) 52
Hpy99I CGWCG 6 cut(s) 38, 131, 234, 406, 674, 677
HpyAV CCTTC 4 cut(s) 190, 558, 730, 739
HpyCH4V TGCA 1 cut(s) 525
HpyF10VI GCNNNNNNNGC 1 cut(s) 849
HpyF3I CTNAG 7 cut(s) 198, 300, 533, 612, 774, 795, 867
Hsp92II CATG 1 cut(s) 377
KspI CCGCGG 1 cut(s) 48
Kzo9I GATC 2 cut(s) 759, 863
LguI GCTCTTC 1 cut(s) 584
LmnI GCTCC 1 cut(s) 119
Lsp1109I GCAGC 2 cut(s) 106, 475
MaeI CTAG 1 cut(s) 810
MaeIII GTNAC 1 cut(s) 820
MalI GATC 2 cut(s) 761, 865
MboI GATC 2 cut(s) 759, 863
MboII GAAGA 9 cut(s) 50, 402, 498, 601, 631, 721, 745, 764, 769
MluCI AATT 6 cut(s) 397, 406, 526, 604, 780, 834
MlyI GAGTC 6 cut(s) 23, 35, 125, 164, 536, 812
MmeI TCCRAC 3 cut(s) 51, 57, 212
MseI TTAA 1 cut(s) 347
MspA1I CMGCKG 1 cut(s) 47
MspI CCGG 6 cut(s) 185, 311, 323, 416, 437, 567
MspR9I CCNGG 2 cut(s) 185, 568
MvnI CGCG 1 cut(s) 47
MwoI GCNNNNNNNGC 1 cut(s) 849
NciI CCSGG 2 cut(s) 185, 568
NdeII GATC 2 cut(s) 759, 863
NlaIII CATG 1 cut(s) 377
NlaIV GGNNCC 1 cut(s) 261
NmeAIII GCCGAG 1 cut(s) 582
NmuCI GTSAC 1 cut(s) 820
NspV TTCGAA 3 cut(s) 356, 470, 707
PaeR7I CTCGAG 2 cut(s) 89, 152
PciSI GCTCTTC 1 cut(s) 584
PcsI WCGNNNNNNNCGW 2 cut(s) 392, 401
PfeI GAWTC 2 cut(s) 305, 727
PflFI GACNNNGTC 1 cut(s) 134
PkrI GCNGC 5 cut(s) 96, 103, 297, 465, 555
PleI GAGTC 6 cut(s) 23, 35, 125, 163, 536, 811
PpsI GAGTC 6 cut(s) 23, 35, 125, 163, 536, 811
PpuMI RGGWCCY 1 cut(s) 259
Psp5II RGGWCCY 1 cut(s) 259
PspN4I GGNNCC 1 cut(s) 261
PspPI GGNCC 1 cut(s) 259
PspPPI RGGWCCY 1 cut(s) 259
PspXI VCTCGAGB 2 cut(s) 89, 152
PsyI GACNNNGTC 1 cut(s) 134
RsaI GTAC 1 cut(s) 848
RsaNI GTAC 1 cut(s) 847
SacII CCGCGG 1 cut(s) 48
SapI GCTCTTC 1 cut(s) 584
SaqAI TTAA 1 cut(s) 347
SatI GCNGC 5 cut(s) 95, 102, 296, 464, 554
Sau3AI GATC 2 cut(s) 759, 863
Sau96I GGNCC 1 cut(s) 259
SchI GAGTC 6 cut(s) 23, 35, 125, 164, 536, 812
ScrFI CCNGG 2 cut(s) 185, 568
SetI ASST 8 cut(s) 24, 60, 99, 153, 261, 684, 694, 775
Sfr274I CTCGAG 2 cut(s) 89, 152
Sfr303I CCGCGG 1 cut(s) 48
SfuI TTCGAA 3 cut(s) 356, 470, 707
SgrBI CCGCGG 1 cut(s) 48
SinI GGWCC 1 cut(s) 259
SlaI CTCGAG 2 cut(s) 89, 152
SmlI CTYRAG 3 cut(s) 89, 152, 173
SmoI CTYRAG 3 cut(s) 89, 152, 173
Sse9I AATT 6 cut(s) 397, 406, 526, 604, 780, 834
SsiI CCGC 8 cut(s) 45, 47, 102, 160, 207, 219, 296, 554
SspMI CTAG 1 cut(s) 810
StyD4I CCNGG 2 cut(s) 183, 566
TaqI TCGA 8 cut(s) 90, 153, 356, 395, 404, 470, 476, 707
TasI AATT 6 cut(s) 397, 406, 526, 604, 780, 834
TauI GCSGC 3 cut(s) 104, 298, 556
TfiI GAWTC 2 cut(s) 305, 727
Tru1I TTAA 1 cut(s) 347
Tru9I TTAA 1 cut(s) 347
TseFI GTSAC 1 cut(s) 820
TseI GCWGC 2 cut(s) 94, 463
Tsp45I GTSAC 1 cut(s) 820
TspDTI ATGAA 3 cut(s) 252, 758, 830
TspGWI ACGGA 3 cut(s) 124, 218, 501
Tth111I GACNNNGTC 1 cut(s) 134
VpaK11BI GGWCC 1 cut(s) 259
XapI RAATTY 3 cut(s) 397, 406, 834
XhoI CTCGAG 2 cut(s) 89, 152
XmiI GTMKAC 1 cut(s) 51
XspI CTAG 1 cut(s) 810
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.